Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05374 Brassica carinata HOM05D006307 ORTHO05D008123 1.0e-93 346.7 170 100.0
C03p27230 Brassica napus HOM05D006307 ORTHO05D008123 7.4e-84 313.9 157 98.7
BolC3t15105H Brassica oleracea HOM05D006307 ORTHO05D008123 7.4e-84 313.9 157 98.7
BraA03t11518Z Brassica rapa HOM05D006307 ORTHO05D008123 2.8e-54 215.7 157 70.7
BcaC01g05375 Brassica carinata HOM05D006307 ORTHO05D008123 3.6e-54 215.3 157 72.0
C03p27220 Brassica napus HOM05D006307 ORTHO05D008123 5.2e-53 211.5 157 70.7
BolC3t15104H Brassica oleracea HOM05D006307 ORTHO05D008123 5.2e-53 211.5 157 70.7
A03p22950 Brassica napus HOM05D006307 ORTHO05D008123 2.0e-52 209.5 157 68.8
BraA03t11519Z Brassica rapa HOM05D006307 ORTHO05D008123 9.2e-50 200.7 157 66.2
BcaB01g03513 Brassica carinata HOM05D006307 ORTHO05D008123 5.9e-49 198.0 157 65.6
A03p22960 Brassica napus HOM05D006307 ORTHO05D008123 1.0e-48 197.2 157 66.9
CARHR135930 Cardamine hirsuta HOM05D006307 ORTHO05D008123 9.5e-47 190.7 158 63.3
AL4G38760 Arabidopsis lyrata HOM05D006307 ORTHO05D008123 1.2e-46 190.3 158 62.7
AT2G40815 Arabidopsis thaliana HOM05D006307 ORTHO05D008123 1.6e-46 189.9 160 61.2
BolC3t15106H Brassica oleracea HOM05D006307 ORTHO05D008123 3.6e-46 188.7 161 63.4
C03p27240 Brassica napus HOM05D006307 ORTHO05D008123 1.4e-45 186.8 161 62.7
Carub.0004s2313 Capsella rubella HOM05D006307 ORTHO05D008123 3.1e-45 185.7 174 56.3
Thhalv10016922m.g Eutrema salsugineum HOM05D006307 ORTHO05D008123 3.1e-45 185.7 159 63.5
Sp4g23140 Schrenkiella parvula HOM05D006307 ORTHO05D008123 4.4e-44 181.8 159 61.6
Aa31LG3G1290 Aethionema arabicum HOM05D006307 ORTHO05D008123 1.1e-39 167.2 160 57.5
THA.LOC104824373 Tarenaya hassleriana HOM05D006307 ORTHO05D008123 4.0e-37 158.7 156 55.8
BcaB01g03514 Brassica carinata HOM05D006307 ORTHO05D008123 2.6e-36 156.0 160 53.1
Potri.019G065500 Populus trichocarpa HOM05D006307 ORTHO05D008123 6.0e-33 144.8 166 49.4
Thecc.10G187500 Theobroma cacao HOM05D006307 ORTHO05D008123 7.8e-33 144.4 168 48.2
Gorai.012G012900 Gossypium raimondii HOM05D006307 ORTHO05D008123 8.6e-32 141.0 168 47.6
Duzib114G0239 Durio zibethinus HOM05D006307 ORTHO05D008123 5.6e-31 138.3 171 44.4
Gohir.A05G404900 Gossypium hirsutum HOM05D006307 ORTHO05D008123 5.6e-31 138.3 168 47.0
COL.COLO4_19496 Corchorus olitorius HOM05D006307 ORTHO05D008123 2.8e-30 136.0 157 49.0
Ciclev10033529m.g Citrus clementina HOM05D006307 ORTHO05D008123 3.6e-30 135.6 166 44.6
Sabra19G0079000 Salix brachista HOM05D006307 ORTHO05D008123 6.2e-30 134.8 161 50.3
