Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 5.9e-247 857.1 423 100.0
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-241 839.0 423 97.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-240 836.3 423 97.9
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-238 829.3 424 96.2
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.5e-237 825.1 425 95.8
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-228 794.7 423 92.9
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.2e-217 758.8 434 85.3
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 6.8e-211 737.3 439 82.9
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 3.1e-208 728.4 436 82.1
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.2e-207 726.5 441 81.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 2.9e-206 721.8 436 81.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 1.8e-203 712.6 434 80.9
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 1.2e-202 709.9 427 81.3
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.1e-200 703.4 424 80.4
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.1e-200 703.4 424 80.4
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 1.8e-200 702.6 428 81.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 7.0e-200 700.7 428 81.1
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.6e-199 699.5 428 81.3
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 7.3e-197 690.6 424 78.8
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 7.3e-197 690.6 424 78.5
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 1.6e-196 689.5 428 80.4
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-196 689.1 428 80.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.1e-196 689.1 428 80.1
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 6.2e-196 687.6 435 77.0
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 1.6e-183 646.4 432 75.2
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.1e-180 636.0 437 72.3
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 4.6e-175 618.2 432 70.8
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 2.1e-172 609.4 438 69.4
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 1.2e-170 603.6 431 68.9
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 3.5e-167 592.0 429 68.1
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 3.5e-167 592.0 429 68.1
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 3.0e-166 589.0 432 69.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.9e-166 588.6 429 67.6
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 8.7e-166 587.4 429 67.6
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 1.1e-165 587.0 432 68.5
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.1e-164 582.8 429 67.1
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 5.8e-162 574.7 418 68.9
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 2.6e-154 549.3 467 60.6
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 3.3e-149 532.3 468 59.4
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 2.8e-148 529.3 462 58.7
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.7e-148 528.9 467 58.5
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 3.7e-148 528.9 435 60.9
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 2.4e-147 526.2 441 59.2
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 4.0e-147 525.4 461 59.0
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 6.9e-147 524.6 468 59.6
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.5e-146 523.5 459 58.6
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.0e-146 523.1 459 58.6
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.3e-145 520.4 466 58.8
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.8e-145 518.8 459 58.4
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 1.1e-144 517.3 462 57.4
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 1.1e-144 517.3 467 56.3
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 7.1e-144 514.6 466 58.6
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 7.1e-144 514.6 458 58.1
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 1.6e-143 513.5 466 57.9
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.1e-143 513.1 468 55.3
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 2.7e-143 512.7 458 57.9
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 3.5e-143 512.3 463 56.8
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 3.5e-143 512.3 469 56.3
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 4.6e-143 511.9 467 55.5
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 4.6e-143 511.9 466 57.5
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 7.9e-143 511.1 467 55.0
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 7.9e-143 511.1 470 56.4
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 2.3e-142 509.6 465 57.8
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.0e-142 509.2 458 57.6
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 3.0e-142 509.2 473 54.5
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.9e-142 508.8 466 57.1
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 3.9e-142 508.8 467 55.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.1e-142 508.4 466 56.7
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 2.5e-141 506.1 466 56.0
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 3.3e-141 505.8 460 55.9
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 3.3e-141 505.8 465 57.0
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 4.3e-141 505.4 467 56.5
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 5.7e-141 505.0 473 54.5
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 2.2e-140 503.1 445 57.3
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.7e-140 502.3 462 56.3
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 6.3e-140 501.5 467 55.2
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 3.1e-139 499.2 470 55.1
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 4.1e-139 498.8 445 58.2
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 6.9e-139 498.0 467 55.5
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.2e-138 497.3 460 55.0
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 2.6e-138 496.1 472 54.7
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 7.6e-138 494.6 451 55.0
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 5.0e-137 491.9 447 55.7
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.4e-136 490.3 472 54.2
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.4e-136 490.3 465 56.3
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 2.5e-136 489.6 476 53.4
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.6e-135 486.9 467 54.4
