Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05709 Brassica carinata HOM05D002232 ORTHO05D002323 1.1e-31 139.4 73 100.0
C03p22960 Brassica napus HOM05D002232 ORTHO05D002323 1.4e-31 139.0 72 100.0
BolC3t14697H Brassica oleracea HOM05D002232 ORTHO05D002323 1.4e-31 139.0 72 100.0
A03p19700 Brassica napus HOM05D002232 ORTHO05D002323 6.5e-29 130.2 72 94.4
BraA03t11224Z Brassica rapa HOM05D002232 ORTHO05D002323 6.5e-29 130.2 72 94.4
BcaB01g03884 Brassica carinata HOM05D002232 ORTHO05D002323 6.8e-26 120.2 72 84.7
Thhalv10017259m.g Eutrema salsugineum HOM05D002232 ORTHO05D002323 2.8e-24 114.8 72 81.9
Sp4g18010 Schrenkiella parvula HOM05D002232 ORTHO05D002323 1.1e-23 112.8 74 78.4
AT2G35760 Arabidopsis thaliana HOM05D002232 ORTHO05D002323 5.9e-22 107.1 74 73.0
AL4G31860 Arabidopsis lyrata HOM05D002232 ORTHO05D002323 1.7e-21 105.5 74 74.3
CANSAT56G1351 Cannabis sativa HOM05D002232 ORTHO05D002323 5.5e-20 100.5 75 65.3
Actinidia26841 Actinidia chinensis HOM05D002232 ORTHO05D002323 9.5e-20 99.8 75 65.3
Migut.H01620 Erythranthe guttata HOM05D002232 ORTHO05D002323 9.5e-20 99.8 76 65.8
SalBow8G2952 Salvia bowleyana HOM05D002232 ORTHO05D002323 9.5e-20 99.8 75 66.7
CARHR130000 Cardamine hirsuta HOM05D002232 ORTHO05D002323 2.8e-19 98.2 74 68.9
Dinv04409 Davidia involucrata HOM05D002232 ORTHO05D002323 2.8e-19 98.2 75 65.3
MSTRG.16040 Avicennia marina HOM05D002232 ORTHO05D002323 3.6e-19 97.8 75 64.0
MSTRG.7147 Avicennia marina HOM05D002232 ORTHO05D002323 3.6e-19 97.8 75 64.0
SGA_v2.0_scaffold89G27527 Striga asiatica HOM05D002232 ORTHO05D002323 3.6e-19 97.8 75 64.0
Actinidia02296 Actinidia chinensis HOM05D002232 ORTHO05D002323 4.7e-19 97.4 75 64.0
Manes.08G070700 Manihot esculenta HOM05D002232 ORTHO05D002323 4.7e-19 97.4 75 65.3
Potri.006G016900 Populus trichocarpa HOM05D002232 ORTHO05D002323 4.7e-19 97.4 75 65.3
Gohir.D06G161700 Gossypium hirsutum HOM05D002232 ORTHO05D002323 6.1e-19 97.1 75 62.7
Gorai.010G188700 Gossypium raimondii HOM05D002232 ORTHO05D002323 6.1e-19 97.1 75 62.7
Manes.09G081684 Manihot esculenta HOM05D002232 ORTHO05D002323 6.1e-19 97.1 75 65.3
Potri.016G008800 Populus trichocarpa HOM05D002232 ORTHO05D002323 6.1e-19 97.1 75 64.0
Carub.0004s1749 Capsella rubella HOM05D002232 ORTHO05D002323 1.0e-18 96.3 75 66.7
Gohir.A06G155300 Gossypium hirsutum HOM05D002232 ORTHO05D002323 1.4e-18 95.9 75 61.3
MD00G1058300 Malus domestica HOM05D002232 ORTHO05D002323 1.4e-18 95.9 75 62.7
Manes.09G081900 Manihot esculenta HOM05D002232 ORTHO05D002323 1.4e-18 95.9 75 64.0
Cc09_g00610 Coffea canephora HOM05D002232 ORTHO05D002323 1.8e-18 95.5 75 61.3
PGR004G0703 Punica granatum HOM05D002232 ORTHO05D002323 1.8e-18 95.5 75 64.0
Atru.chr1.2338 Acer truncatum HOM05D002232 ORTHO05D002323 2.3e-18 95.1 75 62.7
Ciclev10016754m.g Citrus clementina HOM05D002232 ORTHO05D002323 2.3e-18 95.1 75 62.7
