Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05657 Brassica carinata HOM05D003485 ORTHO05D004004 2.2e-219 765.4 402 100.0
C03p23590 Brassica napus HOM05D003485 ORTHO05D004004 2.1e-217 758.8 403 99.5
BolC3t14754H Brassica oleracea HOM05D003485 ORTHO05D004004 2.1e-217 758.8 403 99.5
A03p20140 Brassica napus HOM05D003485 ORTHO05D004004 6.2e-206 720.7 404 95.5
BraA03t11264Z Brassica rapa HOM05D003485 ORTHO05D004004 1.1e-205 719.9 404 95.5
BcaB01g03837 Brassica carinata HOM05D003485 ORTHO05D004004 7.7e-180 634.0 426 81.2
Sp4g18720 Schrenkiella parvula HOM05D003485 ORTHO05D004004 5.9e-156 554.7 439 73.8
BcaB06g28940 Brassica carinata HOM05D003485 ORTHO05D004004 3.7e-150 535.4 432 73.4
BcaC02g07593 Brassica carinata HOM05D003485 ORTHO05D004004 1.6e-148 530.0 426 71.8
BolC4t28026H Brassica oleracea HOM05D003485 ORTHO05D004004 1.6e-148 530.0 426 71.8
BolC4t22814H Brassica oleracea HOM05D003485 ORTHO05D004004 5.6e-146 521.5 439 67.9
BraA04t18284Z Brassica rapa HOM05D003485 ORTHO05D004004 1.4e-144 516.9 427 70.0
CARHR130720 Cardamine hirsuta HOM05D003485 ORTHO05D004004 2.0e-143 513.1 435 67.8
BcaC02g11759 Brassica carinata HOM05D003485 ORTHO05D004004 7.5e-143 511.1 446 67.7
BcaB02g09354 Brassica carinata HOM05D003485 ORTHO05D004004 9.8e-143 510.8 436 69.5
BraA05t19893Z Brassica rapa HOM05D003485 ORTHO05D004004 7.8e-140 501.1 440 67.7
C04p11650 Brassica napus HOM05D003485 ORTHO05D004004 1.1e-138 497.3 438 66.9
AT2G36420 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 3.2e-133 479.2 438 65.8
Carub.0004s1823 Capsella rubella HOM05D003485 ORTHO05D004004 3.3e-130 469.2 454 63.0
AL4G32600 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 9.5e-130 467.6 443 63.0
A05p09350 Brassica napus HOM05D003485 ORTHO05D004004 5.8e-127 458.4 440 63.6
A04p27950 Brassica napus HOM05D003485 ORTHO05D004004 2.4e-72 276.9 207 74.4
Aa31LG5G21610 Aethionema arabicum HOM05D003485 ORTHO05D004004 9.4e-69 265.0 427 45.0
THA.LOC104805079 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.4e-56 224.6 467 40.9
THA.LOC104823464 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.9e-53 214.2 458 38.2
Sed0015592 Sechium edule HOM05D003485 ORTHO05D004004 7.7e-47 192.2 479 35.1
Duzib093G1418 Durio zibethinus HOM05D003485 ORTHO05D004004 2.2e-46 190.7 539 33.0
Sed0013820 Sechium edule HOM05D003485 ORTHO05D004004 8.5e-46 188.7 471 34.2
Haze_19558 Corylus avellana HOM05D003485 ORTHO05D004004 5.5e-45 186.0 534 32.2
Ciclev10011456m.g Citrus clementina HOM05D003485 ORTHO05D004004 7.2e-45 185.7 550 31.5
FvH4_6g18100 Fragaria vesca HOM05D003485 ORTHO05D004004 2.1e-44 184.1 529 31.9
