Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05309 Brassica carinata HOM05D008020 ORTHO05D010140 4.7e-55 217.6 109 100.0
BolC3t15181H Brassica oleracea HOM05D008020 ORTHO05D010140 1.1e-53 213.0 109 97.2
C03p28110 Brassica napus HOM05D008020 ORTHO05D010140 8.2e-52 206.8 109 92.7
Sp7g08310 Schrenkiella parvula HOM05D008020 ORTHO05D010140 5.7e-45 184.1 111 84.7
BcaB01g03440 Brassica carinata HOM05D008020 ORTHO05D010140 1.3e-44 183.0 109 84.4
Thhalv10009649m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 5.7e-37 157.5 111 72.1
Thhalv10028031m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 1.3e-36 156.4 111 73.0
AL8G19330 Arabidopsis lyrata HOM05D008020 ORTHO05D010140 1.5e-32 142.9 111 68.5
CARHR284890 Cardamine hirsuta HOM05D008020 ORTHO05D010140 4.2e-32 141.4 113 67.3
Carub.0008s0691 Capsella rubella HOM05D008020 ORTHO05D010140 4.0e-30 134.8 109 67.9
AT5G42290 Arabidopsis thaliana HOM05D008020 ORTHO05D010140 1.5e-29 132.9 113 63.7
Gohir.D01G093200 Gossypium hirsutum HOM05D008020 ORTHO05D010140 2.0e-21 105.9 97 59.8
Gohir.A01G106700 Gossypium hirsutum HOM05D008020 ORTHO05D010140 5.7e-21 104.4 97 57.7
Gorai.002G118600 Gossypium raimondii HOM05D008020 ORTHO05D010140 1.7e-20 102.8 97 57.7
Oeu056212.1 Olea europaea HOM05D008020 ORTHO05D010140 8.3e-20 100.5 111 54.1
Migut.C00948 Erythranthe guttata HOM05D008020 ORTHO05D010140 2.4e-19 99.0 95 55.8
Migut.C00952 Erythranthe guttata HOM05D008020 ORTHO05D010140 2.4e-19 99.0 95 55.8
Rhsim06G0008300 Rhododendron simsii HOM05D008020 ORTHO05D010140 3.1e-19 98.6 108 51.9
Cpa.g.sc26.209 Carica papaya HOM05D008020 ORTHO05D010140 5.4e-19 97.8 107 50.5
COL.COLO4_03997 Corchorus olitorius HOM05D008020 ORTHO05D010140 9.2e-19 97.1 112 52.7
COL.COLO4_00185 Corchorus olitorius HOM05D008020 ORTHO05D010140 1.6e-18 96.3 112 52.7
Actinidia29785 Actinidia chinensis HOM05D008020 ORTHO05D010140 4.5e-18 94.7 110 52.7
Thecc.08G057500 Theobroma cacao HOM05D008020 ORTHO05D010140 5.9e-18 94.4 109 52.3
Medtr3g115170 Medicago truncatula HOM05D008020 ORTHO05D010140 1.0e-17 93.6 109 53.2
Nn6g31749 Nelumbo nucifera HOM05D008020 ORTHO05D010140 1.3e-17 93.2 96 54.2
Haze_22756 Corylus avellana HOM05D008020 ORTHO05D010140 1.7e-17 92.8 109 52.3
Lsat_1_v5_gn_9_44980 Lactuca sativa HOM05D008020 ORTHO05D010140 1.7e-17 92.8 89 56.2
ECA232G3495 Erigeron canadensis HOM05D008020 ORTHO05D010140 2.3e-17 92.4 92 54.3
PSO210G7351 Papaver somniferum HOM05D008020 ORTHO05D010140 2.9e-17 92.0 109 49.5
Glyma.06G019000 Glycine max HOM05D008020 ORTHO05D010140 1.9e-16 89.4 105 47.6
HanXRQChr15g0492771 Helianthus annuus HOM05D008020 ORTHO05D010140 3.3e-16 88.6 121 46.3
Duzib041G0109 Durio zibethinus HOM05D008020 ORTHO05D010140 7.3e-16 87.4 110 50.0
Os03g0133100 Oryza sativa ssp. japonica HOM05D008020 ORTHO05D010140 9.5e-16 87.0 97 49.5
Glyma.04G018700 Glycine max HOM05D008020 ORTHO05D010140 1.2e-15 86.7 110 46.4
ClCG11G018630 Citrullus lanatus HOM05D008020 ORTHO05D010140 1.6e-15 86.3 113 49.6