Sabra06G0012000 Salix brachista HOM05D002232 ORTHO05D002323 2.3e-18 95.1 75 62.7
Dinv19877 Davidia involucrata HOM05D002232 ORTHO05D002323 3.0e-18 94.7 75 62.7
Prupe.4G007000 Prunus persica HOM05D002232 ORTHO05D002323 3.0e-18 94.7 75 65.3
HanXRQChr16g0516411 Helianthus annuus HOM05D002232 ORTHO05D002323 4.0e-18 94.4 76 69.7
MD10G1336500 Malus domestica HOM05D002232 ORTHO05D002323 4.0e-18 94.4 75 61.3
HanXRQChr15g0470291 Helianthus annuus HOM05D002232 ORTHO05D002323 5.2e-18 94.0 75 68.0
CiPaw.09G105600 Carya illinoinensis HOM05D002232 ORTHO05D002323 6.8e-18 93.6 75 61.3
Duzib192G0830 Durio zibethinus HOM05D002232 ORTHO05D002323 6.8e-18 93.6 75 60.0
Lsat_1_v5_gn_7_14141 Lactuca sativa HOM05D002232 ORTHO05D002323 6.8e-18 93.6 74 63.5
Thecc.06G237000 Theobroma cacao HOM05D002232 ORTHO05D002323 6.8e-18 93.6 75 61.3
MSTRG.14601 Avicennia marina HOM05D002232 ORTHO05D002323 8.9e-18 93.2 75 62.7
Peaxi162Scf00576g00123 Petunia axillaris HOM05D002232 ORTHO05D002323 8.9e-18 93.2 75 60.0
A04p27220 Brassica napus HOM05D002232 ORTHO05D002323 1.2e-17 92.8 54 85.2
BraA04t18220Z Brassica rapa HOM05D002232 ORTHO05D002323 1.2e-17 92.8 54 85.2
Rhsim13G0143000 Rhododendron simsii HOM05D002232 ORTHO05D002323 1.2e-17 92.8 75 58.7
Sabra16G0013100 Salix brachista HOM05D002232 ORTHO05D002323 1.2e-17 92.8 75 61.3
SGA_v2.0_scaffold7G03716 Striga asiatica HOM05D002232 ORTHO05D002323 1.2e-17 92.8 75 64.0
THA.LOC104814481 Tarenaya hassleriana HOM05D002232 ORTHO05D002323 1.2e-17 92.8 72 68.1
C01p26420 Brassica napus HOM05D002232 ORTHO05D002323 1.5e-17 92.4 75 62.7
BraA01t02025Z Brassica rapa HOM05D002232 ORTHO05D002323 1.5e-17 92.4 75 62.7
TWI38G1818 Tripterygium wilfordii HOM05D002232 ORTHO05D002323 1.5e-17 92.4 75 60.0
Duzib235G0826 Durio zibethinus HOM05D002232 ORTHO05D002323 2.0e-17 92.0 75 61.3
C07p47880 Brassica napus HOM05D002232 ORTHO05D002323 2.6e-17 91.7 75 64.0
BolC7t45310H Brassica oleracea HOM05D002232 ORTHO05D002323 2.6e-17 91.7 75 64.0
CSS0021431 Camellia sinensis var. sinensis HOM05D002232 ORTHO05D002323 2.6e-17 91.7 75 58.7
Cfa000068 Carpinus fangiana HOM05D002232 ORTHO05D002323 2.6e-17 91.7 75 62.7
Thhalv10026264m.g Eutrema salsugineum HOM05D002232 ORTHO05D002323 2.6e-17 91.7 75 62.7
Oeu052855.1 Olea europaea HOM05D002232 ORTHO05D002323 2.6e-17 91.7 72 62.5
Oeu052867.1 Olea europaea HOM05D002232 ORTHO05D002323 2.6e-17 91.7 72 62.5
A03p49820 Brassica napus HOM05D002232 ORTHO05D002323 3.4e-17 91.3 75 64.0
CSS0010026 Camellia sinensis var. sinensis HOM05D002232 ORTHO05D002323 3.4e-17 91.3 75 60.0
Migut.M01427 Erythranthe guttata HOM05D002232 ORTHO05D002323 3.4e-17 91.3 72 63.9
A01p21150 Brassica napus HOM05D002232 ORTHO05D002323 4.4e-17 90.9 75 62.7
CSS0018375 Camellia sinensis var. sinensis HOM05D002232 ORTHO05D002323 4.4e-17 90.9 75 58.7