VMungo1383G1455 Vigna mungo HOM05D003485 ORTHO05D004004 2.1e-44 184.1 520 32.9
FAN14G1728 Fragaria x ananassa HOM05D003485 ORTHO05D004004 4.7e-44 183.0 529 31.8
A04p27940 Brassica napus HOM05D003485 ORTHO05D004004 8.0e-44 182.2 142 72.5
Cpa.g.sc5.65 Carica papaya HOM05D003485 ORTHO05D004004 2.3e-43 180.6 563 30.9
Glyma.03G192000 Glycine max HOM05D003485 ORTHO05D004004 8.8e-43 178.7 525 31.8
CiPaw.09G009600 Carya illinoinensis HOM05D003485 ORTHO05D004004 1.2e-42 178.3 550 32.2
MELO3C024521.2 Cucumis melo HOM05D003485 ORTHO05D004004 1.2e-42 178.3 513 32.6
AL6G13180 Arabidopsis lyrata HOM05D003485 ORTHO05D004004 1.5e-42 177.9 537 35.2
ClCG04G009820 Citrullus lanatus HOM05D003485 ORTHO05D004004 5.7e-42 176.0 511 32.3
CsaV3_6G040450 Cucumis sativus L. HOM05D003485 ORTHO05D004004 5.7e-42 176.0 511 32.7
THA.LOC104816367 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 5.7e-42 176.0 539 33.4
Gorai.006G157500 Gossypium raimondii HOM05D003485 ORTHO05D004004 9.8e-42 175.3 519 32.9
Glyma.19G192500 Glycine max HOM05D003485 ORTHO05D004004 2.2e-41 174.1 533 31.7
FAN05G0153 Fragaria x ananassa HOM05D003485 ORTHO05D004004 3.7e-41 173.3 529 31.6
FAN05G0444 Fragaria x ananassa HOM05D003485 ORTHO05D004004 3.7e-41 173.3 529 31.6
Cfa016557 Carpinus fangiana HOM05D003485 ORTHO05D004004 4.8e-41 172.9 538 32.5
Gohir.A09G136100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.4e-40 171.4 517 32.5
FAN09G2203 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.8e-40 171.0 527 31.1
Manes.09G058764 Manihot esculenta HOM05D003485 ORTHO05D004004 1.8e-40 171.0 554 31.9
Lj1g0007531 Lotus japonicus HOM05D003485 ORTHO05D004004 4.1e-40 169.9 535 30.7
Gohir.D09G137200 Gossypium hirsutum HOM05D003485 ORTHO05D004004 5.4e-40 169.5 527 32.3
Prupe.7G115800 Prunus persica HOM05D003485 ORTHO05D004004 7.0e-40 169.1 564 30.9
FAN02G1693 Fragaria x ananassa HOM05D003485 ORTHO05D004004 1.2e-39 168.3 530 31.1
QL07p040106 Quercus lobata HOM05D003485 ORTHO05D004004 1.6e-39 167.9 560 31.4
Phvul.001G187300 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 2.0e-39 167.5 519 31.2
RcHm_v2.0_Chr3g0472371 Rosa chinensis HOM05D003485 ORTHO05D004004 2.7e-39 167.2 544 30.5
AT5G03670 Arabidopsis thaliana HOM05D003485 ORTHO05D004004 3.5e-39 166.8 536 34.1
MD14G1017300 Malus domestica HOM05D003485 ORTHO05D004004 3.5e-39 166.8 531 32.2
A03p01320 Brassica napus HOM05D003485 ORTHO05D004004 7.7e-39 165.6 522 33.7
C03p01670 Brassica napus HOM05D003485 ORTHO05D004004 7.7e-39 165.6 517 34.4
BolC3t12719H Brassica oleracea HOM05D003485 ORTHO05D004004 1.3e-38 164.9 517 34.4
Thhalv10016054m.g Eutrema salsugineum HOM05D003485 ORTHO05D004004 1.3e-38 164.9 532 32.9