Gohir.D04G010800 Gossypium hirsutum HOM05D006307 ORTHO05D008123 1.4e-29 133.7 168 45.2
Ca_05544_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 2.3e-29 132.9 169 47.3
Manes.07G141400 Manihot esculenta HOM05D006307 ORTHO05D008123 6.8e-29 131.3 166 46.4
Atru.chr12.221 Acer truncatum HOM05D006307 ORTHO05D008123 8.9e-29 131.0 157 46.5
arahy.Tifrunner.gnm1.ann1.78S8ZN Arachis hypogaea HOM05D006307 ORTHO05D008123 1.5e-28 130.2 159 46.5
CDE04G1875 Ceratophyllum demersum HOM05D006307 ORTHO05D008123 1.5e-28 130.2 157 45.9
AUR62031669 Chenopodium quinoa HOM05D006307 ORTHO05D008123 1.5e-28 130.2 168 43.5
PGR142G3034 Punica granatum HOM05D006307 ORTHO05D008123 1.5e-28 130.2 158 46.2
AUR62032552 Chenopodium quinoa HOM05D006307 ORTHO05D008123 2.0e-28 129.8 168 43.5
Haze_17382 Corylus avellana HOM05D006307 ORTHO05D008123 2.0e-28 129.8 149 50.3
Glyma.02G220300 Glycine max HOM05D006307 ORTHO05D008123 2.0e-28 129.8 162 45.7
arahy.Tifrunner.gnm1.ann1.8Y6D9P Arachis hypogaea HOM05D006307 ORTHO05D008123 3.4e-28 129.0 159 45.9
Glyma.14G187500 Glycine max HOM05D006307 ORTHO05D008123 3.4e-28 129.0 167 44.3
Nn2g10220 Nelumbo nucifera HOM05D006307 ORTHO05D008123 3.4e-28 129.0 159 45.9
Rhsim09G0187400 Rhododendron simsii HOM05D006307 ORTHO05D008123 4.4e-28 128.6 171 43.9
Cfa001179 Carpinus fangiana HOM05D006307 ORTHO05D008123 5.8e-28 128.3 150 50.7
TWI09G1245 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 5.8e-28 128.3 156 48.7
TAR633G2235 Trochodendron aralioides HOM05D006307 ORTHO05D008123 5.8e-28 128.3 158 48.1
GSVIVG01032869001 Vitis vinifera HOM05D006307 ORTHO05D008123 5.8e-28 128.3 169 43.2
VMungo0647G2347 Vigna mungo HOM05D006307 ORTHO05D008123 9.9e-28 127.5 167 44.9
CiPaw.01G088900 Carya illinoinensis HOM05D006307 ORTHO05D008123 1.3e-27 127.1 157 47.1
Dinv21870 Davidia involucrata HOM05D006307 ORTHO05D008123 1.3e-27 127.1 158 47.5
Cpa.g.sc65.81 Carica papaya HOM05D006307 ORTHO05D008123 1.7e-27 126.7 167 46.7
Eucgr.J00096 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.7e-27 126.7 177 42.4
Phvul.008G187400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.2e-27 126.3 150 50.0
Prupe.2G267300 Prunus persica HOM05D006307 ORTHO05D008123 3.8e-27 125.6 160 43.8
QL08p065320 Quercus lobata HOM05D006307 ORTHO05D008123 3.8e-27 125.6 164 45.7
vmacro09945 Vaccinium macrocarpon HOM05D006307 ORTHO05D008123 4.9e-27 125.2 167 44.9
Nitab4.5_0000103g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 6.4e-27 124.8 150 48.0
Dinv34513 Davidia involucrata HOM05D006307 ORTHO05D008123 1.4e-26 123.6 158 45.6