Eucgr.D01440 Eucalyptus grandis HOM05D002232 ORTHO05D002323 4.4e-17 90.9 75 62.7
QL05p068341 Quercus lobata HOM05D002232 ORTHO05D002323 4.4e-17 90.9 75 58.7
BcaNung00196 Brassica carinata HOM05D002232 ORTHO05D002323 5.7e-17 90.5 76 61.8
CiPaw.10G079800 Carya illinoinensis HOM05D002232 ORTHO05D002323 5.7e-17 90.5 75 58.7
Gohir.D10G008200 Gossypium hirsutum HOM05D002232 ORTHO05D002323 5.7e-17 90.5 75 58.7
Gorai.011G008900 Gossypium raimondii HOM05D002232 ORTHO05D002323 5.7e-17 90.5 75 58.7
Nitab4.5_0002499g0010 Nicotiana tabacum HOM05D002232 ORTHO05D002323 5.7e-17 90.5 75 58.7
QL05p068828 Quercus lobata HOM05D002232 ORTHO05D002323 5.7e-17 90.5 75 57.3
C04p64730 Brassica napus HOM05D002232 ORTHO05D002323 7.5e-17 90.1 54 81.5
Lj2C259T6 Lonicera japonica HOM05D002232 ORTHO05D002323 7.5e-17 90.1 75 64.0
Nitab4.5_0002478g0020 Nicotiana tabacum HOM05D002232 ORTHO05D002323 9.8e-17 89.7 75 58.7
Nitab4.5_0008857g0020 Nicotiana tabacum HOM05D002232 ORTHO05D002323 9.8e-17 89.7 75 58.7
BcaC02g07672 Brassica carinata HOM05D002232 ORTHO05D002323 1.3e-16 89.4 54 79.6
BcaC07g37987 Brassica carinata HOM05D002232 ORTHO05D002323 1.3e-16 89.4 75 58.7
A08p12200 Brassica napus HOM05D002232 ORTHO05D002323 1.3e-16 89.4 75 58.7
BolC4t27951H Brassica oleracea HOM05D002232 ORTHO05D002323 1.3e-16 89.4 54 79.6
BolC8t48368H Brassica oleracea HOM05D002232 ORTHO05D002323 1.3e-16 89.4 75 58.7
BraA08t33238Z Brassica rapa HOM05D002232 ORTHO05D002323 1.3e-16 89.4 75 58.7
Haze_06978 Corylus avellana HOM05D002232 ORTHO05D002323 1.3e-16 89.4 78 59.0
Peaxi162Scf00008g00011 Petunia axillaris HOM05D002232 ORTHO05D002323 1.7e-16 89.0 75 57.3
TPR.G10562 Trifolium pratense HOM05D002232 ORTHO05D002323 1.7e-16 89.0 75 61.3
BraA03t14077Z Brassica rapa HOM05D002232 ORTHO05D002323 2.2e-16 88.6 75 61.3
FvH4_3g00580 Fragaria vesca HOM05D002232 ORTHO05D002323 2.8e-16 88.2 78 59.0
Sp7g14980 Schrenkiella parvula HOM05D002232 ORTHO05D002323 2.8e-16 88.2 75 62.7
TWI63G1153 Tripterygium wilfordii HOM05D002232 ORTHO05D002323 2.8e-16 88.2 75 57.3
vmacro03627 Vaccinium macrocarpon HOM05D002232 ORTHO05D002323 2.8e-16 88.2 75 57.3
Gohir.A10G008400 Gossypium hirsutum HOM05D002232 ORTHO05D002323 3.7e-16 87.8 75 57.3
RcHm_v2.0_Chr5g0000791 Rosa chinensis HOM05D002232 ORTHO05D002323 3.7e-16 87.8 78 60.3
FAN21G2187 Fragaria x ananassa HOM05D002232 ORTHO05D002323 4.9e-16 87.4 78 59.0
SalBow1G4485 Salvia bowleyana HOM05D002232 ORTHO05D002323 4.9e-16 87.4 73 63.0
FAN25G2605 Fragaria x ananassa HOM05D002232 ORTHO05D002323 1.1e-15 86.3 78 57.7
Lsat_1_v5_gn_4_63540 Lactuca sativa HOM05D002232 ORTHO05D002323 1.1e-15 86.3 75 60.0
PGSC0003DMG400008455 Solanum tuberosum HOM05D002232 ORTHO05D002323 1.1e-15 86.3 75 57.3
Ca_00745_v3 Cicer arietinum L. HOM05D002232 ORTHO05D002323 1.4e-15 85.9 75 58.7
