Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05644 Brassica carinata HOM05D007554 ORTHO05D009569 2.3e-155 552.4 315 100.0
BolC3t14766H Brassica oleracea HOM05D007554 ORTHO05D009569 3.7e-153 545.0 316 97.2
C03p23720 Brassica napus HOM05D007554 ORTHO05D009569 3.1e-152 542.0 316 98.4
BcaB01g03819 Brassica carinata HOM05D007554 ORTHO05D009569 5.7e-114 414.8 317 79.2
BraA03t11273Z Brassica rapa HOM05D007554 ORTHO05D009569 1.7e-110 403.3 307 76.9
A03p20230 Brassica napus HOM05D007554 ORTHO05D009569 1.2e-106 390.6 332 71.4
Thhalv10017640m.g Eutrema salsugineum HOM05D007554 ORTHO05D009569 9.5e-85 317.8 302 62.3
AL4G32830 Arabidopsis lyrata HOM05D007554 ORTHO05D009569 1.9e-77 293.5 301 60.8
A05p09220 Brassica napus HOM05D007554 ORTHO05D009569 9.6e-77 291.2 302 64.6
Sp4g18930 Schrenkiella parvula HOM05D007554 ORTHO05D009569 4.0e-75 285.8 302 58.3
BraA05t19878Z Brassica rapa HOM05D007554 ORTHO05D009569 1.5e-74 283.9 302 64.2
BcaC02g11778 Brassica carinata HOM05D007554 ORTHO05D009569 9.9e-74 281.2 333 58.3
C04p11490 Brassica napus HOM05D007554 ORTHO05D009569 9.9e-74 281.2 333 58.3
BolC4t22799H Brassica oleracea HOM05D007554 ORTHO05D009569 9.9e-74 281.2 333 58.3
CARHR130930 Cardamine hirsuta HOM05D007554 ORTHO05D009569 4.9e-73 278.9 301 59.1
BcaB02g09343 Brassica carinata HOM05D007554 ORTHO05D009569 6.4e-73 278.5 335 58.8
AT2G36650 Arabidopsis thaliana HOM05D007554 ORTHO05D009569 8.4e-73 278.1 302 62.3
Carub.0004s1847 Capsella rubella HOM05D007554 ORTHO05D009569 4.2e-72 275.8 305 54.4
Aa31LG5G21850 Aethionema arabicum HOM05D007554 ORTHO05D009569 1.0e-49 201.4 297 51.2
THA.LOC104823478 Tarenaya hassleriana HOM05D007554 ORTHO05D009569 5.1e-38 162.5 304 37.8
Atru.chr8.1675 Acer truncatum HOM05D007554 ORTHO05D009569 5.3e-27 125.9 325 31.7
FAN05G0950 Fragaria x ananassa HOM05D000031 ORTHO05D001864 3.4e-26 123.2 319 31.0
FAN05G4577 Fragaria x ananassa HOM05D007554 ORTHO05D009569 3.4e-26 123.2 319 31.0
FAN09G2175 Fragaria x ananassa HOM05D000031 ORTHO05D001864 1.7e-25 120.9 319 30.4
FvH4_6g17340 Fragaria vesca HOM05D007554 ORTHO05D009569 2.9e-25 120.2 319 30.7
FAN05G5377 Fragaria x ananassa HOM05D007554 ORTHO05D009569 6.5e-25 119.0 319 30.4
CSS0026822 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 1.6e-23 114.4 336 28.3
Manes.09G058083 Manihot esculenta HOM05D007554 ORTHO05D009569 2.7e-23 113.6 315 28.6
CSS0026453 Camellia sinensis var. sinensis HOM05D007554 ORTHO05D009569 2.3e-22 110.5 335 27.5
GSVIVG01033729001 Vitis vinifera HOM05D007554 ORTHO05D009569 5.2e-22 109.4 231 34.6
Lsat_1_v5_gn_2_24301 Lactuca sativa HOM05D007554 ORTHO05D009569 4.4e-21 106.3 253 30.8
Gorai.006G159800 Gossypium raimondii HOM05D007554 ORTHO05D009569 5.7e-21 105.9 225 33.3
Gohir.D09G139300 Gossypium hirsutum HOM05D007554 ORTHO05D009569 7.4e-21 105.5 225 33.3
Lj2A125T59 Lonicera japonica HOM05D007554 ORTHO05D009569 9.7e-21 105.1 300 29.3
HanXRQChr06g0181651 Helianthus annuus HOM05D007554 ORTHO05D009569 1.3e-20 104.8 229 32.8
TAR623G1240 Trochodendron aralioides HOM05D007554 ORTHO05D009569 2.8e-20 103.6 231 32.0
Prupe.7G122100 Prunus persica HOM05D007554 ORTHO05D009569 3.7e-20 103.2 321 26.8
Cpa.g.sc5.117 Carica papaya HOM05D007554 ORTHO05D009569 6.3e-20 102.4 318 26.7
