Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05263 Brassica carinata HOM05D006222 ORTHO05D007677 1.6e-28 128.6 60 100.0
BcaC02g12413 Brassica carinata HOM05D006222 ORTHO05D007677 6.4e-14 80.1 45 86.7
C04p04200 Brassica napus HOM05D006222 ORTHO05D007677 2.4e-13 78.2 45 86.7
BolC4t22057H Brassica oleracea HOM05D006222 ORTHO05D007677 2.4e-13 78.2 45 86.7
A05p03600 Brassica napus HOM05D006222 ORTHO05D007677 5.4e-13 77.0 45 80.0
Sp4g25240 Schrenkiella parvula HOM05D006222 ORTHO05D007677 2.1e-12 75.1 45 82.2
BraA05t19346Z Brassica rapa HOM05D006222 ORTHO05D007677 6.0e-12 73.6 45 77.8
CARHR138180 Cardamine hirsuta HOM05D006222 ORTHO05D007677 2.5e-10 68.2 45 73.3
Thhalv10017033m.g Eutrema salsugineum HOM05D006222 ORTHO05D007677 3.3e-10 67.8 45 75.6
Carub.0004s2559 Capsella rubella HOM05D006222 ORTHO05D007677 5.6e-10 67.0 42 78.6
Aa31LG1G24920 Aethionema arabicum HOM05D006222 ORTHO05D007677 9.5e-10 66.2 45 68.9
AT2G43110 Arabidopsis thaliana HOM05D006222 ORTHO05D007677 9.5e-10 66.2 42 78.6
AL401U10010 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 4.7e-09 63.9 42 76.2
AL4G41770 Arabidopsis lyrata HOM05D006222 ORTHO05D007677 4.7e-09 63.9 42 76.2
BcaNung03540 Brassica carinata HOM05D006222 ORTHO05D007677 4.7e-09 63.9 42 81.0
Sc07g0007090 Simmondsia chinensis HOM05D006222 ORTHO05D007677 6.2e-09 63.5 43 67.4
EL10Ac5g11641 Beta vulgaris HOM05D006222 ORTHO05D007677 1.1e-08 62.8 43 67.4
AUR62029129 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.1e-08 62.8 49 61.2
Nn3g20171 Nelumbo nucifera HOM05D006222 ORTHO05D007677 1.1e-08 62.8 43 69.8
AUR62014992 Chenopodium quinoa HOM05D006222 ORTHO05D007677 1.4e-08 62.4 43 65.1
Haze_11066 Corylus avellana HOM05D006222 ORTHO05D007677 1.4e-08 62.4 46 58.7
THA.LOC104804896 Tarenaya hassleriana HOM05D006222 ORTHO05D007677 1.4e-08 62.4 43 67.4
GSVIVG01031673001 Vitis vinifera HOM05D006222 ORTHO05D007677 1.4e-08 62.4 43 65.1
CSS0005997 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 8.9e-08 59.7 43 67.4
Manes.11G113101 Manihot esculenta HOM05D006222 ORTHO05D007677 8.9e-08 59.7 43 60.5
Hund13303 Selenicereus undatus HOM05D006222 ORTHO05D007677 8.9e-08 59.7 43 67.4
CSS0002349 Camellia sinensis var. sinensis HOM05D006222 ORTHO05D007677 1.2e-07 59.3 43 67.4
Oeu034479.1 Olea europaea HOM05D006222 ORTHO05D007677 1.2e-07 59.3 45 66.7
Rhsim09G0036800 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.2e-07 59.3 43 65.1
vmacro22720 Vaccinium macrocarpon HOM05D006222 ORTHO05D007677 1.2e-07 59.3 43 65.1
VMungo0720G0284 Vigna mungo HOM05D006222 ORTHO05D007677 1.2e-07 59.3 43 62.8
Ciclev10021532m.g Citrus clementina HOM05D006222 ORTHO05D007677 1.5e-07 58.9 43 62.8
Sabra14G0113700 Salix brachista HOM05D006222 ORTHO05D007677 1.5e-07 58.9 43 62.8
Hma1.2p1_1477F.1_g285900 Hydrangea macrophylla HOM05D006222 ORTHO05D007677 2.0e-07 58.5 43 62.8
Duzib268G0844 Durio zibethinus HOM05D006222 ORTHO05D007677 2.6e-07 58.2 44 59.1
Potri.014G150100 Populus trichocarpa HOM05D006222 ORTHO05D007677 2.6e-07 58.2 43 60.5
ClCG07G016700 Citrullus lanatus HOM05D006222 ORTHO05D007677 3.4e-07 57.8 43 58.1
CsaV3_4G003830 Cucumis sativus L. HOM05D006222 ORTHO05D007677 3.4e-07 57.8 43 58.1
Duzib268G0300 Durio zibethinus HOM05D006222 ORTHO05D007677 4.4e-07 57.4 43 60.5
PSO357G0657 Papaver somniferum HOM05D006222 ORTHO05D007677 4.4e-07 57.4 45 60.0
Cfa008558 Carpinus fangiana HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 58.1