BcaB01g05795 Brassica carinata HOM05D003485 ORTHO05D004004 1.7e-38 164.5 517 34.2
Lj5g0007324 Lotus japonicus HOM05D003485 ORTHO05D004004 1.7e-38 164.5 518 30.1
Thecc.05G083100 Theobroma cacao HOM05D003485 ORTHO05D004004 1.7e-38 164.5 538 32.3
CiPaw.10G006300 Carya illinoinensis HOM05D003485 ORTHO05D004004 2.3e-38 164.1 564 30.1
Gohir.A01G208100 Gossypium hirsutum HOM05D003485 ORTHO05D004004 2.3e-38 164.1 516 31.2
TWI74G0849 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 2.9e-38 163.7 564 30.0
MD12G1019500 Malus domestica HOM05D003485 ORTHO05D004004 3.8e-38 163.3 531 31.3
BolC9t60060H Brassica oleracea HOM05D003485 ORTHO05D004004 5.0e-38 162.9 515 33.0
BraA03t09512Z Brassica rapa HOM05D003485 ORTHO05D004004 5.0e-38 162.9 522 33.9
SalBow3G3191 Salvia bowleyana HOM05D003485 ORTHO05D004004 8.6e-38 162.2 435 34.5
Duzib128G0159 Durio zibethinus HOM05D003485 ORTHO05D004004 1.9e-37 161.0 540 31.5
Sed0026564 Sechium edule HOM05D003485 ORTHO05D004004 1.9e-37 161.0 448 32.4
BcaB01g05809 Brassica carinata HOM05D003485 ORTHO05D004004 3.2e-37 160.2 531 33.1
Duzib106G1512 Durio zibethinus HOM05D003485 ORTHO05D004004 3.2e-37 160.2 537 30.7
C09p73250 Brassica napus HOM05D003485 ORTHO05D004004 4.2e-37 159.8 510 33.1
Gorai.002G241600 Gossypium raimondii HOM05D003485 ORTHO05D004004 4.2e-37 159.8 517 30.6
Sp6g39060 Schrenkiella parvula HOM05D003485 ORTHO05D004004 4.2e-37 159.8 535 32.0
Gohir.D01G197500 Gossypium hirsutum HOM05D003485 ORTHO05D004004 5.5e-37 159.5 516 30.8
arahy.Tifrunner.gnm1.ann1.FM4PU3 Arachis hypogaea HOM05D003485 ORTHO05D004004 7.2e-37 159.1 495 32.5
Nitab4.5_0000132g0120 Nicotiana tabacum HOM05D003485 ORTHO05D004004 1.2e-36 158.3 441 32.4
Aa31LG1G21550 Aethionema arabicum HOM05D003485 ORTHO05D004004 1.6e-36 157.9 499 33.3
Medtr1g060890 Medicago truncatula HOM05D003485 ORTHO05D004004 4.7e-36 156.4 544 29.0
Phvul.007G222400 Phaseolus vulgaris HOM05D003485 ORTHO05D004004 8.0e-36 155.6 486 30.5
BcaC06g32076 Brassica carinata HOM05D003485 ORTHO05D004004 1.0e-35 155.2 522 33.5
ClCG10G019240 Citrullus lanatus HOM05D003485 ORTHO05D004004 1.0e-35 155.2 476 31.5
Nitab4.5_0003454g0060 Nicotiana tabacum HOM05D003485 ORTHO05D004004 1.8e-35 154.5 495 29.9
THA.LOC104826931 Tarenaya hassleriana HOM05D003485 ORTHO05D004004 1.8e-35 154.5 535 31.0
Lsat_1_v5_gn_2_20881 Lactuca sativa HOM05D003485 ORTHO05D004004 3.0e-35 153.7 501 30.7
Manes.08G022100 Manihot esculenta HOM05D003485 ORTHO05D004004 3.0e-35 153.7 544 29.4
Hma1.2p1_0084F.1_g043350 Hydrangea macrophylla HOM05D003485 ORTHO05D004004 4.0e-35 153.3 514 30.9
Oeu032419.1 Olea europaea HOM05D003485 ORTHO05D004004 5.2e-35 152.9 479 29.9