Psat5g011800 Pisum sativum HOM05D008020 ORTHO05D010140 1.6e-15 86.3 109 49.5
FvH4_2g37570 Fragaria vesca HOM05D008020 ORTHO05D010140 2.1e-15 85.9 111 45.9
Lj1g0023017 Lotus japonicus HOM05D008020 ORTHO05D010140 2.1e-15 85.9 90 51.1
EL10Ac1g01981 Beta vulgaris HOM05D008020 ORTHO05D010140 2.8e-15 85.5 93 50.5
MELO3C017014.2 Cucumis melo HOM05D008020 ORTHO05D010140 2.8e-15 85.5 109 45.9
VMungo1309G2936 Vigna mungo HOM05D008020 ORTHO05D010140 2.8e-15 85.5 102 47.1
SalBow7G2452 Salvia bowleyana HOM05D008020 ORTHO05D010140 3.6e-15 85.1 85 55.3
TWI56G1414 Tripterygium wilfordii HOM05D008020 ORTHO05D010140 4.7e-15 84.7 109 50.5
Phvul.009G021900 Phaseolus vulgaris HOM05D008020 ORTHO05D010140 1.4e-14 83.2 103 45.6
Cfa014061 Carpinus fangiana HOM05D008020 ORTHO05D010140 1.8e-14 82.8 85 56.5
Manes.05G135100 Manihot esculenta HOM05D008020 ORTHO05D010140 1.8e-14 82.8 109 46.8
Sc26g0004630 Simmondsia chinensis HOM05D008020 ORTHO05D010140 1.8e-14 82.8 108 45.4
FAN15G1770 Fragaria x ananassa HOM05D008020 ORTHO05D010140 3.0e-14 82.0 111 45.0
TAR625G0930 Trochodendron aralioides HOM05D008020 ORTHO05D010140 3.0e-14 82.0 86 53.5
CDE05G0785 Ceratophyllum demersum HOM05D008020 ORTHO05D010140 5.2e-14 81.3 110 47.3
MD15G1003000 Malus domestica HOM05D008020 ORTHO05D010140 5.2e-14 81.3 88 48.9
Eucgr.F03547 Eucalyptus grandis HOM05D008020 ORTHO05D010140 8.9e-14 80.5 88 48.9
unitig_0.g2104 Utricularia gibba HOM05D008020 ORTHO05D010140 2.6e-13 79.0 110 48.2
arahy.Tifrunner.gnm1.ann1.IQ4KFY Arachis hypogaea HOM05D008020 ORTHO05D010140 3.4e-13 78.6 88 50.0
Zm00001eb402590 Zea mays HOM05D008020 ORTHO05D010140 3.4e-13 78.6 93 47.3
Aa31LG9G12400 Aethionema arabicum HOM05D008020 ORTHO05D010140 9.8e-13 77.0 109 50.5
ATR0106G002 Amborella trichopoda HOM05D008020 ORTHO05D010140 9.8e-13 77.0 109 45.9
Ah.00g000390 Amaranthus hybridus HOM05D008020 ORTHO05D010140 1.3e-12 76.6 119 45.4
Lalb_Chr11g0061691 Lupinus albus HOM05D008020 ORTHO05D010140 1.3e-12 76.6 110 48.2
Ca_15441_v3 Cicer arietinum L. HOM05D008020 ORTHO05D010140 1.7e-12 76.3 110 48.2
CsaV3_4G037160 Cucumis sativus L. HOM05D008020 ORTHO05D010140 8.3e-12 73.9 83 53.0
RcHm_v2.0_Chr6g0304161 Rosa chinensis HOM05D008020 ORTHO05D010140 1.4e-11 73.2 111 43.2
SEGI_30631 Sequoiadendron giganteum HOM05D008020 ORTHO05D010140 7.0e-11 70.9 91 50.5
CSS0004036 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 6.0e-10 67.8 93 45.2
Atru.chr13.153 Acer truncatum HOM05D008020 ORTHO05D010140 6.6e-09 64.3 92 44.6
AUR62036888 Chenopodium quinoa HOM05D008020 ORTHO05D010140 1.1e-08 63.5 85 45.9
AUR62043558 Chenopodium quinoa HOM05D008020 ORTHO05D010140 1.1e-08 63.5 85 45.9
CSS0008844 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 2.8e-07 58.9 90 41.1
Pp3c20_23510 Physcomitrium patens HOM05D008020 ORTHO05D010140 3.6e-07 58.5 90 44.4
AagrBONN_evm.TU.Sc2ySwM_368.1603 Anthoceros agrestis HOM05D008020 ORTHO05D010140 1.1e-06 57.0 90 43.3


User provided reference genes

Program Settings