FvH4_4g11840 Fragaria vesca HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 60.5
FAN12G2296 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 60.5
FAN12G2611 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 60.5
FAN17G0755 Fragaria x ananassa HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 60.5
QL10p043789 Quercus lobata HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 60.5
QL10p047309 Quercus lobata HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 60.5
TAR362G1090 Trochodendron aralioides HOM05D006222 ORTHO05D007677 5.8e-07 57.0 43 62.8
CANSAT78G1479 Cannabis sativa HOM05D006222 ORTHO05D007677 7.6e-07 56.6 43 60.5
Gohir.A10G136100 Gossypium hirsutum HOM05D006222 ORTHO05D007677 7.6e-07 56.6 43 60.5
Lalb_Chr06g0164621 Lupinus albus HOM05D006222 ORTHO05D007677 7.6e-07 56.6 43 55.8
Ah.12g062130 Amaranthus hybridus HOM05D006222 ORTHO05D007677 9.9e-07 56.2 43 60.5
Aqoxy5G00038 Aquilegia oxysepala HOM05D006222 ORTHO05D007677 9.9e-07 56.2 43 62.8
Dinv22662 Davidia involucrata HOM05D006222 ORTHO05D007677 9.9e-07 56.2 43 62.8
COL.COLO4_07298 Corchorus olitorius HOM05D006222 ORTHO05D007677 1.3e-06 55.8 43 60.5
MELO3C017672.2 Cucumis melo HOM05D006222 ORTHO05D007677 1.3e-06 55.8 42 57.1
DCAR_027540 Daucus carota HOM05D006222 ORTHO05D007677 1.3e-06 55.8 43 60.5
Phvul.007G002100 Phaseolus vulgaris HOM05D006222 ORTHO05D007677 1.3e-06 55.8 43 58.1
RhsimUnG0147000 Rhododendron simsii HOM05D006222 ORTHO05D007677 1.3e-06 55.8 41 63.4
Prupe.1G180600 Prunus persica HOM05D006222 ORTHO05D007677 1.7e-06 55.5 43 55.8
TWI63G0082 Tripterygium wilfordii HOM05D006222 ORTHO05D007677 1.7e-06 55.5 43 58.1
Duzib212G0460 Durio zibethinus HOM05D006222 ORTHO05D007677 2.2e-06 55.1 43 58.1
Medtr1g116820 Medicago truncatula HOM05D006222 ORTHO05D007677 2.2e-06 55.1 43 55.8
PSO170G0570 Papaver somniferum HOM05D006222 ORTHO05D007677 2.2e-06 55.1 45 60.0
SGA_v2.0_scaffold31G12583 Striga asiatica HOM05D006222 ORTHO05D007677 2.2e-06 55.1 43 65.1
FvH4_6g25320 Fragaria vesca HOM05D006222 ORTHO05D007677 2.9e-06 54.7 42 59.5
FAN05G2938 Fragaria x ananassa HOM05D006222 ORTHO05D007677 2.9e-06 54.7 44 54.5
MD13G1276400 Malus domestica HOM05D006222 ORTHO05D007677 2.9e-06 54.7 43 51.2
RcHm_v2.0_Chr4g0409281 Rosa chinensis HOM05D006222 ORTHO05D007677 2.9e-06 54.7 43 58.1
SalBow3G0382 Salvia bowleyana HOM05D006222 ORTHO05D007677 2.9e-06 54.7 45 60.0
Rhsim04G0094000 Rhododendron simsii HOM05D006222 ORTHO05D007677 3.7e-06 54.3 63 50.8
Gohir.D10G130500 Gossypium hirsutum HOM05D006222 ORTHO05D007677 4.9e-06 53.9 43 58.1
Gorai.011G144300 Gossypium raimondii HOM05D006222 ORTHO05D007677 4.9e-06 53.9 43 58.1
Thecc.04G181000 Theobroma cacao HOM05D006222 ORTHO05D007677 4.9e-06 53.9 43 58.1
unitig_578.g15951 Utricularia gibba HOM05D006222 ORTHO05D007677 4.9e-06 53.9 35 62.9
Zm00001eb086320 Zea mays HOM05D006222 ORTHO05D007677 4.9e-06 53.9 43 60.5
Actinidia32943 Actinidia chinensis HOM05D006222 ORTHO05D007677 6.4e-06 53.5 36 66.7
CiPaw.02G058300 Carya illinoinensis HOM05D006222 ORTHO05D007677 6.4e-06 53.5 43 60.5
Sed0019288 Sechium edule HOM05D006222 ORTHO05D007677 6.4e-06 53.5 43 55.8
Glyma.20G248400 Glycine max HOM05D006222 ORTHO05D007677 8.4e-06 53.1 43 55.8
Nitab4.5_0000161g0130 Nicotiana tabacum HOM05D006222 ORTHO05D007677 8.4e-06 53.1 45 57.8
Os04g0348100 Oryza sativa ssp. japonica HOM05D006222 ORTHO05D007677 8.4e-06 53.1 43 62.8


User provided reference genes

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