FvH4_7g26311 Fragaria vesca HOM05D006307 ORTHO05D008123 1.4e-26 123.6 158 43.7
FAN01G0868 Fragaria x ananassa HOM05D006307 ORTHO05D008123 1.4e-26 123.6 158 43.7
MD01G1172000 Malus domestica HOM05D006307 ORTHO05D008123 1.4e-26 123.6 160 43.8
Nitab4.5_0001493g0020 Nicotiana tabacum HOM05D006307 ORTHO05D008123 1.4e-26 123.6 150 48.0
RcHm_v2.0_Chr1g0372771 Rosa chinensis HOM05D006307 ORTHO05D008123 1.9e-26 123.2 158 43.7
PGSC0003DMG400005260 Solanum tuberosum HOM05D006307 ORTHO05D008123 1.9e-26 123.2 160 47.5
Lalb_Chr10g0102911 Lupinus albus HOM05D006307 ORTHO05D008123 4.1e-26 122.1 166 42.8
CAN.G77.11 Capsicum annuum HOM05D006307 ORTHO05D008123 5.4e-26 121.7 168 47.0
HanXRQChr14g0441281 Helianthus annuus HOM05D006307 ORTHO05D008123 5.4e-26 121.7 158 47.5
Lsat_1_v5_gn_8_11140 Lactuca sativa HOM05D006307 ORTHO05D008123 5.4e-26 121.7 148 50.7
EL10Ac2g02693 Beta vulgaris HOM05D006307 ORTHO05D008123 7.1e-26 121.3 168 41.7
LjContig00155g0000391 Lotus japonicus HOM05D006307 ORTHO05D008123 7.1e-26 121.3 168 44.0
MSTRG.27248 Avicennia marina HOM05D006307 ORTHO05D008123 9.2e-26 120.9 151 48.3
CANSAT56G1764 Cannabis sativa HOM05D006307 ORTHO05D008123 9.2e-26 120.9 152 46.1
Sopen03g025310 Solanum pennellii HOM05D006307 ORTHO05D008123 1.6e-25 120.2 160 46.2
Actinidia01018 Actinidia chinensis HOM05D006307 ORTHO05D008123 2.1e-25 119.8 158 44.9
Ah.10g029650 Amaranthus hybridus HOM05D006307 ORTHO05D008123 3.5e-25 119.0 150 46.7
TPR.G27912 Trifolium pratense HOM05D006307 ORTHO05D008123 3.5e-25 119.0 159 45.3
Cc02_g05030 Coffea canephora HOM05D006307 ORTHO05D008123 4.6e-25 118.6 158 43.7
TWI73G0583 Tripterygium wilfordii HOM05D006307 ORTHO05D008123 4.6e-25 118.6 156 46.2
Psat2g060080 Pisum sativum HOM05D006307 ORTHO05D008123 7.8e-25 117.9 153 44.4
PGR044G1713 Punica granatum HOM05D006307 ORTHO05D008123 1.3e-24 117.1 171 44.4
MD07G1238500 Malus domestica HOM05D006307 ORTHO05D008123 2.3e-24 116.3 150 42.7
Medtr5g068530 Medicago truncatula HOM05D006307 ORTHO05D008123 2.3e-24 116.3 167 41.9
ECA233G0944 Erigeron canadensis HOM05D006307 ORTHO05D008123 5.1e-24 115.2 151 47.0
Medtr5g069320 Medicago truncatula HOM05D006307 ORTHO05D008123 6.6e-24 114.8 151 45.0
Cc02_g04860 Coffea canephora HOM05D006307 ORTHO05D008123 1.1e-23 114.0 158 43.7
HPP92_019043 Vanilla planifolia HOM05D006307 ORTHO05D008123 1.9e-23 113.2 153 45.1
arahy.Tifrunner.gnm1.ann1.RI9J7M Arachis hypogaea HOM05D006307 ORTHO05D008123 2.5e-23 112.8 157 43.3
Migut.F00561 Erythranthe guttata HOM05D006307 ORTHO05D008123 2.5e-23 112.8 157 43.3