Gohir.A09G143100 Gossypium hirsutum HOM05D007554 ORTHO05D009569 1.1e-19 101.7 227 32.2
Medtr1g061840 Medicago truncatula HOM05D007554 ORTHO05D009569 1.1e-19 101.7 325 25.8
Thecc.05G076700 Theobroma cacao HOM05D007554 ORTHO05D009569 1.4e-19 101.3 321 27.7
QL07p041193 Quercus lobata HOM05D007554 ORTHO05D009569 1.8e-19 100.9 226 30.5
Duzib106G2002 Durio zibethinus HOM05D007554 ORTHO05D009569 5.3e-19 99.4 314 27.7
Ciclev10011754m.g Citrus clementina HOM05D007554 ORTHO05D009569 7.0e-19 99.0 331 27.2
COL.COLO4_22265 Corchorus olitorius HOM05D007554 ORTHO05D008700 9.1e-19 98.6 325 26.5
ECA238G1996 Erigeron canadensis HOM05D001775 ORTHO05D008700 9.1e-19 98.6 228 32.5
Eucgr.K02413 Eucalyptus grandis HOM05D007554 ORTHO05D009569 2.0e-18 97.4 361 26.9
PGR142G2625 Punica granatum HOM05D007554 ORTHO05D009569 4.5e-18 96.3 301 27.6
RcHm_v2.0_Chr3g0471481 Rosa chinensis HOM05D007554 ORTHO05D009569 5.9e-18 95.9 310 28.7
Glyma.03G188800 Glycine max HOM05D007554 ORTHO05D009569 2.2e-17 94.0 309 28.2
MD12G1101400 Malus domestica HOM05D007554 ORTHO05D009569 2.2e-17 94.0 235 31.1
Peaxi162Scf01063g00111 Petunia axillaris HOM05D007554 ORTHO05D009569 2.2e-17 94.0 225 28.4
CiPaw.09G006000 Carya illinoinensis HOM05D007554 ORTHO05D009569 2.9e-17 93.6 242 27.7
Potri.005G098400 Populus trichocarpa HOM05D007554 ORTHO05D009569 6.5e-17 92.4 248 27.8
PGSC0003DMG401012981 Solanum tuberosum HOM05D007554 ORTHO05D009569 2.5e-16 90.5 225 28.9
FAN14G0141 Fragaria x ananassa HOM05D000031 ORTHO05D001864 5.5e-16 89.4 224 32.1
Cc06_g04860 Coffea canephora HOM05D007554 ORTHO05D009569 7.2e-16 89.0 326 23.6
vmacro08807 Vaccinium macrocarpon HOM05D007554 ORTHO05D009569 1.2e-15 88.2 329 26.7
TWI74G1006 Tripterygium wilfordii HOM05D007554 ORTHO05D009569 2.7e-15 87.0 226 27.9
Sed0015840 Sechium edule HOM05D000031 ORTHO05D001864 1.0e-14 85.1 178 33.1
Glyma.10G063900 Glycine max HOM05D007554 ORTHO05D009569 1.8e-14 84.3 241 27.8
Solyc09g008660.3 Solanum lycopersicum HOM05D007554 ORTHO05D009569 2.3e-14 84.0 204 29.9
Phvul.007G225500 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 5.2e-14 82.8 251 28.7
Psat0s3550g0120 Pisum sativum HOM05D007554 ORTHO05D009569 1.2e-13 81.6 246 27.6
Glyma.13G148500 Glycine max HOM05D007554 ORTHO05D009569 1.5e-13 81.3 253 27.7
DCAR_015020 Daucus carota HOM05D007554 ORTHO05D009569 3.3e-13 80.1 319 24.5
Aqoxy2G01532 Aquilegia oxysepala HOM05D007554 ORTHO05D009569 4.4e-13 79.7 230 27.8
Ca_11566_v3 Cicer arietinum L. HOM05D007554 ORTHO05D008700 4.4e-13 79.7 195 28.2
VMungo0720G0941 Vigna mungo HOM05D007554 ORTHO05D009569 7.5e-13 79.0 242 26.0
Cfa016496 Carpinus fangiana HOM05D001775 ORTHO05D008700 9.7e-13 78.6 229 29.7
Phvul.001G184200 Phaseolus vulgaris HOM05D007554 ORTHO05D009569 1.3e-12 78.2 322 24.5
CAN.G1830.10 Capsicum annuum HOM05D007554 ORTHO05D009569 2.2e-12 77.4 215 29.8
TPR.G30363 Trifolium pratense HOM05D007554 ORTHO05D009569 2.8e-12 77.0 328 23.8
Lj1g0019279 Lotus japonicus HOM05D007554 ORTHO05D009569 3.7e-12 76.6 315 25.7
CsaV3_3G036620 Cucumis sativus L. HOM05D007554 ORTHO05D009569 8.2e-12 75.5 196 29.6
MELO3C009416.2 Cucumis melo HOM05D007554 ORTHO05D009569 2.4e-11 73.9 177 30.5
Sabra05G0080800 Salix brachista HOM05D007554 ORTHO05D009569 2.4e-11 73.9 243 25.9