TWI77G0029 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 5.2e-35 152.9 521 30.7
GSVIVG01033797001 Vitis vinifera HOM05D003485 ORTHO05D004004 5.2e-35 152.9 461 33.0
MSTRG.5814 Avicennia marina HOM05D003485 ORTHO05D004004 6.8e-35 152.5 507 31.4
arahy.Tifrunner.gnm1.ann1.UZ5M1P Arachis hypogaea HOM05D003485 ORTHO05D004004 1.2e-34 151.8 494 32.0
Sabra06G0090200 Salix brachista HOM05D003485 ORTHO05D004004 1.5e-34 151.4 553 28.4
Solyc09g009220.4 Solanum lycopersicum HOM05D003485 ORTHO05D004004 1.5e-34 151.4 502 30.1
PGSC0003DMG400028260 Solanum tuberosum HOM05D003485 ORTHO05D004004 2.0e-34 151.0 438 32.9
Atru.chr8.1615 Acer truncatum HOM05D003485 ORTHO05D004004 3.4e-34 150.2 553 31.3
MSTRG.26648 Avicennia marina HOM05D003485 ORTHO05D004004 3.4e-34 150.2 490 30.0
TWI53G1381 Tripterygium wilfordii HOM05D003485 ORTHO05D004004 4.4e-34 149.8 559 29.7
CsaV3_3G036950 Cucumis sativus L. HOM05D003485 ORTHO05D004004 5.7e-34 149.4 480 29.8
PGR004G2186 Punica granatum HOM05D003485 ORTHO05D004004 7.5e-34 149.1 487 32.4
TPR.G5671 Trifolium pratense HOM05D003485 ORTHO05D004004 7.5e-34 149.1 540 28.7
Glyma.10G067100 Glycine max HOM05D003485 ORTHO05D004004 1.7e-33 147.9 521 29.2
Potri.006G115300 Populus trichocarpa HOM05D003485 ORTHO05D004004 2.8e-33 147.1 559 29.7
PGSC0003DMG400002678 Solanum tuberosum HOM05D003485 ORTHO05D004004 2.8e-33 147.1 497 30.0
Sopen10g033000 Solanum pennellii HOM05D003485 ORTHO05D004004 7.0e-32 142.5 419 32.9
Sed0007624 Sechium edule HOM05D003485 ORTHO05D004004 9.2e-32 142.1 420 33.6
Oeu040530.1 Olea europaea HOM05D003485 ORTHO05D004004 1.2e-31 141.7 491 32.0
CSS0002533 Camellia sinensis var. sinensis HOM05D003485 ORTHO05D004004 2.0e-31 141.0 506 30.6
MSTRG.10354 Avicennia marina HOM05D003485 ORTHO05D004004 2.7e-31 140.6 474 29.7
A10p32430 Brassica napus HOM05D003485 ORTHO05D004004 3.5e-31 140.2 513 31.2
BraA10t45283Z Brassica rapa HOM05D003485 ORTHO05D004004 3.5e-31 140.2 513 31.2
PGR142G1952 Punica granatum HOM05D003485 ORTHO05D004004 3.5e-31 140.2 521 30.3
TAR369G0025 Trochodendron aralioides HOM05D003485 ORTHO05D004004 5.9e-31 139.4 520 29.8
VMungo0720G2646 Vigna mungo HOM05D003485 ORTHO05D004004 5.9e-31 139.4 470 31.3
Lsat_1_v5_gn_1_48761 Lactuca sativa HOM05D003485 ORTHO05D004004 1.7e-30 137.9 506 27.7
DCAR_013367 Daucus carota HOM05D003485 ORTHO05D004004 2.9e-30 137.1 484 31.0
Glyma.13G152100 Glycine max HOM05D003485 ORTHO05D004004 5.0e-30 136.3 512 28.7
HanXRQChr01g0028981 Helianthus annuus HOM05D003485 ORTHO05D004004 5.0e-30 136.3 484 28.7
COL.COLO4_29799 Corchorus olitorius HOM05D003485 ORTHO05D004004 1.9e-29 134.4 436 31.2
