Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05310 Brassica carinata HOM05D005723 ORTHO05D005968 1.1e-156 556.6 276 100.0
BolC3t15179H Brassica oleracea HOM05D005723 ORTHO05D005968 1.3e-154 549.7 276 98.9
A03p23560 Brassica napus HOM05D005723 ORTHO05D005968 1.3e-149 533.1 279 95.7
BraA03t11573Z Brassica rapa HOM05D005723 ORTHO05D005968 8.2e-149 530.4 279 95.3
BcaB01g03439 Brassica carinata HOM05D005723 ORTHO05D005968 1.4e-148 529.6 278 95.0
AT2G42070 Arabidopsis thaliana HOM05D005723 ORTHO05D005968 5.9e-139 497.7 282 89.0
AL4G40430 Arabidopsis lyrata HOM05D005723 ORTHO05D005968 2.2e-138 495.7 285 88.1
Carub.0004s2440 Capsella rubella HOM05D005723 ORTHO05D005968 6.5e-138 494.2 285 87.7
CARHR137150 Cardamine hirsuta HOM05D005723 ORTHO05D005968 8.5e-138 493.8 285 87.7
A05p02710 Brassica napus HOM05D005723 ORTHO05D005968 3.6e-136 488.4 287 86.4
C03p28100 Brassica napus HOM05D005723 ORTHO05D005968 8.0e-136 487.3 265 94.0
BcaNung04410 Brassica carinata HOM05D005723 ORTHO05D005968 1.4e-135 486.5 295 85.1
Thhalv10017043m.g Eutrema salsugineum HOM05D005723 ORTHO05D005968 3.3e-134 481.9 287 85.7
Aa31LG1G24130 Aethionema arabicum HOM05D005723 ORTHO05D005968 3.7e-133 478.4 290 83.8
BraA05t19263Z Brassica rapa HOM05D005723 ORTHO05D005968 4.1e-132 474.9 278 86.7
BcaC02g12456 Brassica carinata HOM05D005723 ORTHO05D005968 1.7e-130 469.5 278 86.7
BolC4t21962H Brassica oleracea HOM05D005723 ORTHO05D005968 1.7e-130 469.5 278 86.7
C04p03240 Brassica napus HOM05D005723 ORTHO05D005968 1.5e-129 466.5 278 86.3
Sp4g24280 Schrenkiella parvula HOM05D005723 ORTHO05D005968 1.2e-128 463.4 290 82.4
THA.LOC104802583 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 8.0e-120 434.1 296 74.7
THA.LOC104824477 Tarenaya hassleriana HOM05D005723 ORTHO05D005968 3.3e-113 412.1 296 72.3
Gohir.A09G128200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.4e-108 396.7 277 73.3
Gohir.D09G124200 Gossypium hirsutum HOM05D005723 ORTHO05D005968 3.5e-107 392.1 277 72.6
Gorai.006G143000 Gossypium raimondii HOM05D005723 ORTHO05D005968 1.7e-106 389.8 278 72.7
CiPaw.09G030000 Carya illinoinensis HOM05D005723 ORTHO05D005968 4.7e-104 381.7 291 66.3
Cfa020161 Carpinus fangiana HOM05D005723 ORTHO05D005968 5.8e-102 374.8 293 66.2
Thecc.05G171800 Theobroma cacao HOM05D005723 ORTHO05D005968 7.5e-102 374.4 291 66.0
Manes.08G043200 Manihot esculenta HOM05D005723 ORTHO05D005968 9.8e-102 374.0 294 67.3
RcHm_v2.0_Chr3g0479531 Rosa chinensis HOM05D005723 ORTHO05D005968 8.3e-101 370.9 289 65.7
Hma1.2p1_0648F.1_g195110 Hydrangea macrophylla HOM05D005723 ORTHO05D005968 9.2e-100 367.5 297 65.0
FAN14G2504 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.2e-99 367.1 304 64.5
TWI53G1132 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.2e-99 367.1 299 64.2
Migut.K00036 Erythranthe guttata HOM05D005723 ORTHO05D005968 7.8e-99 364.4 296 63.9
Atru.chr8.1119 Acer truncatum HOM05D005723 ORTHO05D005968 1.0e-98 364.0 256 68.8
