Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g03589 Brassica carinata HOM05D004515 ORTHO05D006013 2.2e-67 258.8 133 100.0
BcaC01g05436 Brassica carinata HOM05D004515 ORTHO05D006013 2.2e-67 258.8 133 100.0
A03p22540 Brassica napus HOM05D004515 ORTHO05D006013 6.0e-65 250.8 133 96.2
C03p26690 Brassica napus HOM05D004515 ORTHO05D006013 6.0e-65 250.8 133 96.2
Sp4g22390 Schrenkiella parvula HOM05D004515 ORTHO05D006013 1.0e-64 250.0 133 94.7
Thhalv10016489m.g Eutrema salsugineum HOM05D004515 ORTHO05D006013 1.5e-63 246.1 133 92.5
A05p06380 Brassica napus HOM05D004515 ORTHO05D006013 1.3e-62 243.0 133 91.7
BcaB02g09054 Brassica carinata HOM05D004515 ORTHO05D006013 2.8e-62 241.9 133 91.0
CARHR135050 Cardamine hirsuta HOM05D004515 ORTHO05D006013 1.3e-59 233.0 133 88.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 2.2e-59 232.3 130 88.5
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 2.2e-59 232.3 130 88.5
AL4G37730 Arabidopsis lyrata HOM05D004515 ORTHO05D006013 6.5e-59 230.7 133 88.0
Carub.0004s2225 Capsella rubella HOM05D004515 ORTHO05D006013 6.5e-59 230.7 133 88.0
AT2G40090 Arabidopsis thaliana HOM05D004515 ORTHO05D006013 7.2e-58 227.3 133 85.7
BraA05t19606Z Brassica rapa HOM05D004515 ORTHO05D006013 5.1e-56 221.1 120 90.8
Aa31LG5G19520 Aethionema arabicum HOM05D004515 ORTHO05D006013 7.4e-55 217.2 133 82.7
THA.LOC104810499 Tarenaya hassleriana HOM05D004515 ORTHO05D006013 1.1e-53 213.4 133 78.9
Thecc.10G018200 Theobroma cacao HOM05D004515 ORTHO05D006013 2.1e-49 199.1 131 75.6
Duzib128G1522 Durio zibethinus HOM05D004515 ORTHO05D006013 7.9e-49 197.2 130 75.4
GSVIVG01032832001 Vitis vinifera HOM05D004515 ORTHO05D006013 7.9e-49 197.2 131 73.3
COL.COLO4_25711 Corchorus olitorius HOM05D004515 ORTHO05D006013 2.0e-47 192.6 132 72.0
Nitab4.5_0001171g0050 Nicotiana tabacum HOM05D004515 ORTHO05D006013 5.7e-47 191.0 133 71.4
Nn2g11487 Nelumbo nucifera HOM05D004515 ORTHO05D006013 9.7e-47 190.3 131 74.0
TWI09G1318 Tripterygium wilfordii HOM05D004515 ORTHO05D006013 9.7e-47 190.3 133 73.7
AUR62022874 Chenopodium quinoa HOM05D004515 ORTHO05D006013 1.7e-46 189.5 130 72.3
Gohir.D06G169400 Gossypium hirsutum HOM05D004515 ORTHO05D006013 1.7e-46 189.5 131 71.8
Hund13856 Selenicereus undatus HOM05D004515 ORTHO05D006013 2.2e-46 189.1 130 70.0
EL10Ac2g04822 Beta vulgaris HOM05D004515 ORTHO05D006013 4.8e-46 188.0 130 70.8
Hma1.2p1_0703F.1_g206460 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 4.8e-46 188.0 131 71.0
Gorai.010G198300 Gossypium raimondii HOM05D004515 ORTHO05D006013 1.1e-45 186.8 131 71.8
Cfa001324 Carpinus fangiana HOM05D004515 ORTHO05D006013 1.4e-45 186.4 130 70.0
Haze_17221 Corylus avellana HOM05D004515 ORTHO05D006013 1.4e-45 186.4 130 70.0
FvH4_7g24400 Fragaria vesca HOM05D004515 ORTHO05D006013 1.4e-45 186.4 132 69.7
Cpa.g.sc19.178 Carica papaya HOM05D004515 ORTHO05D006013 1.8e-45 186.0 130 70.8
MELO3C008295.2 Cucumis melo HOM05D004515 ORTHO05D006013 2.4e-45 185.7 130 68.5
Solyc06g051730.4 Solanum lycopersicum HOM05D004515 ORTHO05D006013 3.1e-45 185.3 133 68.4
Sopen06g017680 Solanum pennellii HOM05D004515 ORTHO05D006013 3.1e-45 185.3 133 68.4
Peaxi162Scf00825g00122 Petunia axillaris HOM05D004515 ORTHO05D006013 4.1e-45 184.9 133 67.7
