Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 9.3e-80 300.1 142 100.0
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 1.2e-15 87.0 59 72.9
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 1.2e-15 87.0 59 72.9
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.2e-15 87.0 59 72.9
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 1.2e-15 87.0 59 72.9
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.2e-15 87.0 59 72.9
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 1.6e-15 86.7 59 72.9
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 2.8e-15 85.9 59 71.2
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 2.8e-15 85.9 59 71.2
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 2.8e-15 85.9 59 71.2
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 2.8e-15 85.9 59 71.2
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 2.8e-15 85.9 59 71.2
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 4.7e-15 85.1 62 67.7
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 4.7e-15 85.1 59 69.5
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 8.0e-15 84.3 59 69.5
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 8.0e-15 84.3 59 69.5
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.0e-15 84.3 63 65.1
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.0e-15 84.3 63 65.1
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 8.0e-15 84.3 63 65.1
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 8.0e-15 84.3 59 67.8
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 8.0e-15 84.3 59 67.8
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 8.0e-15 84.3 59 67.8
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 1.0e-14 84.0 59 69.5
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 1.0e-14 84.0 59 69.5
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 1.0e-14 84.0 59 69.5
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 1.0e-14 84.0 59 69.5
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.0e-14 84.0 59 69.5
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 1.0e-14 84.0 59 69.5
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.4e-14 83.6 59 67.8
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 1.4e-14 83.6 59 67.8
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 1.4e-14 83.6 59 67.8
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.4e-14 83.6 59 66.1
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 1.4e-14 83.6 59 67.8
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.4e-14 83.6 59 67.8
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 1.8e-14 83.2 59 66.1
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 1.8e-14 83.2 59 67.8
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 1.8e-14 83.2 59 66.1
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 2.3e-14 82.8 59 67.8
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 2.3e-14 82.8 59 66.1
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.3e-14 82.8 59 66.1
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 2.3e-14 82.8 59 66.1
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 2.3e-14 82.8 59 66.1
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 3.0e-14 82.4 59 67.8
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 3.0e-14 82.4 59 67.8
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 3.0e-14 82.4 59 67.8
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 3.0e-14 82.4 66 60.6
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 4.0e-14 82.0 59 66.1
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 4.0e-14 82.0 59 66.1
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 4.0e-14 82.0 59 67.8
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 4.0e-14 82.0 59 66.1
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 4.0e-14 82.0 103 45.6
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 4.0e-14 82.0 59 66.1
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 5.2e-14 81.6 59 66.1
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 5.2e-14 81.6 59 67.8
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 6.8e-14 81.3 59 66.1
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 6.8e-14 81.3 59 66.1
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 6.8e-14 81.3 59 66.1
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 6.8e-14 81.3 59 66.1
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 6.8e-14 81.3 59 66.1
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 6.8e-14 81.3 59 64.4
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 8.9e-14 80.9 59 66.1
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 8.9e-14 80.9 59 66.1
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 1.2e-13 80.5 59 66.1
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.2e-13 80.5 59 66.1
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.2e-13 80.5 59 66.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 1.2e-13 80.5 59 66.1
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 1.2e-13 80.5 59 64.4
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.5e-13 80.1 59 64.4
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 2.0e-13 79.7 59 64.4
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 2.6e-13 79.3 59 64.4
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 2.6e-13 79.3 59 64.4
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 2.6e-13 79.3 59 62.7
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 2.6e-13 79.3 59 62.7
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 2.6e-13 79.3 59 64.4
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 2.6e-13 79.3 59 64.4
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 3.4e-13 79.0 59 61.0
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 3.4e-13 79.0 59 66.1
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 3.4e-13 79.0 59 64.4
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.4e-13 79.0 63 61.9
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.4e-13 78.6 59 64.4
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 4.4e-13 78.6 59 64.4
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 4.4e-13 78.6 59 62.7
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 4.4e-13 78.6 59 62.7
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 4.4e-13 78.6 62 62.9
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 4.4e-13 78.6 103 45.6
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 4.4e-13 78.6 59 64.4
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 5.7e-13 78.2 68 54.4
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 5.7e-13 78.2 59 62.7
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 5.7e-13 78.2 59 62.7
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 5.7e-13 78.2 59 62.7
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 5.7e-13 78.2 59 64.4
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 5.7e-13 78.2 59 61.0
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 7.5e-13 77.8 59 61.0
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 7.5e-13 77.8 84 51.2
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 9.8e-13 77.4 59 64.4
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 9.8e-13 77.4 59 62.7
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 1.3e-12 77.0 59 61.0
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 1.7e-12 76.6 59 61.0
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 1.7e-12 76.6 59 61.0
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 2.2e-12 76.3 59 61.0
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 2.2e-12 76.3 59 61.0
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 3.7e-12 75.5 59 61.0
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 4.9e-12 75.1 63 55.6
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 4.9e-12 75.1 68 50.0
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 6.3e-12 74.7 68 50.0
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 1.4e-11 73.6 59 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.4e-11 72.8 94 45.7
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 2.4e-11 72.8 63 55.6
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.4e-11 72.8 103 42.7
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.7e-09 66.6 55 56.4
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 5.6e-08 61.6 55 50.9


User provided reference genes

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