COL.COLO4_33978 Corchorus olitorius HOM05D005723 ORTHO05D005968 6.6e-98 361.3 202 81.7
FAN02G2166 Fragaria x ananassa HOM05D005723 ORTHO05D005968 8.6e-98 360.9 301 62.5
Potri.016G045300 Populus trichocarpa HOM05D005723 ORTHO05D005968 8.6e-98 360.9 248 70.2
Actinidia17274 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.1e-97 360.5 287 65.5
Sabra06G0148000 Salix brachista HOM05D005723 ORTHO05D005968 1.1e-97 360.5 303 62.4
QL07p023897 Quercus lobata HOM05D005723 ORTHO05D005968 1.9e-97 359.8 298 64.1
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 5.6e-97 358.2 258 70.5
Solyc03g062830.3 Solanum lycopersicum HOM05D005723 ORTHO05D005968 9.5e-97 357.5 284 62.3
Potri.006G192800 Populus trichocarpa HOM05D005723 ORTHO05D005968 4.7e-96 355.1 303 63.0
EL10Ac3g06909 Beta vulgaris HOM05D005723 ORTHO05D005968 6.2e-96 354.8 281 64.4
Sopen03g015150 Solanum pennellii HOM05D005723 ORTHO05D005968 1.1e-95 354.0 284 62.0
TPR.G18229 Trifolium pratense HOM05D005723 ORTHO05D005968 1.1e-95 354.0 204 79.9
MD12G1056700 Malus domestica HOM05D005723 ORTHO05D005968 2.3e-95 352.8 297 63.0
Prupe.7G077500 Prunus persica HOM05D005723 ORTHO05D005968 2.3e-95 352.8 302 62.3
Ah.04g152500 Amaranthus hybridus HOM05D005723 ORTHO05D005968 5.2e-95 351.7 294 61.9
Peaxi162Scf00258g00623 Petunia axillaris HOM05D005723 ORTHO05D005968 5.2e-95 351.7 293 61.4
Psat3g068400 Pisum sativum HOM05D005723 ORTHO05D005968 6.8e-95 351.3 249 70.7
Sc13g0002300 Simmondsia chinensis HOM05D005723 ORTHO05D005968 6.8e-95 351.3 290 64.1
GSVIVG01033492001 Vitis vinifera HOM05D005723 ORTHO05D005968 8.9e-95 350.9 205 78.0
Duzib093G0286 Durio zibethinus HOM05D005723 ORTHO05D005968 2.0e-94 349.7 283 66.1
TAR623G0918 Trochodendron aralioides HOM05D005723 ORTHO05D005968 2.0e-94 349.7 294 61.2
Lju124A25G33 Lonicera japonica HOM05D005723 ORTHO05D005968 2.2e-93 346.3 231 71.0
Ca_08526_v3 Cicer arietinum L. HOM05D005723 ORTHO05D005968 4.9e-93 345.1 276 65.6
HanXRQChr13g0390481 Helianthus annuus HOM05D005723 ORTHO05D005968 4.9e-93 345.1 277 62.8
SGA_v2.0_scaffold274G46488 Striga asiatica HOM05D005723 ORTHO05D005968 6.4e-93 344.7 293 61.4
Medtr7g093280 Medicago truncatula HOM05D005723 ORTHO05D005968 8.3e-93 344.4 244 69.7
CANSAT64G2568 Cannabis sativa HOM05D005723 ORTHO05D005968 4.1e-92 342.0 288 62.5
Glyma.19G148100 Glycine max HOM05D005723 ORTHO05D005968 5.4e-92 341.7 241 70.1
Lj1g0008741 Lotus japonicus HOM05D005723 ORTHO05D005968 7.1e-92 341.3 281 63.7
Lalb_Chr18g0047891 Lupinus albus HOM05D005723 ORTHO05D005968 7.1e-92 341.3 204 76.0
Sed0013306 Sechium edule HOM05D005723 ORTHO05D005968 1.2e-91 340.5 306 61.4
Phvul.001G142700 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 1.6e-91 340.1 275 62.9
FvH4_6g22180 Fragaria vesca HOM05D005723 ORTHO05D005968 3.5e-91 339.0 274 66.4
Glyma.09G111000 Glycine max HOM05D005723 ORTHO05D005968 3.5e-91 339.0 217 74.2
VMungo1383G0807 Vigna mungo HOM05D005723 ORTHO05D005968 4.6e-91 338.6 275 63.3
