Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 4.7e-133 478.0 269 100.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 8.1e-125 450.7 270 95.2
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-123 446.8 271 92.6
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-123 446.8 271 95.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.1e-104 382.9 272 83.5
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 2.0e-99 366.3 230 95.2
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 8.7e-87 324.3 283 74.6
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.8e-85 319.3 279 74.6
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.8e-85 319.3 279 74.6
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 7.6e-83 311.2 276 72.5
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 7.6e-83 311.2 276 72.5
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 7.6e-83 311.2 276 72.5
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 4.6e-80 302.0 276 69.9
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 2.3e-79 299.7 275 70.5
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 6.7e-79 298.1 290 70.3
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 3.6e-72 275.8 278 66.5
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 7.9e-72 274.6 279 67.4
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 2.3e-71 273.1 229 76.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 5.1e-71 271.9 281 66.5
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 8.5e-66 254.6 278 63.7
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 3.9e-63 245.7 279 62.4
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.6e-48 197.2 279 56.3
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 3.8e-42 176.0 288 50.7
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 1.0e-39 167.9 266 50.8
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.4e-38 162.9 313 41.2
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.7e-37 160.6 323 40.2
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.0e-26 124.8 285 38.6
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.9e-26 123.2 285 38.2
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.0e-26 122.5 286 38.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 6.6e-26 122.1 263 38.8
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.6e-24 116.3 330 36.1
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.1e-24 115.5 270 39.3
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.0e-24 115.2 347 33.7
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 8.9e-23 111.7 350 32.6
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 8.9e-23 111.7 282 36.9
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.6e-22 110.2 115 58.3
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 3.4e-22 109.8 349 32.4
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 4.4e-22 109.4 340 33.8
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 5.7e-22 109.0 336 35.4
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 5.7e-22 109.0 332 34.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.7e-22 109.0 143 51.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 7.5e-22 108.6 320 34.4
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.3e-21 107.8 367 32.4
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 2.2e-21 107.1 113 54.9
BcaB01g03437 Brassica carinata HOM05D003648 ORTHO05D004267 2.9e-21 106.7 122 61.5
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.9e-21 106.7 304 32.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.9e-21 106.7 186 43.5
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 3.7e-21 106.3 138 47.1
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 3.7e-21 106.3 327 36.1
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 4.9e-21 105.9 363 32.5
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 4.9e-21 105.9 341 33.7
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 4.9e-21 105.9 132 51.5
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 6.4e-21 105.5 82 69.5
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 8.3e-21 105.1 86 65.1
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 8.3e-21 105.1 125 53.6
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.4e-20 104.4 134 50.7
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.4e-20 104.4 141 48.9
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-20 104.4 115 54.8
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.4e-20 104.4 330 34.5
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.4e-20 104.4 327 33.3
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.4e-20 104.4 130 52.3
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 1.8e-20 104.0 283 36.0
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.8e-20 104.0 344 33.7
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.4e-20 103.6 367 31.3
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 3.2e-20 103.2 133 48.1
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 5.4e-20 102.4 140 50.0
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 5.4e-20 102.4 155 45.8
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 5.4e-20 102.4 119 52.9
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 7.0e-20 102.1 160 47.5
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 7.0e-20 102.1 137 48.9
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 7.0e-20 102.1 263 35.0
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 7.0e-20 102.1 129 51.9
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 9.2e-20 101.7 129 48.1
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 9.2e-20 101.7 101 57.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.2e-19 101.3 136 46.3
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-19 101.3 367 31.1
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 1.6e-19 100.9 148 45.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 1.6e-19 100.9 320 33.8
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.0e-19 100.5 294 34.4
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.0e-19 100.5 367 31.1
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 2.0e-19 100.5 121 52.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.0e-19 100.5 139 51.1
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 2.7e-19 100.1 135 48.1
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 2.7e-19 100.1 128 50.8