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 3.6e-135 485.7 469 53.1
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 6.7e-134 481.5 451 54.3
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 8.8e-134 481.1 454 54.4
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 1.5e-133 480.3 451 55.2
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 1.9e-133 479.9 466 52.8
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 2.5e-133 479.6 471 52.9
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 9.7e-133 477.6 453 55.2
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 1.7e-132 476.9 450 52.4
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 2.2e-132 476.5 476 52.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.8e-132 476.1 445 55.7
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 6.3e-132 474.9 453 53.9
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 4.1e-131 472.2 461 53.6
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.1e-131 472.2 448 53.1
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 9.1e-131 471.1 467 52.9
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-130 469.9 432 61.3
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 2.6e-130 469.5 470 51.1
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.6e-130 469.5 457 53.8
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 3.4e-130 469.2 472 53.0
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 2.9e-129 466.1 431 57.8
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 2.9e-129 466.1 444 54.5
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.9e-128 463.4 473 52.0
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 2.7e-127 459.5 454 52.0
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 3.6e-127 459.1 462 50.9
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 3.6e-127 459.1 443 53.3
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.4e-126 457.2 466 53.0
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-125 454.1 464 50.9
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.5e-125 453.8 463 51.0
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 3.3e-125 452.6 462 51.7
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 3.3e-125 452.6 468 51.9
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 7.4e-125 451.4 437 51.9
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 7.4e-125 451.4 460 53.7
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.1e-123 447.6 460 51.5
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.8e-123 446.8 431 52.4
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 4.1e-123 445.7 467 49.7
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 4.1e-123 445.7 436 51.8
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 7.0e-123 444.9 447 49.7
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 7.0e-123 444.9 461 51.4
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 2.0e-122 443.4 439 52.4
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 1.3e-121 440.7 443 51.5
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 3.8e-121 439.1 434 49.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 5.0e-121 438.7 443 50.8
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.4e-120 437.2 434 52.1
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.9e-120 436.8 448 51.1
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.2e-120 436.0 455 49.5
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 2.1e-119 433.3 448 49.3
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.7e-119 433.0 439 50.8
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 6.1e-119 431.8 463 49.2
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.0e-118 431.0 465 48.4
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 6.7e-118 428.3 417 51.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 3.3e-117 426.0 402 53.7
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 3.7e-116 422.5 406 53.7
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 7.7e-114 414.8 468 48.1
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.5e-109 400.6 400 50.5
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 9.1e-107 391.3 424 48.3
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 5.9e-106 388.7 435 47.6
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 1.7e-105 387.1 380 52.1
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.0e-101 373.6 441 44.7
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 3.4e-101 372.9 455 46.6
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 4.1e-99 365.9 292 61.3
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 4.1e-99 365.9 292 61.3
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 5.4e-99 365.5 425 45.9
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 2.4e-91 340.1 430 42.8
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.4e-91 340.1 427 43.1
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.4e-91 339.0 430 43.0
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 9.2e-91 338.2 430 41.9
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.0e-89 334.7 476 39.7
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 3.6e-87 326.2 199 80.4
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 4.7e-87 325.9 199 80.4
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 5.0e-81 305.8 419 40.6
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 6.0e-66 255.8 164 78.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.3e-64 249.6 335 40.0
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 4.9e-60 236.1 338 44.4
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 4.6e-58 229.6 214 53.3
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 4.4e-53 213.0 272 51.5
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.2e-45 188.3 204 50.5
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.4e-45 186.8 210 49.0
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.3e-41 174.9 200 46.0
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 2.5e-32 144.1 119 66.4
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 5.8e-29 132.9 84 79.8
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 5.5e-27 126.3 86 76.7
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 5.5e-27 126.3 330 29.4
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 2.7e-26 124.0 137 46.0
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 6.7e-17 92.8 108 48.1
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 2.4e-14 84.3 60 80.0
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 8.5e-12 75.9 43 83.7
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 5.7e-08 63.2 137 33.6


User provided reference genes

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