Phvul.007G260200 Phaseolus vulgaris HOM05D005723 ORTHO05D005968 3.9e-90 335.5 217 73.3
Nitab4.5_0000324g0030 Nicotiana tabacum HOM05D005723 ORTHO05D005968 5.1e-90 335.1 200 75.5
Aqoxy1G00026 Aquilegia oxysepala HOM05D005723 ORTHO05D005968 8.6e-90 334.3 204 73.0
Cc06_g15920 Coffea canephora HOM05D005723 ORTHO05D005968 8.6e-90 334.3 219 70.8
MELO3C009621.2 Cucumis melo HOM05D005723 ORTHO05D005968 8.6e-90 334.3 305 57.7
VMungo0720G2417 Vigna mungo HOM05D005723 ORTHO05D005968 3.3e-89 332.4 206 75.2
FAN05G3703 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.6e-88 330.1 284 62.0
Nn2g15696 Nelumbo nucifera HOM05D005723 ORTHO05D005968 1.1e-87 327.4 295 55.9
PGR142G4063 Punica granatum HOM05D005723 ORTHO05D005968 5.2e-87 325.1 266 63.5
Rhsim04G0096600 Rhododendron simsii HOM05D005723 ORTHO05D005968 4.1e-84 315.5 273 61.5
Ciclev10013558m.g Citrus clementina HOM05D005723 ORTHO05D005968 9.2e-84 314.3 229 65.9
arahy.Tifrunner.gnm1.ann1.USMU0G Arachis hypogaea HOM05D005723 ORTHO05D005968 1.2e-83 313.9 266 63.2
CDE05G2791 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 1.6e-83 313.5 196 73.5
CDE05G1067 Ceratophyllum demersum HOM05D005723 ORTHO05D005968 2.7e-83 312.8 196 72.4
MBI08_g23085_MAGBIO Magnolia biondii HOM05D005723 ORTHO05D005968 3.0e-82 309.3 202 70.3
MSTRG.6477 Avicennia marina HOM05D005723 ORTHO05D005968 3.9e-82 308.9 290 55.9
DCAR_019848 Daucus carota HOM05D005723 ORTHO05D005968 1.1e-81 307.4 297 56.9
Lsat_1_v5_gn_5_163580 Lactuca sativa HOM05D005723 ORTHO05D005968 1.1e-81 307.4 287 56.4
Glyma.03G145000 Glycine max HOM05D005723 ORTHO05D005968 1.9e-81 306.6 263 62.4
Cpa.g.sc85.50 Carica papaya HOM05D005723 ORTHO05D005968 2.5e-81 306.2 294 58.8
Dinv14303 Davidia involucrata HOM05D005723 ORTHO05D005968 9.6e-81 304.3 259 64.1
ClCG10G017570 Citrullus lanatus HOM05D005723 ORTHO05D005968 1.2e-80 303.9 240 63.8
Nitab4.5_0002488g0020 Nicotiana tabacum HOM05D005723 ORTHO05D005968 1.2e-80 303.9 277 58.5
Zm00001eb320790 Zea mays HOM05D005723 ORTHO05D005968 2.1e-80 303.1 195 69.2
MD14G1055000 Malus domestica HOM05D005723 ORTHO05D005968 2.8e-80 302.8 244 63.5
SalBow1G1145 Salvia bowleyana HOM05D005723 ORTHO05D005968 6.9e-79 298.1 194 71.6
Oeu024483.2 Olea europaea HOM05D005723 ORTHO05D005968 1.2e-78 297.4 249 61.0
Zm00001eb104410 Zea mays HOM05D005723 ORTHO05D005968 1.5e-78 297.0 195 68.7
ATR0807G138 Amborella trichopoda HOM05D005723 ORTHO05D005968 7.8e-75 284.6 219 64.4
HPP92_009024 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.3e-74 283.9 247 58.7
PSO384G0309 Papaver somniferum HOM05D005723 ORTHO05D005968 3.0e-74 282.7 285 52.3
PSO339G0271 Papaver somniferum HOM05D005723 ORTHO05D005968 8.7e-74 281.2 286 50.7
Pp3c12_9930 Physcomitrium patens HOM05D005723 ORTHO05D005968 1.9e-73 280.0 259 54.1
CsaV3_3G038770 Cucumis sativus L. HOM05D005723 ORTHO05D005968 3.1e-71 272.7 202 67.8
