Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05137 Brassica carinata HOM05D002825 ORTHO05D003824 6.4e-57 223.8 107 100.0
BcaC01g05138 Brassica carinata HOM05D002825 ORTHO05D003824 6.4e-57 223.8 107 100.0
BolC3t15357H Brassica oleracea HOM05D002825 ORTHO05D003824 6.4e-57 223.8 107 100.0
BraA03t11721Z Brassica rapa HOM05D002825 ORTHO05D003824 3.0e-54 214.9 107 95.3
BcaC01g05126 Brassica carinata HOM05D002825 ORTHO05D003824 2.6e-50 201.8 107 90.7
AL4G44550 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.0e-46 189.9 105 84.8
C03p30080 Brassica napus HOM05D002825 ORTHO05D003824 8.6e-46 186.8 107 87.9
AL5G42790 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.4e-27 126.3 103 55.3
CARHR170890 Cardamine hirsuta HOM05D002825 ORTHO05D003824 4.0e-27 124.8 105 57.1
AL4G44540 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 6.9e-27 124.0 101 53.5
BcaC01g05129 Brassica carinata HOM05D002825 ORTHO05D003824 1.5e-26 122.9 107 63.6
Carub.0005s2724 Capsella rubella HOM05D002825 ORTHO05D003824 2.6e-26 122.1 103 53.4
BcaC01g05136 Brassica carinata HOM05D002825 ORTHO05D003824 7.6e-26 120.6 101 53.5
A03p25220 Brassica napus HOM05D002825 ORTHO05D003824 7.6e-26 120.6 101 53.5
BolC3t15358H Brassica oleracea HOM05D002825 ORTHO05D003824 7.6e-26 120.6 101 53.5
BcaC01g05123 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-25 119.4 61 90.2
BcaC01g05125 Brassica carinata HOM05D002825 ORTHO05D003824 1.7e-25 119.4 61 90.2
BraA03t11722Z Brassica rapa HOM05D002825 ORTHO05D003824 1.7e-25 119.4 101 52.5
C03p30090 Brassica napus HOM05D002825 ORTHO05D003824 2.9e-25 118.6 101 53.5
Cpa.g.sc113.4 Carica papaya HOM05D002825 ORTHO05D003824 2.3e-22 109.0 107 48.6
BcaC01g05127 Brassica carinata HOM05D002825 ORTHO05D003824 5.1e-22 107.8 92 53.3
Lj6g0026509 Lotus japonicus HOM05D002825 ORTHO05D003824 1.1e-21 106.7 108 47.2
Lalb_Chr18g0061131 Lupinus albus HOM05D002825 ORTHO05D003824 1.1e-21 106.7 107 48.6
VMungo0540G0272 Vigna mungo HOM05D002825 ORTHO05D003824 1.5e-21 106.3 107 48.6
FAN08G2274 Fragaria x ananassa HOM05D002825 ORTHO05D003824 4.3e-21 104.8 108 49.1
Phvul.006G221100 Phaseolus vulgaris HOM05D002825 ORTHO05D003824 9.6e-21 103.6 107 47.7
CsaV3_2G036260 Cucumis sativus L. HOM05D002825 ORTHO05D003824 1.3e-20 103.2 107 44.9
THA.LOC104823675 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 1.3e-20 103.2 113 45.1
THA.LOC104823676 Tarenaya hassleriana HOM05D002825 ORTHO05D003824 1.6e-20 102.8 113 45.1
BcaB01g03268 Brassica carinata HOM05D002825 ORTHO05D003824 2.1e-20 102.4 96 49.0
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 3.7e-20 101.7 107 48.6
MELO3C021840.2 Cucumis melo HOM05D002825 ORTHO05D003824 3.7e-20 101.7 107 44.9
FvH4_5g27880 Fragaria vesca HOM05D002825 ORTHO05D003824 4.8e-20 101.3 107 48.6
FAN18G3010 Fragaria x ananassa HOM05D002825 ORTHO05D003824 4.8e-20 101.3 107 48.6
RcHm_v2.0_Chr3g0472581 Rosa chinensis HOM05D002825 ORTHO05D003824 4.8e-20 101.3 107 47.7
ClCG10G007350 Citrullus lanatus HOM05D002825 ORTHO05D003824 8.1e-20 100.5 107 43.9
FAN04G1220 Fragaria x ananassa HOM05D002825 ORTHO05D003824 1.1e-19 100.1 107 47.7
Sed0018539 Sechium edule HOM05D002825 ORTHO05D003824 1.1e-19 100.1 107 43.9