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.6e-19 99.4 252 35.7
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 4.6e-19 99.4 334 34.4
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 4.6e-19 99.4 153 44.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 4.6e-19 99.4 141 46.8
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 4.6e-19 99.4 136 50.0
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 4.6e-19 99.4 135 48.9
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.9e-19 99.0 134 48.5
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.9e-19 99.0 134 48.5
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 5.9e-19 99.0 212 35.8
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.3e-18 97.8 102 55.9
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.3e-18 97.8 146 45.2
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 1.7e-18 97.4 145 45.5
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.7e-18 97.4 145 45.5
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 1.7e-18 97.4 351 31.1
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.3e-18 97.1 112 51.8
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 3.0e-18 96.7 125 46.4
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 3.9e-18 96.3 368 30.7
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.9e-18 96.3 366 33.1
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 5.0e-18 95.9 105 51.4
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 5.0e-18 95.9 388 30.2
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 5.0e-18 95.9 108 50.9
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 6.6e-18 95.5 109 50.5
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 6.6e-18 95.5 148 43.2
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 8.6e-18 95.1 305 35.1
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 8.6e-18 95.1 106 53.8
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.6e-18 95.1 169 39.6
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.1e-17 94.7 164 42.1
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-17 94.7 112 50.9
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.1e-17 94.7 249 34.1
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 1.5e-17 94.4 166 42.8
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.9e-17 94.0 104 52.9
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 1.9e-17 94.0 284 30.6
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 3.3e-17 93.2 157 42.7
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 3.3e-17 93.2 303 32.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.3e-17 93.2 126 49.2
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 3.3e-17 93.2 117 47.9
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.3e-17 93.2 147 44.9
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 4.3e-17 92.8 58 72.4
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 4.3e-17 92.8 130 43.8
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 7.3e-17 92.0 169 39.1
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 9.5e-17 91.7 56 73.2
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 9.5e-17 91.7 71 64.8
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 9.5e-17 91.7 56 78.6
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 9.5e-17 91.7 56 78.6
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 1.2e-16 91.3 246 34.1
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 1.6e-16 90.9 172 38.4
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.6e-16 90.9 124 45.2
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 3.6e-16 89.7 121 46.3
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 3.6e-16 89.7 129 43.4
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.6e-16 89.7 59 69.5
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 4.7e-16 89.4 175 36.0
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 6.2e-16 89.0 49 77.6
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 8.0e-16 88.6 50 84.0
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.1e-15 88.2 125 44.8
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.1e-15 88.2 111 47.7
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.1e-15 88.2 59 67.8
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 1.8e-15 87.4 126 42.9
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.8e-15 87.4 112 49.1
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.3e-15 87.0 452 27.7
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.3e-15 87.0 125 45.6
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-14 84.3 49 77.6
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.5e-14 84.3 139 42.4
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.4e-14 82.8 49 75.5
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 7.5e-14 82.0 105 48.6
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.3e-13 81.3 54 66.7
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.7e-13 80.9 102 49.0
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.7e-13 80.9 87 49.4
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.7e-13 80.9 70 60.0
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.1e-12 78.2 70 57.1
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.4e-12 77.0 49 75.5
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 4.1e-12 76.3 40 82.5
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.4e-12 75.9 50 62.0
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 5.4e-12 75.9 60 61.7
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 9.2e-12 75.1 91 46.2
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.7e-10 70.9 43 69.8
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.1e-09 68.2 55 54.5
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.9e-09 67.4 269 31.6
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 3.3e-09 66.6 122 36.9
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.3e-09 66.2 48 58.3
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 2.1e-08 63.9 112 40.2
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 8.1e-08 62.0 41 65.9
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.1e-08 62.0 63 50.8
Gohir.A01G190633 Gossypium hirsutum HOM05D014635 ORTHO05D014310 5.2e-07 59.3 133 33.8
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.2e-06 58.2 62 45.2
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.5e-06 57.8 51 52.9


User provided reference genes

Program Settings