arahy.Tifrunner.gnm1.ann1.4E6ATU Arachis hypogaea HOM05D005723 ORTHO05D005968 5.8e-70 268.5 257 58.4
AUR62015361 Chenopodium quinoa HOM05D005723 ORTHO05D005968 1.3e-69 267.3 157 79.0
SMO358G0738 Selaginella moellendorffii HOM05D005723 ORTHO05D005968 1.8e-66 256.9 195 60.0
HanXRQChr01g0009761 Helianthus annuus HOM05D005723 ORTHO05D005968 6.7e-66 255.0 157 73.9
ECA248G2266 Erigeron canadensis HOM05D005723 ORTHO05D005968 1.9e-65 253.4 157 73.9
Oeu034265.1 Olea europaea HOM05D005723 ORTHO05D005968 4.3e-65 252.3 156 74.4
AUR62012024 Chenopodium quinoa HOM05D005723 ORTHO05D005968 5.6e-65 251.9 151 77.5
arahy.Tifrunner.gnm1.ann1.WEU379 Arachis hypogaea HOM05D005723 ORTHO05D005968 9.9e-62 241.1 326 46.3
Cre06.g285200 Chlamydomonas reinhardtii HOM05D005723 ORTHO05D005968 1.4e-60 237.3 196 55.1
TWI74G1261 Tripterygium wilfordii HOM05D005723 ORTHO05D005968 1.3e-56 224.2 264 50.8
unitig_748.g7589 Utricularia gibba HOM05D005723 ORTHO05D005968 6.9e-55 218.4 141 71.6
Haze_19996 Corylus avellana HOM05D005723 ORTHO05D005968 4.9e-53 212.2 124 79.8
SEGI_25574 Sequoiadendron giganteum HOM05D005723 ORTHO05D005968 4.9e-53 212.2 152 69.1
Actinidia38586 Actinidia chinensis HOM05D005723 ORTHO05D005968 1.4e-52 210.7 274 47.4
PRCOL_00004505 Prasinoderma coloniale HOM05D005723 ORTHO05D005968 1.9e-52 210.3 197 50.3
C05p20370 Brassica napus HOM05D005723 ORTHO05D005968 3.0e-50 203.0 115 90.4
BolC5t30732H Brassica oleracea HOM05D000589 ORTHO05D005968 3.0e-50 203.0 115 90.4
Sed0026560 Sechium edule HOM05D005723 ORTHO05D005968 6.7e-50 201.8 194 53.1
MSTRG.10844 Avicennia marina HOM05D005723 ORTHO05D005968 1.8e-47 193.7 124 74.2
Os09g0553300 Oryza sativa ssp. japonica HOM05D005723 ORTHO05D005968 3.2e-44 183.0 111 72.1
arahy.Tifrunner.gnm1.ann1.HLHI9C Arachis hypogaea HOM05D005723 ORTHO05D005968 2.7e-43 179.9 117 75.2
HPP92_009080 Vanilla planifolia HOM05D005723 ORTHO05D005968 1.8e-42 177.2 170 54.7
AagrBONN_evm.TU.Sc2ySwM_117.3227 Anthoceros agrestis HOM05D005723 ORTHO05D005968 3.9e-42 176.0 136 59.6
Mapoly0013s0082 Marchantia polymorpha HOM05D005723 ORTHO05D005968 2.2e-40 170.2 152 52.0
Pp3c3_14150 Physcomitrium patens HOM05D005723 ORTHO05D005968 7.4e-33 145.2 223 41.7
CBR_g29504 Chara braunii HOM05D005723 ORTHO05D005968 4.1e-31 139.4 159 44.0
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 3.5e-30 136.3 90 76.7
BolC3t15180H Brassica oleracea HOM05D005723 ORTHO05D005968 1.7e-29 134.0 78 85.9
Gohir.A13G075901 Gossypium hirsutum HOM05D005723 ORTHO05D005968 1.0e-26 124.8 78 76.9
BcaC05g26057 Brassica carinata HOM05D005723 ORTHO05D005968 4.5e-22 109.4 63 87.3
MCO15G614 Micromonas commoda HOM05D005723 ORTHO05D005968 1.8e-18 97.4 168 35.7
vmacro09121 Vaccinium macrocarpon HOM05D005723 ORTHO05D005968 1.2e-17 94.7 49 79.6
Haze_19995 Corylus avellana HOM05D005723 ORTHO05D005968 7.5e-17 92.0 93 55.9
FAN09G1257 Fragaria x ananassa HOM05D005723 ORTHO05D005968 1.4e-10 71.2 130 43.8
Peaxi162Scf00006g00314 Petunia axillaris HOM05D000829 ORTHO05D000690 2.2e-08 63.9 190 26.3
