Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-51 206.1 123 100.0
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 9.6e-49 196.8 123 94.3
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 2.8e-40 168.7 123 74.0
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 5.3e-39 164.5 106 94.3
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-35 152.5 100 94.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 5.3e-31 137.9 117 64.1
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 8.4e-29 130.6 117 59.8
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 2.5e-28 129.0 122 68.9
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 2.5e-28 129.0 117 59.8
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.6e-27 126.3 117 58.1
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 5.1e-26 121.3 117 58.1
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 6.7e-26 120.9 117 55.6
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 2.5e-25 119.0 117 56.4
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.3e-24 116.7 118 57.6
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.3e-24 116.7 118 57.6
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-24 116.3 117 65.0
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.2e-24 115.9 117 58.1
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.2e-24 115.9 119 58.0
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 2.2e-24 115.9 119 58.0
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 5.3e-23 111.3 118 57.6
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 3.2e-20 102.1 117 48.7
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 8.5e-13 77.4 74 60.8
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 4.2e-12 75.1 111 41.4
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 9.4e-12 73.9 75 52.0
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 9.4e-12 73.9 75 52.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 7.9e-11 70.9 125 36.8
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 7.9e-11 70.9 125 36.8
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.9e-10 68.6 65 50.8
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 5.1e-10 68.2 60 51.7
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 5.1e-10 68.2 117 35.0
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 6.7e-10 67.8 73 47.9
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 6.7e-10 67.8 119 35.3
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 6.7e-10 67.8 65 49.2
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 6.7e-10 67.8 75 44.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.1e-09 67.0 71 46.5
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-09 66.6 75 45.3
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-09 66.6 75 45.3
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 2.0e-09 66.2 70 45.7
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.0e-09 66.2 125 35.2
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 2.6e-09 65.9 119 37.0
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 2.6e-09 65.9 117 35.0
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.3e-09 65.5 71 47.9
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 3.3e-09 65.5 72 47.2
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 3.3e-09 65.5 72 47.2
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.7e-09 64.7 71 47.9
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 2.2e-08 62.8 74 44.6
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.7e-08 62.0 77 44.2
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 3.7e-08 62.0 60 51.7
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 3.7e-08 62.0 77 39.0
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 3.7e-08 62.0 74 41.9
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 3.7e-08 62.0 74 45.9
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 8.2e-08 60.8 75 44.0
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.1e-07 60.5 69 43.5
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.1e-07 60.5 69 43.5
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 1.4e-07 60.1 71 45.1
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.8e-07 59.7 69 43.5
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.8e-07 59.7 69 43.5
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.8e-07 59.7 69 43.5
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-07 59.7 52 55.8
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 2.4e-07 59.3 76 40.8
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 2.4e-07 59.3 54 53.7
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.1e-07 58.9 63 46.0
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 5.3e-07 58.2 74 39.2
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 9.1e-07 57.4 72 40.3
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 9.1e-07 57.4 70 42.9
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.2e-06 57.0 79 44.3
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.5e-06 56.6 72 40.3
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.5e-06 56.6 74 35.1
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.0e-06 56.2 57 47.4
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 2.0e-06 56.2 68 38.2
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 4.5e-06 55.1 61 47.5
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 4.5e-06 55.1 81 35.8
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 5.9e-06 54.7 47 53.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 7.7e-06 54.3 63 46.0


User provided reference genes

Program Settings