PSO339G5993 Papaver somniferum HOM05D006307 ORTHO05D008123 3.3e-23 112.5 159 45.3
PSO384G0230 Papaver somniferum HOM05D006307 ORTHO05D008123 3.3e-23 112.5 158 43.7
Aqoxy4G03315 Aquilegia oxysepala HOM05D006307 ORTHO05D008123 4.3e-23 112.1 151 46.4
Ah.12g064690 Amaranthus hybridus HOM05D006307 ORTHO05D008123 7.3e-23 111.3 148 44.6
Glyma.06G140100 Glycine max HOM05D006307 ORTHO05D008123 7.3e-23 111.3 159 44.0
Lj1g0008062 Lotus japonicus HOM05D006307 ORTHO05D008123 7.3e-23 111.3 167 42.5
SalBow3G4635 Salvia bowleyana HOM05D006307 ORTHO05D008123 7.3e-23 111.3 148 45.9
Eucgr.G03171 Eucalyptus grandis HOM05D006307 ORTHO05D008123 1.2e-22 110.5 158 42.4
arahy.Tifrunner.gnm1.ann1.SS94V0 Arachis hypogaea HOM05D006307 ORTHO05D008123 1.6e-22 110.2 157 42.7
Phvul.009G041400 Phaseolus vulgaris HOM05D006307 ORTHO05D008123 2.1e-22 109.8 158 41.1
Os01g0818100 Oryza sativa ssp. japonica HOM05D006307 ORTHO05D008123 8.1e-22 107.8 158 41.1
Zm00001eb149710 Zea mays HOM05D006307 ORTHO05D008123 1.4e-21 107.1 159 42.1
Sc11g0006110 Simmondsia chinensis HOM05D006307 ORTHO05D008123 2.4e-21 106.3 160 41.9
Lalb_Chr08g0239321 Lupinus albus HOM05D006307 ORTHO05D008123 4.0e-21 105.5 158 41.1
Glyma.04G224600 Glycine max HOM05D006307 ORTHO05D008123 5.2e-21 105.1 166 41.0
CSS0034849 Camellia sinensis var. sinensis HOM05D006307 ORTHO05D008123 2.6e-20 102.8 151 41.7
VMungo1309G1947 Vigna mungo HOM05D006307 ORTHO05D008123 1.7e-19 100.1 158 39.9
ATR1127G014 Amborella trichopoda HOM05D006307 ORTHO05D008123 2.9e-19 99.4 164 43.3
Medtr3g093560 Medicago truncatula HOM05D006307 ORTHO05D008123 5.4e-18 95.1 151 39.1
Ca_16847_v3 Cicer arietinum L. HOM05D006307 ORTHO05D008123 6.0e-17 91.7 146 43.2
SGA_v2.0_scaffold60G20871 Striga asiatica HOM05D006307 ORTHO05D008123 6.0e-17 91.7 120 44.2
TPR.G13964 Trifolium pratense HOM05D006307 ORTHO05D008123 1.3e-16 90.5 150 40.0
Solyc03g095300.4 Solanum lycopersicum HOM05D006307 ORTHO05D008123 5.1e-16 88.6 123 45.5
Psat5g070080 Pisum sativum HOM05D006307 ORTHO05D008123 1.1e-15 87.4 164 37.8
SEGI_32602 Sequoiadendron giganteum HOM05D006307 ORTHO05D008123 7.6e-12 74.7 159 34.0
Actinidia07776 Actinidia chinensis HOM05D006307 ORTHO05D008123 1.1e-10 70.9 105 42.9
CAN.G70.11 Capsicum annuum HOM05D006307 ORTHO05D008123 5.4e-10 68.6 76 52.6
DCAR_018052 Daucus carota HOM05D006307 ORTHO05D009387 2.3e-08 63.2 91 44.0
Actinidia31756 Actinidia chinensis HOM05D006307 ORTHO05D008123 4.3e-07 58.9 69 42.0


User provided reference genes

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