Prupe.2G249400 Prunus persica HOM05D004515 ORTHO05D006013 5.3e-45 184.5 131 70.2
Sed0023990 Sechium edule HOM05D004515 ORTHO05D006013 7.0e-45 184.1 130 67.7
CiPaw.02G192100 Carya illinoinensis HOM05D004515 ORTHO05D006013 9.1e-45 183.7 131 71.0
Gohir.A06G163900 Gossypium hirsutum HOM05D004515 ORTHO05D006013 9.1e-45 183.7 131 71.0
FAN01G2906 Fragaria x ananassa HOM05D004515 ORTHO05D006013 1.5e-44 183.0 128 70.3
Nitab4.5_0003999g0010 Nicotiana tabacum HOM05D004515 ORTHO05D006013 2.0e-44 182.6 135 68.9
Phvul.001G242500 Phaseolus vulgaris HOM05D004515 ORTHO05D006013 2.0e-44 182.6 131 70.2
Atru.chr12.26 Acer truncatum HOM05D004515 ORTHO05D006013 2.6e-44 182.2 131 70.2
Glyma.11G229300 Glycine max HOM05D004515 ORTHO05D006013 2.6e-44 182.2 131 68.7
Glyma.18G028000 Glycine max HOM05D004515 ORTHO05D006013 2.6e-44 182.2 131 67.9
Eucgr.J00216 Eucalyptus grandis HOM05D004515 ORTHO05D006013 3.5e-44 181.8 130 70.0
PGR044G1178 Punica granatum HOM05D004515 ORTHO05D006013 3.5e-44 181.8 132 68.9
TAR633G2451 Trochodendron aralioides HOM05D004515 ORTHO05D006013 3.5e-44 181.8 130 70.0
Migut.F01384 Erythranthe guttata HOM05D004515 ORTHO05D006013 5.9e-44 181.0 133 67.7
Rhsim03G0143400 Rhododendron simsii HOM05D004515 ORTHO05D006013 5.9e-44 181.0 133 70.7
VMungo1383G2049 Vigna mungo HOM05D004515 ORTHO05D006013 5.9e-44 181.0 131 68.7
CsaV3_6G001820 Cucumis sativus L. HOM05D004515 ORTHO05D006013 7.7e-44 180.6 130 67.7
RcHm_v2.0_Chr1g0370101 Rosa chinensis HOM05D004515 ORTHO05D006013 7.7e-44 180.6 128 68.8
Sc11g0005040 Simmondsia chinensis HOM05D004515 ORTHO05D006013 7.7e-44 180.6 132 70.5
TPR.G16214 Trifolium pratense HOM05D004515 ORTHO05D006013 7.7e-44 180.6 130 67.7
COL.COLO4_25712 Corchorus olitorius HOM05D004515 ORTHO05D006013 1.0e-43 180.3 131 67.9
FAN06G4539 Fragaria x ananassa HOM05D004515 ORTHO05D006013 1.3e-43 179.9 132 68.9
Lj6g0019651 Lotus japonicus HOM05D004515 ORTHO05D006013 1.3e-43 179.9 131 68.7
Oeu005845.1 Olea europaea HOM05D004515 ORTHO05D006013 1.3e-43 179.9 132 68.9
Ah.16g103480 Amaranthus hybridus HOM05D004515 ORTHO05D006013 1.7e-43 179.5 130 67.7
MD07G1221400 Malus domestica HOM05D004515 ORTHO05D006013 1.7e-43 179.5 130 67.7
vmacro06973 Vaccinium macrocarpon HOM05D004515 ORTHO05D006013 2.2e-43 179.1 133 69.2
Cc02_g06590 Coffea canephora HOM05D004515 ORTHO05D006013 2.9e-43 178.7 133 69.9
Duzib114G1023 Durio zibethinus HOM05D004515 ORTHO05D006013 3.8e-43 178.3 131 71.0
Lj1C955G2 Lonicera japonica HOM05D004515 ORTHO05D006013 5.0e-43 177.9 131 69.5
SalBow6G5289 Salvia bowleyana HOM05D004515 ORTHO05D006013 5.0e-43 177.9 133 66.9
arahy.Tifrunner.gnm1.ann1.61SRII Arachis hypogaea HOM05D004515 ORTHO05D006013 6.5e-43 177.6 131 64.9
arahy.Tifrunner.gnm1.ann1.RFU602 Arachis hypogaea HOM05D004515 ORTHO05D006013 6.5e-43 177.6 131 64.9
Ciclev10031189m.g Citrus clementina HOM05D004515 ORTHO05D006013 8.5e-43 177.2 132 68.9
Manes.07G128900 Manihot esculenta HOM05D004515 ORTHO05D006013 8.5e-43 177.2 130 69.2
QL08p063123 Quercus lobata HOM05D004515 ORTHO05D006013 1.1e-42 176.8 130 68.5
Manes.10G013300 Manihot esculenta HOM05D004515 ORTHO05D006013 1.4e-42 176.4 131 67.2
MD01G1152400 Malus domestica HOM05D004515 ORTHO05D006013 1.9e-42 176.0 131 64.1
unitig_747.g21413 Utricularia gibba HOM05D004515 ORTHO05D006013 1.9e-42 176.0 133 69.9