Actinidia10397 Actinidia chinensis HOM05D003485 ORTHO05D004004 2.5e-29 134.0 513 29.4
Solyc10g083530.2 Solanum lycopersicum HOM05D003485 ORTHO05D004004 2.5e-29 134.0 424 32.3
Lalb_Chr02g0155221 Lupinus albus HOM05D003485 ORTHO05D004004 4.3e-29 133.3 529 29.5
Peaxi162Scf00068g00085 Petunia axillaris HOM05D003485 ORTHO05D004004 4.3e-29 133.3 508 29.9
Lalb_Chr20g0112141 Lupinus albus HOM05D003485 ORTHO05D004004 9.5e-29 132.1 510 30.6
Nitab4.5_0004489g0010 Nicotiana tabacum HOM05D003485 ORTHO05D004004 1.2e-28 131.7 493 28.4
EL10Ac7g16972 Beta vulgaris HOM05D003485 ORTHO05D004004 1.4e-27 128.3 520 28.7
HanXRQChr11g0351281 Helianthus annuus HOM05D003485 ORTHO05D004004 2.3e-27 127.5 471 30.4
TAR623G1754 Trochodendron aralioides HOM05D003485 ORTHO05D004004 2.3e-27 127.5 529 29.3
CAN.G824.15 Capsicum annuum HOM05D003485 ORTHO05D004004 6.8e-27 125.9 508 27.2
Lalb_Chr01g0018291 Lupinus albus HOM05D003485 ORTHO05D004004 3.4e-26 123.6 523 28.3
vmacro07380 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 4.4e-26 123.2 475 30.1
Sc02g0001100 Simmondsia chinensis HOM05D003485 ORTHO05D004004 5.7e-26 122.9 520 27.5
Ah.08g210850 Amaranthus hybridus HOM05D003485 ORTHO05D004004 1.3e-25 121.7 521 27.4
Dinv19839 Davidia involucrata HOM05D003485 ORTHO05D004004 2.2e-25 120.9 275 35.3
Cc06_g05360 Coffea canephora HOM05D003485 ORTHO05D004004 4.9e-25 119.8 562 29.4
Eucgr.A01536 Eucalyptus grandis HOM05D003485 ORTHO05D004004 5.4e-24 116.3 498 27.7
Eucgr.K02068 Eucalyptus grandis HOM05D003485 ORTHO05D004004 4.6e-23 113.2 472 31.1
Gohir.A01G138700 Gossypium hirsutum HOM05D003485 ORTHO05D004004 5.9e-23 112.8 453 30.5
TPR.G25373 Trifolium pratense HOM05D003485 ORTHO05D004004 5.9e-23 112.8 284 34.2
Rhsim03G0079600 Rhododendron simsii HOM05D003485 ORTHO05D004004 7.8e-23 112.5 495 28.3
CARHR209630 Cardamine hirsuta HOM05D003485 ORTHO05D004004 1.3e-22 111.7 368 32.9
DCAR_020774 Daucus carota HOM05D003485 ORTHO05D004004 1.3e-22 111.7 513 28.7
Gohir.D01G128400 Gossypium hirsutum HOM05D003485 ORTHO05D004004 1.3e-22 111.7 452 27.9
Aqoxy2G01359 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 2.3e-22 110.9 571 26.8
arahy.Tifrunner.gnm1.ann1.LG3GGS Arachis hypogaea HOM05D003485 ORTHO05D004004 3.0e-22 110.5 522 28.5
arahy.Tifrunner.gnm1.ann1.W633S9 Arachis hypogaea HOM05D003485 ORTHO05D004004 3.0e-22 110.5 522 28.5
Gorai.002G159100 Gossypium raimondii HOM05D003485 ORTHO05D004004 6.6e-22 109.4 452 28.5
Nn2g14048 Nelumbo nucifera HOM05D003485 ORTHO05D004004 2.5e-21 107.5 338 30.5
PSO384G0133 Papaver somniferum HOM05D003485 ORTHO05D004004 5.6e-21 106.3 567 26.5
Oeu040808.2 Olea europaea HOM05D003485 ORTHO05D004004 7.3e-21 105.9 492 27.6