CAN.G85.14 Capsicum annuum HOM05D000829 ORTHO05D000690 2.8e-08 63.5 190 27.4
Solyc12g015700.3 Solanum lycopersicum HOM05D000829 ORTHO05D000690 3.7e-08 63.2 189 27.0
Sopen12g007620 Solanum pennellii HOM05D000829 ORTHO05D000690 3.7e-08 63.2 189 27.0
PGSC0003DMG400029796 Solanum tuberosum HOM05D000829 ORTHO05D000690 3.7e-08 63.2 189 27.0
A03p09800 Brassica napus HOM05D004174 ORTHO05D004624 3.1e-07 60.1 156 32.7
BraA03t10295Z Brassica rapa HOM05D004174 ORTHO05D004624 3.1e-07 60.1 156 32.7
BcaB01g04811 Brassica carinata HOM05D004174 ORTHO05D004624 5.4e-07 59.3 156 32.7
MSTRG.19607 Avicennia marina HOM05D004174 ORTHO05D004624 7.0e-07 58.9 139 33.1
BolC3t13612H Brassica oleracea HOM05D004174 ORTHO05D004624 7.0e-07 58.9 154 30.5
CAN.G1966.1 Capsicum annuum HOM05D004174 ORTHO05D004624 9.1e-07 58.5 136 31.6
Lalb_Chr08g0234871 Lupinus albus HOM05D004174 ORTHO05D004624 9.1e-07 58.5 186 27.4
Oeu058056.1 Olea europaea HOM05D004174 ORTHO05D004624 9.1e-07 58.5 141 33.3
Solyc06g075080.4 Solanum lycopersicum HOM05D004174 ORTHO05D004624 9.1e-07 58.5 137 31.4
Sopen06g031500 Solanum pennellii HOM05D004174 ORTHO05D004624 9.1e-07 58.5 137 31.4
PGSC0003DMG400024321 Solanum tuberosum HOM05D004174 ORTHO05D004624 9.1e-07 58.5 137 31.4
C03p11380 Brassica napus HOM05D004174 ORTHO05D004624 1.2e-06 58.2 157 31.2
Nitab4.5_0000106g0230 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.6e-06 57.8 137 29.9
Nitab4.5_0006698g0010 Nicotiana tabacum HOM05D004174 ORTHO05D004624 1.6e-06 57.8 137 30.7
Aqoxy7G02096 Aquilegia oxysepala HOM05D004174 ORTHO05D004624 2.0e-06 57.4 138 31.2
Peaxi162Scf02490g00007 Petunia axillaris HOM05D004174 ORTHO05D004624 2.0e-06 57.4 136 31.6
Sed0019119 Sechium edule HOM05D004174 ORTHO05D004624 2.0e-06 57.4 142 33.8
A02p06020 Brassica napus HOM05D004174 ORTHO05D004624 3.5e-06 56.6 138 33.3
BraA02t05553Z Brassica rapa HOM05D004174 ORTHO05D004624 3.5e-06 56.6 138 33.3
BcaB05g22875 Brassica carinata HOM05D004174 ORTHO05D004624 4.5e-06 56.2 139 32.4
BcaC03g13730 Brassica carinata HOM05D004174 ORTHO05D004624 4.5e-06 56.2 139 32.4
MD15G1175700 Malus domestica HOM05D004174 ORTHO05D004624 4.5e-06 56.2 140 30.0
AL6G31620 Arabidopsis lyrata HOM05D004174 ORTHO05D004624 5.9e-06 55.8 139 32.4
Cc06_g08790 Coffea canephora HOM05D004174 ORTHO05D004624 5.9e-06 55.8 141 31.9
Thhalv10013566m.g Eutrema salsugineum HOM05D004174 ORTHO05D004624 5.9e-06 55.8 139 31.7
Lj4A460T58 Lonicera japonica HOM05D004174 ORTHO05D004624 5.9e-06 55.8 97 34.0
CSS0035220 Camellia sinensis var. sinensis HOM05D004174 ORTHO05D004624 7.7e-06 55.5 140 32.1
Eucgr.C04181 Eucalyptus grandis HOM05D004174 ORTHO05D004624 7.7e-06 55.5 138 29.0
Prupe.7G239600 Prunus persica HOM05D004174 ORTHO05D004624 7.7e-06 55.5 138 31.9
PGR102G0881 Punica granatum HOM05D004174 ORTHO05D004624 7.7e-06 55.5 96 38.5


User provided reference genes

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