FAN10G4299 Fragaria x ananassa HOM05D000946 ORTHO05D006013 2.5e-42 175.6 128 69.5
PSO339G0388 Papaver somniferum HOM05D004515 ORTHO05D006013 5.5e-42 174.5 131 67.2
SGA_v2.0_scaffold44G16693 Striga asiatica HOM05D004515 ORTHO05D006013 5.5e-42 174.5 133 63.9
Lalb_Chr08g0231721 Lupinus albus HOM05D004515 ORTHO05D006013 1.2e-41 173.3 131 64.1
PSO801G0853 Papaver somniferum HOM05D004515 ORTHO05D006013 1.2e-41 173.3 131 66.4
Oeu025167.1 Olea europaea HOM05D004515 ORTHO05D006013 4.7e-41 171.4 130 66.9
Aqoxy2G00906 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 1.0e-40 170.2 131 65.6
Eucgr.J00212 Eucalyptus grandis HOM05D004515 ORTHO05D006013 1.8e-40 169.5 130 67.7
Sabra08G0049800 Salix brachista HOM05D004515 ORTHO05D006013 3.9e-40 168.3 131 66.4
Potri.008G067900 Populus trichocarpa HOM05D004515 ORTHO05D006013 5.2e-40 167.9 131 66.4
HanXRQChr14g0459811 Helianthus annuus HOM05D004515 ORTHO05D006013 6.7e-40 167.5 132 65.2
Lsat_1_v5_gn_5_153581 Lactuca sativa HOM05D004515 ORTHO05D006013 1.5e-39 166.4 133 61.7
Medtr3g070410 Medicago truncatula HOM05D004515 ORTHO05D006013 5.7e-39 164.5 134 61.9
Psat5g126840 Pisum sativum HOM05D004515 ORTHO05D006013 7.4e-39 164.1 134 61.9
Hund13854 Selenicereus undatus HOM05D004515 ORTHO05D006013 1.8e-37 159.5 130 64.6
ATR0618G041 Amborella trichopoda HOM05D004515 ORTHO05D006013 2.4e-37 159.1 130 63.8
CDE02G2203 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 5.3e-37 157.9 130 63.8
HanXRQChr08g0222111 Helianthus annuus HOM05D004515 ORTHO05D006013 1.0e-35 153.7 133 60.2
Lsat_1_v5_gn_8_12281 Lactuca sativa HOM05D004515 ORTHO05D006013 1.0e-35 153.7 133 59.4
HPP92_012630 Vanilla planifolia HOM05D004515 ORTHO05D006013 1.0e-35 153.7 128 62.5
Actinidia29699 Actinidia chinensis HOM05D004515 ORTHO05D006013 3.2e-34 148.7 111 65.8
ECA233G1018 Erigeron canadensis HOM05D000093 ORTHO05D006013 5.5e-34 147.9 133 54.9
HPP92_028026 Vanilla planifolia HOM05D004515 ORTHO05D006013 8.0e-33 144.1 128 60.2
ECA238G3319 Erigeron canadensis HOM05D004515 ORTHO05D006013 3.1e-29 132.1 90 71.1
AUR62012243 Chenopodium quinoa HOM05D004515 ORTHO05D006013 4.2e-26 121.7 74 82.4
ClCG11G006170 Citrullus lanatus HOM05D004515 ORTHO05D006013 5.2e-24 114.8 72 75.0
DCAR_024830 Daucus carota HOM05D004515 ORTHO05D006013 5.7e-23 111.3 68 76.5
SMO266G0006 Selaginella moellendorffii HOM05D004515 ORTHO05D006013 7.5e-23 110.9 128 46.1
CSS0001103 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 4.8e-22 108.2 66 78.8
CSS0009607 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 4.8e-22 108.2 66 78.8
Pp3c22_5080 Physcomitrium patens HOM05D004515 ORTHO05D006013 1.8e-21 106.3 130 44.6
CBR_g58691 Chara braunii HOM05D004515 ORTHO05D006013 1.2e-20 103.6 129 43.4
CDE04G3525 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 6.3e-14 81.3 131 38.9
SEGI_31356 Sequoiadendron giganteum HOM05D004515 ORTHO05D006013 8.3e-14 80.9 65 66.2
Cre10.g428150 Chlamydomonas reinhardtii HOM05D004515 ORTHO05D006013 7.0e-13 77.8 117 37.6
Ca_15120_v3 Cicer arietinum L. HOM05D004515 ORTHO05D006013 1.0e-08 63.9 39 69.2
Haze_26396 Corylus avellana HOM05D000290 ORTHO05D006013 2.0e-07 59.7 85 35.3


User provided reference genes

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