SGA_v2.0_scaffold184G39942 Striga asiatica HOM05D003485 ORTHO05D004004 7.3e-21 105.9 351 31.9
PSO339G0389 Papaver somniferum HOM05D003485 ORTHO05D004004 1.8e-19 101.3 562 26.2
Rhsim04G0135000 Rhododendron simsii HOM05D003485 ORTHO05D004004 1.8e-19 101.3 579 26.9
Migut.L01764 Erythranthe guttata HOM05D003485 ORTHO05D004004 6.8e-19 99.4 407 27.5
Psat6g080680 Pisum sativum HOM05D003485 ORTHO05D004004 2.0e-18 97.8 351 29.1
Psat3g035000 Pisum sativum HOM05D003485 ORTHO05D004004 2.6e-18 97.4 280 33.6
Actinidia08428 Actinidia chinensis HOM05D003485 ORTHO05D004004 7.5e-18 95.9 453 28.3
Actinidia31285 Actinidia chinensis HOM05D003485 ORTHO05D004004 6.4e-17 92.8 286 29.7
ECA248G2160 Erigeron canadensis HOM05D003485 ORTHO05D004004 8.3e-17 92.4 382 27.0
Migut.J00977 Erythranthe guttata HOM05D003485 ORTHO05D004004 1.4e-16 91.7 268 31.3
ECA238G4534 Erigeron canadensis HOM05D003485 ORTHO05D004004 2.4e-16 90.9 261 34.9
MBI01_g46563_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 4.1e-16 90.1 167 35.3
MBI17_g01908_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 7.0e-16 89.4 498 25.5
Nn6g35018 Nelumbo nucifera HOM05D003485 ORTHO05D004004 9.2e-16 89.0 148 40.5
Carub.0006s0258 Capsella rubella HOM05D003485 ORTHO05D004004 1.2e-15 88.6 282 34.8
Lj2A130G48 Lonicera japonica HOM05D003485 ORTHO05D004004 1.6e-15 88.2 427 29.5
Aqoxy4G02862 Aquilegia oxysepala HOM05D003485 ORTHO05D004004 3.5e-15 87.0 522 24.7
Ca_08971_v3 Cicer arietinum L. HOM05D003485 ORTHO05D004004 6.0e-15 86.3 286 30.8
unitig_578.g15766 Utricularia gibba HOM05D003485 ORTHO05D004004 1.0e-14 85.5 306 29.4
Sopen09g003950 Solanum pennellii HOM05D003485 ORTHO05D004004 1.7e-14 84.7 278 29.5
SalBow5G3755 Salvia bowleyana HOM05D003485 ORTHO05D004004 3.9e-14 83.6 425 28.2
MELO3C000161.2 Cucumis melo HOM05D003485 ORTHO05D004004 2.5e-13 80.9 216 33.8
Dinv21244 Davidia involucrata HOM05D003485 ORTHO05D004004 1.6e-12 78.2 290 34.1
SGA_v2.0_scaffold40G15384 Striga asiatica HOM05D003485 ORTHO05D004004 8.1e-12 75.9 244 33.2
MBI01_g18815_MAGBIO Magnolia biondii HOM05D003485 ORTHO05D004004 1.1e-11 75.5 262 32.1
unitig_26.g9244 Utricularia gibba HOM05D003485 ORTHO05D004004 1.4e-11 75.1 303 29.0
AUR62043111 Chenopodium quinoa HOM05D003485 ORTHO05D004004 2.3e-11 74.3 224 29.9
HanXRQChr11g0351271 Helianthus annuus HOM05D003485 ORTHO05D004004 7.5e-10 69.3 215 32.1
DCAR_007743 Daucus carota HOM05D003485 ORTHO05D004004 4.9e-09 66.6 431 26.2
vmacro08822 Vaccinium macrocarpon HOM05D003485 ORTHO05D004004 4.6e-07 60.1 282 29.8


User provided reference genes

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