Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 2.4e-59 231.9 112 100.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 3.9e-57 224.6 115 96.5
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.1e-56 223.0 115 95.7
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 4.3e-56 221.1 115 94.8
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 7.4e-56 220.3 115 94.8
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 7.4e-56 220.3 115 94.8
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 9.6e-56 219.9 113 97.3
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 9.6e-56 219.9 113 97.3
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 4.8e-55 217.6 113 96.5
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 4.8e-55 217.6 104 99.0
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 4.8e-55 217.6 104 99.0
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 8.2e-55 216.9 115 92.2
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 1.4e-54 216.1 115 93.0
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.8e-54 215.7 112 96.4
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 4.0e-54 214.5 115 92.2
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 4.0e-54 214.5 117 90.6
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 4.0e-54 214.5 117 90.6
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 4.0e-54 214.5 112 95.5
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 6.9e-54 213.8 115 91.3
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 3.4e-53 211.5 115 91.3
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 4.5e-53 211.1 113 91.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.8e-53 210.7 111 90.1
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 7.6e-53 210.3 113 91.2
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 7.6e-53 210.3 118 91.5
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 7.6e-53 210.3 113 91.2
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 7.6e-53 210.3 113 91.2
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.7e-52 209.1 115 90.4
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 1.7e-52 209.1 113 90.3
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.1e-50 202.2 114 85.1
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 6.0e-50 200.7 115 84.3
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 4.3e-48 194.5 106 84.9
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 9.7e-48 193.4 115 83.5
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 7.2e-43 177.2 95 82.1
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 7.2e-43 177.2 112 76.8
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 1.2e-42 176.4 92 83.7
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 2.1e-42 175.6 107 76.6
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 6.1e-42 174.1 103 77.7
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.9e-42 173.7 99 79.8
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.0e-41 173.3 103 77.7
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 1.8e-41 172.6 109 75.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.3e-41 172.2 99 78.8
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.3e-41 172.2 99 78.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 3.0e-41 171.8 99 78.8
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 3.9e-41 171.4 106 76.4
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.9e-41 171.4 99 78.8
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 5.1e-41 171.0 100 82.0
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 6.7e-41 170.6 112 72.3
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 1.1e-40 169.9 99 80.8
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 2.5e-40 168.7 105 73.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 4.3e-40 167.9 99 78.8
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 5.7e-40 167.5 113 69.9
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.4e-40 167.2 99 76.8
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 9.7e-40 166.8 99 78.8
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.7e-39 166.0 107 73.8
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 2.2e-39 165.6 97 77.3
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 2.2e-39 165.6 102 76.5
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.7e-39 164.9 121 70.2
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 3.7e-39 164.9 121 70.2
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 3.7e-39 164.9 107 71.0
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 6.3e-39 164.1 107 72.0
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 8.2e-39 163.7 103 76.7
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-38 163.3 83 84.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-38 163.3 85 83.5
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-38 163.3 83 84.3
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 1.1e-38 163.3 113 68.1
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.4e-38 162.9 101 73.3
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 1.4e-38 162.9 96 77.1
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 2.4e-38 162.2 97 77.3
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.4e-38 162.2 95 77.9
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 2.4e-38 162.2 115 67.8
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 2.4e-38 162.2 107 72.0
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 3.1e-38 161.8 101 72.3
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.1e-38 161.4 108 69.4
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 4.1e-38 161.4 109 69.7
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 4.1e-38 161.4 117 67.5
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 5.3e-38 161.0 107 70.1
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 5.3e-38 161.0 107 70.1
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 5.3e-38 161.0 116 68.1
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 6.9e-38 160.6 94 77.7
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 6.9e-38 160.6 108 70.4
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 9.1e-38 160.2 116 64.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 9.1e-38 160.2 107 69.2
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 9.1e-38 160.2 97 75.3
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 9.1e-38 160.2 97 74.2
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.2e-37 159.8 113 67.3
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.2e-37 159.8 115 67.8
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.2e-37 159.8 110 70.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.0e-37 159.1 113 66.4
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.6e-37 158.7 113 64.6
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.6e-37 158.7 96 77.1
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.6e-37 158.7 96 75.0
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.4e-37 158.3 110 67.3
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.4e-37 158.3 110 67.3
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 4.5e-37 157.9 119 67.2
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 7.7e-37 157.1 113 63.7
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.3e-36 156.4 102 74.5
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 2.2e-36 155.6 107 65.4
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.2e-36 155.6 107 69.2
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 2.2e-36 155.6 86 77.9
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 2.9e-36 155.2 109 68.8
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 3.8e-36 154.8 114 63.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 3.8e-36 154.8 110 64.5
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 5.0e-36 154.5 81 80.2
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 5.0e-36 154.5 84 78.6
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 6.5e-36 154.1 107 67.3
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 8.5e-36 153.7 110 67.3
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 1.1e-35 153.3 101 70.3
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.1e-35 153.3 93 75.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 1.1e-35 153.3 103 70.9
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 1.9e-35 152.5 109 67.0
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 3.2e-35 151.8 94 74.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 3.2e-35 151.8 96 74.0
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 4.2e-35 151.4 116 62.9
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 4.2e-35 151.4 112 61.6
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 7.2e-35 150.6 112 62.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 7.2e-35 150.6 102 71.6
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 9.4e-35 150.2 112 63.4
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.6e-34 149.4 105 66.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.6e-34 149.4 108 67.6
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 2.1e-34 149.1 109 64.2
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.6e-34 148.3 94 72.3
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 3.6e-34 148.3 105 66.7
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 6.1e-34 147.5 105 66.7
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 6.1e-34 147.5 81 79.0
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.0e-33 146.7 76 80.3
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 77 80.5
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 1.8e-33 146.0 107 63.6
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 105 65.7
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 105 65.7
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.3e-33 145.6 96 69.8
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 3.0e-33 145.2 96 69.8
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 3.0e-33 145.2 77 79.2
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 1.1e-32 143.3 113 61.1
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.4e-32 141.4 105 64.8
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 5.7e-32 141.0 108 62.0
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.7e-32 140.2 105 63.8
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.8e-30 136.0 84 70.2
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 9.1e-30 133.7 64 96.9
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.0e-29 132.5 117 56.4
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 2.6e-29 132.1 82 67.1
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 8.5e-28 127.1 82 73.2
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.1e-27 126.7 82 64.6
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 1.5e-24 116.3 78 66.7
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 9.1e-22 107.1 70 72.9
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 3.5e-21 105.1 69 68.1
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 1.0e-20 103.6 105 46.7
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 1.2e-18 96.7 83 51.8
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.6e-18 96.3 114 54.4
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.1e-18 95.9 78 61.5
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 3.6e-18 95.1 70 72.9
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 1.8e-17 92.8 53 77.4
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 4.0e-17 91.7 109 45.9
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 8.2e-15 84.0 73 50.7
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 2.2e-12 75.9 71 50.7
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 8.5e-12 73.9 64 53.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 2.0e-08 62.8 46 65.2
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 4.4e-08 61.6 61 52.5


User provided reference genes

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