Lj5g0018631 Lotus japonicus HOM05D007554 ORTHO05D009569 3.1e-11 73.6 238 26.5
Ah.15g091360 Amaranthus hybridus HOM05D007554 ORTHO05D009569 2.0e-10 70.9 227 27.8
Glyma.19G189000 Glycine max HOM05D007554 ORTHO05D009569 3.5e-10 70.1 320 24.1
Nn2g13923 Nelumbo nucifera HOM05D007554 ORTHO05D009569 4.5e-10 69.7 214 29.0
AUR62040182 Chenopodium quinoa HOM05D007554 ORTHO05D009569 5.9e-10 69.3 304 22.7
arahy.Tifrunner.gnm1.ann1.WUL3RA Arachis hypogaea HOM05D007554 ORTHO05D009569 7.7e-10 68.9 226 28.3
AUR62044070 Chenopodium quinoa HOM05D007554 ORTHO05D009569 7.7e-10 68.9 304 23.0
BcaC02g11783 Brassica carinata HOM05D007554 ORTHO05D009569 1.0e-09 68.6 48 75.0
ClCG10G019580 Citrullus lanatus HOM05D000031 ORTHO05D001864 1.7e-09 67.8 114 33.3
Sopen09g003460 Solanum pennellii HOM05D007554 ORTHO05D009569 4.2e-08 63.2 206 26.2
arahy.Tifrunner.gnm1.ann1.TQ9G2A Arachis hypogaea HOM05D007554 ORTHO05D009569 5.5e-08 62.8 223 28.3
Dinv35842 Davidia involucrata HOM05D007554 ORTHO05D009569 5.5e-08 62.8 328 23.2
arahy.Tifrunner.gnm1.ann1.561HRF Arachis hypogaea HOM05D000566 ORTHO05D004798 9.4e-08 62.0 256 25.8
Ca_01174_v3 Cicer arietinum L. HOM05D000566 ORTHO05D004798 9.4e-08 62.0 241 28.2
Actinidia21725 Actinidia chinensis HOM05D000566 ORTHO05D004798 1.6e-07 61.2 254 26.4
PSO339G0406 Papaver somniferum HOM05D007554 ORTHO05D009569 2.7e-07 60.5 160 25.6
Rhsim08G0228800 Rhododendron simsii HOM05D000566 ORTHO05D004798 2.7e-07 60.5 240 28.8
Hma1.2p1_1578F.1_g291800 Hydrangea macrophylla HOM05D007554 ORTHO05D009569 3.6e-07 60.1 332 23.2
Nitab4.5_0004281g0070 Nicotiana tabacum HOM05D007554 ORTHO05D009569 3.6e-07 60.1 215 25.1
Ah.01g005910 Amaranthus hybridus HOM05D000566 ORTHO05D004798 6.1e-07 59.3 228 28.1
DCAR_007592 Daucus carota HOM05D000566 ORTHO05D004798 6.1e-07 59.3 236 25.8
Lalb_Chr04g0263011 Lupinus albus HOM05D000566 ORTHO05D004798 6.1e-07 59.3 251 26.7
Nitab4.5_0006709g0010 Nicotiana tabacum HOM05D007554 ORTHO05D009569 8.0e-07 58.9 229 22.3
MSTRG.11016 Avicennia marina HOM05D000566 ORTHO05D004798 1.0e-06 58.5 253 25.3
MD09G1199900 Malus domestica HOM05D000566 ORTHO05D004798 1.4e-06 58.2 260 26.2
Sc07g0004650 Simmondsia chinensis HOM05D007554 ORTHO05D009569 1.4e-06 58.2 292 24.7
MSTRG.22623 Avicennia marina HOM05D000566 ORTHO05D004798 2.3e-06 57.4 232 24.1
Lsat_1_v5_gn_1_36681 Lactuca sativa HOM05D000566 ORTHO05D004798 2.3e-06 57.4 243 25.5
Lalb_Chr01g0018501 Lupinus albus HOM05D007554 ORTHO05D009569 2.3e-06 57.4 226 20.8
arahy.Tifrunner.gnm1.ann1.YI8MDQ Arachis hypogaea HOM05D000566 ORTHO05D004798 4.0e-06 56.6 256 24.2
MBI04_g22191_MAGBIO Magnolia biondii HOM05D000566 ORTHO05D009569 4.0e-06 56.6 243 26.7
Gorai.009G138100 Gossypium raimondii HOM05D000566 ORTHO05D004798 5.2e-06 56.2 262 27.9
arahy.Tifrunner.gnm1.ann1.5H9RXZ Arachis hypogaea HOM05D007554 ORTHO05D009569 6.8e-06 55.8 277 21.7
arahy.Tifrunner.gnm1.ann1.NAN5QV Arachis hypogaea HOM05D007554 ORTHO05D009569 6.8e-06 55.8 277 21.7
EL10Ac7g16728 Beta vulgaris HOM05D007554 ORTHO05D009569 6.8e-06 55.8 247 22.3
TPR.G6520 Trifolium pratense HOM05D000566 ORTHO05D004798 6.8e-06 55.8 247 25.1
ATR0026G023 Amborella trichopoda HOM05D000566 ORTHO05D004798 8.8e-06 55.5 252 25.8


User provided reference genes

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