Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 3.7e-35 151.0 75 100.0
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-25 117.9 69 87.0
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 3.5e-25 117.9 69 87.0
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 3.5e-25 117.9 69 87.0
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 7.7e-25 116.7 69 87.0
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 1.7e-24 115.5 69 87.0
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 7.0e-18 93.6 71 69.0
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 7.7e-17 90.1 71 67.6
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.0e-16 89.7 71 67.6
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 1.0e-16 89.7 50 86.0
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.7e-16 89.0 71 67.6
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 1.9e-15 85.5 71 66.2
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-15 84.0 72 66.7
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 5.5e-15 84.0 71 60.6
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-14 81.3 71 62.0
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 3.6e-14 81.3 69 58.0
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 3.6e-14 81.3 69 58.0
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 4.7e-14 80.9 71 60.6
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 4.7e-14 80.9 72 65.3
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 4.7e-14 80.9 69 59.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.0e-13 79.7 71 60.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 1.4e-13 79.3 72 62.5
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 1.8e-13 79.0 71 59.2
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 1.8e-13 79.0 71 59.2
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 1.8e-13 79.0 71 59.2
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 1.8e-13 79.0 71 59.2
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 2.3e-13 78.6 69 59.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 3.0e-13 78.2 69 56.5
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 6.8e-13 77.0 71 64.8
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.2e-12 76.3 69 56.5
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.2e-12 76.3 71 56.3
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.4e-12 74.7 72 55.6
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 3.4e-12 74.7 69 56.5
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 4.4e-12 74.3 71 56.3
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 5.7e-12 73.9 69 55.1
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 5.7e-12 73.9 69 56.5
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.3e-11 72.8 68 57.4
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 1.7e-11 72.4 72 54.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 1.7e-11 72.4 72 54.2
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.7e-11 72.4 69 56.5
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 2.2e-11 72.0 68 60.3
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 3.7e-11 71.2 72 54.2
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 3.7e-11 71.2 70 54.3
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 6.3e-11 70.5 69 55.1
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.4e-10 69.3 71 52.1
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.8e-10 68.9 69 56.5
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 1.8e-10 68.9 67 56.7
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 2.4e-10 68.6 71 52.1
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.4e-10 68.6 69 52.2
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.1e-10 68.2 69 52.2
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 3.1e-10 68.2 68 52.9
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.1e-10 68.2 69 53.6
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 3.1e-10 68.2 69 53.6
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 3.1e-10 68.2 72 55.6
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.1e-10 67.8 72 50.0
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 4.1e-10 67.8 69 53.6
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 4.1e-10 67.8 68 55.9
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 5.3e-10 67.4 69 52.2
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 5.3e-10 67.4 71 54.9
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 5.3e-10 67.4 71 52.1
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 7.0e-10 67.0 69 52.2
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 7.0e-10 67.0 68 57.4
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 7.0e-10 67.0 69 52.2
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 7.0e-10 67.0 69 53.6
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 9.1e-10 66.6 68 52.9
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 9.1e-10 66.6 69 52.2
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 9.1e-10 66.6 69 50.7
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 9.1e-10 66.6 69 50.7
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 9.1e-10 66.6 72 48.6
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.6e-09 65.9 69 50.7
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 1.6e-09 65.9 68 51.5
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-09 65.5 68 51.5
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.0e-09 65.5 69 52.2
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 2.0e-09 65.5 69 55.1
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 2.0e-09 65.5 71 47.9
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 2.7e-09 65.1 69 52.2
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 2.7e-09 65.1 69 50.7
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 4.5e-09 64.3 53 62.3
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 5.9e-09 63.9 69 50.7
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 5.9e-09 63.9 69 50.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-09 63.9 68 50.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-09 63.9 68 51.5
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-09 63.9 68 51.5
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 5.9e-09 63.9 68 51.5
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 5.9e-09 63.9 69 52.2
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 7.7e-09 63.5 68 54.4
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 7.7e-09 63.5 68 51.5
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 7.7e-09 63.5 70 51.4
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 1.3e-08 62.8 68 54.4
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.3e-08 62.8 69 50.7
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-08 62.8 68 48.5
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 1.3e-08 62.8 68 54.4
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.7e-08 62.4 68 48.5
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.7e-08 62.4 68 48.5
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 1.7e-08 62.4 69 52.2
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 2.9e-08 61.6 69 50.7
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 2.9e-08 61.6 68 50.0
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.9e-08 61.6 71 45.1
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.8e-08 61.2 68 54.4
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 3.8e-08 61.2 68 54.4
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.5e-08 60.5 72 44.4
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 6.5e-08 60.5 68 51.5
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 8.5e-08 60.1 68 52.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.1e-07 59.7 69 52.2
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 1.5e-07 59.3 69 42.0
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 1.9e-07 58.9 68 47.1
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 2.5e-07 58.5 69 50.7
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.5e-07 58.5 72 44.4
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.2e-07 58.2 47 63.8
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.2e-07 57.8 68 47.1
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 4.2e-07 57.8 68 48.5
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 5.5e-07 57.4 68 50.0
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 5.5e-07 57.4 59 50.8
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 5.5e-07 57.4 69 44.9
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.1e-06 55.5 69 44.9
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 2.7e-06 55.1 68 44.1
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 4.7e-06 54.3 68 47.1
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 4.7e-06 54.3 68 47.1
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 8.0e-06 53.5 68 45.6


User provided reference genes

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