Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-40 169.1 88 100.0
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-22 108.2 87 74.7
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 8.7e-20 100.1 84 70.2
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 8.7e-20 100.1 84 70.2
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 8.7e-20 100.1 84 70.2
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 6.1e-13 77.4 86 52.3
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 1.0e-12 76.6 86 52.3
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 1.0e-12 76.6 86 51.2
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.4e-12 76.3 86 51.2
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 1.4e-12 76.3 86 51.2
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 3.9e-12 74.7 86 50.0
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 3.9e-12 74.7 86 50.0
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 3.9e-12 74.7 86 50.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 3.9e-12 74.7 86 50.0
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 3.9e-12 74.7 86 50.0
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 5.1e-12 74.3 88 54.5
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 5.1e-12 74.3 88 54.5
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 6.7e-12 73.9 89 53.9
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 8.8e-12 73.6 88 53.4
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.1e-11 73.2 68 63.2
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 3.3e-11 71.6 86 48.8
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.3e-11 71.6 86 48.8
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 4.8e-10 67.8 86 46.5
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 1.8e-09 65.9 87 46.0
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 5.9e-08 60.8 83 43.4
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 5.9e-08 60.8 85 40.0
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 7.7e-08 60.5 87 41.4
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 7.7e-08 60.5 86 39.5
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 7.7e-08 60.5 86 38.4
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 1.0e-07 60.1 86 40.7
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 1.3e-07 59.7 86 39.5
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 1.7e-07 59.3 87 40.2
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.2e-07 58.9 87 39.1
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.2e-07 58.9 72 40.3
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 2.2e-07 58.9 86 40.7
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.2e-07 58.9 69 43.5
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 2.9e-07 58.5 85 37.6
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.9e-07 58.5 86 41.9
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 3.8e-07 58.2 87 41.4
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 3.8e-07 58.2 87 39.1
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 3.8e-07 58.2 86 38.4
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 3.8e-07 58.2 86 38.4
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.8e-07 58.2 86 37.2
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 5.0e-07 57.8 87 39.1
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 6.5e-07 57.4 86 43.0
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 6.5e-07 57.4 86 40.7
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 6.5e-07 57.4 83 37.3
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 8.5e-07 57.0 84 36.9
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 8.5e-07 57.0 86 36.0
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 1.1e-06 56.6 86 40.7
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 1.1e-06 56.6 87 37.9
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 1.4e-06 56.2 86 38.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 1.4e-06 56.2 81 43.2
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.4e-06 56.2 87 36.8
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.9e-06 55.8 86 39.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.9e-06 55.8 86 39.5
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 2.5e-06 55.5 85 36.5
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 3.2e-06 55.1 77 41.6
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 3.2e-06 55.1 87 37.9
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 3.2e-06 55.1 83 38.6
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 4.2e-06 54.7 86 39.5
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.2e-06 54.7 85 35.3
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 4.2e-06 54.7 85 35.3
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 4.2e-06 54.7 86 36.0
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 4.2e-06 54.7 86 36.0
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 5.5e-06 54.3 85 37.6
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 5.5e-06 54.3 86 36.0
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 9.4e-06 53.5 86 36.0
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 9.4e-06 53.5 86 37.2
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 9.4e-06 53.5 86 33.7


User provided reference genes

Program Settings