Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 1.4e-308 1062.8 836 100.0
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 8.0e-131 472.2 523 98.3
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 8.0e-131 472.2 523 98.3
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 1.7e-120 438.0 544 91.5
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 2.3e-114 417.5 586 85.0
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 6.0e-86 323.2 227 82.8
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 8.7e-85 319.3 554 80.3
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 3.1e-82 310.8 216 83.3
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 9.6e-76 289.3 220 78.6
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 6.5e-72 276.6 204 77.0
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 5.9e-65 253.4 223 66.8
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 8.2e-59 233.0 164 79.3
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 1.0e-56 226.1 198 66.7
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 1.3e-32 146.0 239 46.4
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 1.2e-30 139.4 125 70.4
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 6.3e-27 127.1 228 42.5
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 6.3e-27 127.1 206 44.2
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 4.1e-26 124.4 225 41.3
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 1.6e-25 122.5 232 40.5
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 2.9e-24 118.2 227 39.6
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 2.9e-24 118.2 246 39.4
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 2.9e-24 118.2 205 41.5
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.5e-23 115.9 221 41.2
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 3.3e-23 114.8 228 38.6
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 9.5e-23 113.2 250 39.6
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 2.1e-22 112.1 232 38.4
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 2.8e-22 111.7 250 36.8
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 4.7e-22 110.9 236 39.0
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 6.1e-22 110.5 240 39.6
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 1.8e-21 109.0 250 37.2
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.8e-21 109.0 251 37.5
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 2.3e-21 108.6 204 42.6
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 2.3e-21 108.6 235 38.7
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 2.0e-20 105.5 227 37.9
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 5.7e-20 104.0 239 36.4
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 5.7e-20 104.0 239 36.4
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 1.3e-19 102.8 249 34.1
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 1.3e-19 102.8 251 35.9
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.3e-19 102.8 239 37.2
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 2.2e-19 102.1 166 42.8
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 3.7e-19 101.3 248 33.5
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 3.7e-19 101.3 209 40.2
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 6.4e-19 100.5 259 35.1
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 1.8e-18 99.0 208 38.9
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 3.2e-18 98.2 213 37.6
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 4.1e-18 97.8 188 39.4
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 5.4e-18 97.4 253 32.8
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 7.0e-18 97.1 261 33.0
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 1.2e-17 96.3 231 35.5
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 2.0e-17 95.5 239 36.4
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 5.9e-17 94.0 229 35.4
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.0e-16 93.2 204 38.7
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.3e-16 92.8 237 35.0
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 1.7e-16 92.4 212 36.8
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 1.7e-16 92.4 231 35.1
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 2.3e-16 92.0 179 37.4
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 2.3e-16 92.0 255 34.9
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 2.3e-16 92.0 315 28.6
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 2.3e-16 92.0 281 32.0
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 5.0e-16 90.9 238 33.6
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 6.6e-16 90.5 193 37.8
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 3.3e-15 88.2 252 34.9
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 4.3e-15 87.8 227 36.1
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 7.3e-15 87.0 243 31.7
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 1.6e-14 85.9 252 32.9
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 1.6e-14 85.9 168 41.1
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 2.8e-14 85.1 256 34.0
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 1.0e-13 83.2 260 30.4
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.8e-13 82.4 168 41.1
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 4.0e-13 81.3 175 38.9
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 2.0e-12 79.0 174 39.7
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 2.6e-12 78.6 345 30.1
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 3.4e-12 78.2 255 30.6
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 7.5e-12 77.0 313 27.2
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 7.5e-12 77.0 243 32.5
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 9.8e-12 76.6 242 34.7
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 1.3e-11 76.3 239 33.5
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 1.3e-11 76.3 267 30.3
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.7e-11 75.9 257 27.6
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 4.9e-11 74.3 167 37.7
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 9.2e-10 70.1 106 46.2
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 2.0e-09 68.9 153 34.0
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 2.7e-09 68.6 185 35.1
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 3.5e-09 68.2 58 60.3
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 3.5e-09 68.2 58 60.3
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 6.0e-09 67.4 103 45.6
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 6.0e-09 67.4 228 29.8
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 1.3e-08 66.2 266 31.6
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 2.3e-08 65.5 249 28.5
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 8.6e-08 63.5 322 25.2
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 1.1e-07 63.2 197 32.0
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 4.3e-07 61.2 119 38.7
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 4.3e-07 61.2 61 55.7
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 4.3e-07 61.2 257 28.0
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 4.3e-07 61.2 257 27.6
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 5.6e-07 60.8 87 42.5
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 5.6e-07 60.8 69 50.7
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 5.6e-07 60.8 216 30.6
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 7.3e-07 60.5 237 30.8
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 1.2e-06 59.7 221 30.3
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 4.7e-06 57.8 127 33.9


User provided reference genes

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