BcaC09g50344 Brassica carinata HOM05D002232 ORTHO05D002323 1.8e-15 85.5 75 60.0
BolC1t02589H Brassica oleracea HOM05D002232 ORTHO05D002323 1.8e-15 85.5 75 60.0
Sed0023330 Sechium edule HOM05D002232 ORTHO05D002323 1.8e-15 85.5 75 54.7
Lalb_Chr15g0088091 Lupinus albus HOM05D002232 ORTHO05D002323 2.4e-15 85.1 73 56.2
Lj6g0005556 Lotus japonicus HOM05D002232 ORTHO05D002323 3.2e-15 84.7 75 57.3
ECA247G0345 Erigeron canadensis HOM05D002232 ORTHO05D002323 5.4e-15 84.0 73 63.0
Glyma.17G007400 Glycine max HOM05D002232 ORTHO05D002323 7.0e-15 83.6 75 57.3
TAR627G0286 Trochodendron aralioides HOM05D002232 ORTHO05D002323 7.0e-15 83.6 69 59.4
unitig_52.g17559 Utricularia gibba HOM05D002232 ORTHO05D002323 7.0e-15 83.6 76 56.6
ClCG01G010680 Citrullus lanatus HOM05D002232 ORTHO05D002323 9.2e-15 83.2 75 53.3
CsaV3_1G015820 Cucumis sativus L. HOM05D002232 ORTHO05D002323 9.2e-15 83.2 75 53.3
CsaV3_UNG057470 Cucumis sativus L. HOM05D002232 ORTHO05D002323 9.2e-15 83.2 75 53.3
Glyma.07G266800 Glycine max HOM05D002232 ORTHO05D002323 1.2e-14 82.8 75 57.3
Solyc11g012590.3 Solanum lycopersicum HOM05D002232 ORTHO05D002323 1.2e-14 82.8 75 56.0
PGSC0003DMG400013293 Solanum tuberosum HOM05D002232 ORTHO05D002323 1.2e-14 82.8 75 56.0
Sopen11g007320 Solanum pennellii HOM05D002232 ORTHO05D002323 1.6e-14 82.4 75 56.0
Glyma.15G116800 Glycine max HOM05D002232 ORTHO05D002323 2.7e-14 81.6 74 54.1
Psat1g173800 Pisum sativum HOM05D002232 ORTHO05D002323 2.7e-14 81.6 75 52.0
Lalb_Chr18g0057121 Lupinus albus HOM05D002232 ORTHO05D002323 5.9e-14 80.5 73 54.8
Lalb_Chr20g0119401 Lupinus albus HOM05D002232 ORTHO05D002323 5.9e-14 80.5 73 56.2
arahy.Tifrunner.gnm1.ann1.CIT971 Arachis hypogaea HOM05D002232 ORTHO05D002323 1.0e-13 79.7 75 53.3
arahy.Tifrunner.gnm1.ann1.HUVM91 Arachis hypogaea HOM05D002232 ORTHO05D002323 1.0e-13 79.7 75 53.3
Glyma.09G012200 Glycine max HOM05D002232 ORTHO05D002323 1.0e-13 79.7 74 52.7
TAR629G1247 Trochodendron aralioides HOM05D002232 ORTHO05D002323 1.0e-13 79.7 69 56.5
Medtr2g026530 Medicago truncatula HOM05D002232 ORTHO05D002323 1.7e-13 79.0 75 56.0
Nn1g03226 Nelumbo nucifera HOM05D002232 ORTHO05D002323 1.7e-13 79.0 72 56.9
Aa31LG2G12500 Aethionema arabicum HOM05D002232 ORTHO05D002323 2.9e-13 78.2 75 58.7
VMungo0540G2397 Vigna mungo HOM05D002232 ORTHO05D002323 3.9e-13 77.8 74 54.1
unitig_748.g7609 Utricularia gibba HOM05D002232 ORTHO05D002323 6.6e-13 77.0 77 51.9
ATR0624G041 Amborella trichopoda HOM05D002232 ORTHO05D002323 8.6e-13 76.6 75 49.3
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 1.1e-12 76.3 75 54.7
Phvul.003G085300 Phaseolus vulgaris HOM05D002232 ORTHO05D002323 2.5e-12 75.1 75 52.0
arahy.Tifrunner.gnm1.ann1.P2MSBR Arachis hypogaea HOM05D002232 ORTHO05D002323 3.3e-12 74.7 75 52.0
Aqoxy4G02232 Aquilegia oxysepala HOM05D002232 ORTHO05D002323 7.3e-12 73.6 70 51.4
Nn1g07471 Nelumbo nucifera HOM05D002232 ORTHO05D002323 9.5e-12 73.2 70 51.4
Ah.09g234050 Amaranthus hybridus HOM05D002232 ORTHO05D002323 1.6e-11 72.4 76 50.0
arahy.Tifrunner.gnm1.ann1.IMB79D Arachis hypogaea HOM05D002232 ORTHO05D002323 1.6e-11 72.4 75 48.0
PSO541G5294 Papaver somniferum HOM05D002232 ORTHO05D002323 1.6e-11 72.4 69 53.6
PSO675G9179 Papaver somniferum HOM05D002232 ORTHO05D002323 1.6e-11 72.4 69 53.6
arahy.Tifrunner.gnm1.ann1.2SA5CU Arachis hypogaea HOM05D002232 ORTHO05D002323 2.8e-11 71.6 75 48.0
arahy.Tifrunner.gnm1.ann1.I5W2ZB Arachis hypogaea HOM05D002232 ORTHO05D002323 3.6e-11 71.2 75 46.7
arahy.Tifrunner.gnm1.ann1.P6CEN8 Arachis hypogaea HOM05D002232 ORTHO05D002323 3.6e-11 71.2 75 48.0
arahy.Tifrunner.gnm1.ann1.83Q2SU Arachis hypogaea HOM05D002232 ORTHO05D002323 4.7e-11 70.9 75 46.7
EL10Ac8g20239 Beta vulgaris HOM05D002232 ORTHO05D002323 4.7e-11 70.9 76 48.7
CARHR222810 Cardamine hirsuta HOM05D002232 ORTHO05D002323 4.7e-11 70.9 54 63.0
Sc17g0007960 Simmondsia chinensis HOM05D002232 ORTHO05D002323 6.1e-11 70.5 77 50.6
arahy.Tifrunner.gnm1.ann1.PRG3TB Arachis hypogaea HOM05D002232 ORTHO05D002323 1.4e-10 69.3 75 46.7
CDE10G0578 Ceratophyllum demersum HOM05D002232 ORTHO05D002323 5.2e-10 67.4 58 51.7
arahy.Tifrunner.gnm1.ann1.FHVN9L Arachis hypogaea HOM05D002232 ORTHO05D002323 6.8e-10 67.0 75 44.0
AT4G16442 Arabidopsis thaliana HOM05D002232 ORTHO05D002323 8.9e-10 66.6 54 61.1
arahy.Tifrunner.gnm1.ann1.YVT93E Arachis hypogaea HOM05D002232 ORTHO05D002323 8.9e-10 66.6 75 44.0
Hund21140 Selenicereus undatus HOM05D002232 ORTHO05D002323 8.9e-10 66.6 77 48.1
arahy.Tifrunner.gnm1.ann1.6346UW Arachis hypogaea HOM05D002232 ORTHO05D002323 1.5e-09 65.9 75 45.3
Phvul.006G141200 Phaseolus vulgaris HOM05D002232 ORTHO05D002323 1.5e-09 65.9 49 61.2
Carub.0007s2508 Capsella rubella HOM05D002232 ORTHO05D002323 9.8e-09 63.2 54 55.6
AL7G38560 Arabidopsis lyrata HOM05D002232 ORTHO05D002323 1.3e-08 62.8 48 64.6
Os03g0196400 Oryza sativa ssp. japonica HOM05D002232 ORTHO05D002323 1.4e-07 59.3 76 43.4
Zm00001eb008140 Zea mays HOM05D002232 ORTHO05D002323 2.4e-07 58.5 73 42.5
arahy.Tifrunner.gnm1.ann1.GK41W1 Arachis hypogaea HOM05D002232 ORTHO05D002323 7.0e-07 57.0 68 42.6
Os12g0514300 Oryza sativa ssp. japonica HOM05D002232 ORTHO05D002323 7.0e-07 57.0 51 52.9
AUR62021829 Chenopodium quinoa HOM05D002232 ORTHO05D002323 9.2e-07 56.6 74 43.2
Zm00001eb410980 Zea mays HOM05D002232 ORTHO05D002323 9.2e-07 56.6 51 54.9
AUR62012828 Chenopodium quinoa HOM05D002232 ORTHO05D002323 1.6e-06 55.8 74 43.2
arahy.Tifrunner.gnm1.ann1.EWQ4Q7 Arachis hypogaea HOM05D002232 ORTHO05D002323 2.7e-06 55.1 75 42.7
arahy.Tifrunner.gnm1.ann1.JQVI6P Arachis hypogaea HOM05D002232 ORTHO05D002323 2.7e-06 55.1 75 42.7


User provided reference genes

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