PGR142G0082 Punica granatum HOM05D002825 ORTHO05D003824 1.4e-19 99.8 107 44.9
Duzib128G0132 Durio zibethinus HOM05D002825 ORTHO05D003824 1.8e-19 99.4 107 43.9
Gohir.D04G010500 Gossypium hirsutum HOM05D002825 ORTHO05D003824 2.4e-19 99.0 107 44.9
Gorai.012G012400 Gossypium raimondii HOM05D002825 ORTHO05D003824 2.4e-19 99.0 107 44.9
AL1G21000 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 3.1e-19 98.6 107 46.7
COL.COLO4_19503 Corchorus olitorius HOM05D002825 ORTHO05D003824 3.1e-19 98.6 107 43.9
Gohir.A05G405100 Gossypium hirsutum HOM05D002825 ORTHO05D003824 3.1e-19 98.6 107 44.9
BcaB08g37339 Brassica carinata HOM05D002825 ORTHO05D003824 4.0e-19 98.2 107 45.8
Glyma.12G164700 Glycine max HOM05D002825 ORTHO05D003824 4.0e-19 98.2 107 44.9
AT1G10270 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 5.3e-19 97.8 107 45.8
Glyma.16G001000 Glycine max HOM05D002825 ORTHO05D003824 5.3e-19 97.8 107 45.8
CiPaw.05G002300 Carya illinoinensis HOM05D002825 ORTHO05D003824 6.9e-19 97.4 107 45.8
Carub.0001s0966 Capsella rubella HOM05D002825 ORTHO05D003824 9.0e-19 97.1 107 45.8
AL3G34220 Arabidopsis lyrata HOM05D002825 ORTHO05D011549 1.2e-18 96.7 96 47.9
AL3G34230 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.2e-18 96.7 96 47.9
BcaC07g41827 Brassica carinata HOM05D002825 ORTHO05D003824 1.5e-18 96.3 107 44.9
C08p49080 Brassica napus HOM05D002825 ORTHO05D003824 1.5e-18 96.3 107 44.9
Sp1g08860 Schrenkiella parvula HOM05D002825 ORTHO05D003824 1.5e-18 96.3 107 44.9
Thecc.10G188300 Theobroma cacao HOM05D002825 ORTHO05D003824 1.5e-18 96.3 107 43.0
Aa31LG1G4670 Aethionema arabicum HOM05D002825 ORTHO05D003824 2.0e-18 95.9 107 45.8
BcaC05g24908 Brassica carinata HOM05D002825 ORTHO05D003824 2.0e-18 95.9 107 44.9
Eucgr.I02789 Eucalyptus grandis HOM05D002825 ORTHO05D003824 2.0e-18 95.9 107 43.0
A09p65140 Brassica napus HOM05D002825 ORTHO05D003824 2.6e-18 95.5 107 43.9
BraA09t41857Z Brassica rapa HOM05D002825 ORTHO05D003824 2.6e-18 95.5 107 43.9
TWI63G1692 Tripterygium wilfordii HOM05D002825 ORTHO05D003824 2.6e-18 95.5 107 45.8
C05p08380 Brassica napus HOM05D002825 ORTHO05D003824 5.8e-18 94.4 107 44.9
BolC5t29589H Brassica oleracea HOM05D002825 ORTHO05D003824 5.8e-18 94.4 107 44.9
CANSAT80G1108 Cannabis sativa HOM05D002825 ORTHO05D003824 5.8e-18 94.4 108 41.7
Thhalv10006738m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 9.9e-18 93.6 107 43.0
A08p34080 Brassica napus HOM05D002825 ORTHO05D003824 1.1e-16 90.1 107 42.1
Potri.003G002950 Populus trichocarpa HOM05D002825 ORTHO05D003824 1.1e-16 90.1 107 42.1
EL10Ac6g14013 Beta vulgaris HOM05D002825 ORTHO05D003824 2.4e-16 89.0 105 43.8
BcaC07g38540 Brassica carinata HOM05D002825 ORTHO05D003824 2.4e-16 89.0 107 42.1
C08p13530 Brassica napus HOM05D002825 ORTHO05D003824 2.4e-16 89.0 107 42.1
BolC8t48989H Brassica oleracea HOM05D002825 ORTHO05D003824 2.4e-16 89.0 107 42.1
BraA08t35321Z Brassica rapa HOM05D002825 ORTHO05D003824 2.4e-16 89.0 107 42.1
CARHR010370 Cardamine hirsuta HOM05D002825 ORTHO05D003824 2.4e-16 89.0 107 43.0
Sabra01G0172800 Salix brachista HOM05D002825 ORTHO05D003824 3.2e-16 88.6 107 41.1
Hund15406 Selenicereus undatus HOM05D002825 ORTHO05D003824 3.2e-16 88.6 107 43.0
Hma1.2p1_0052F.1_g029920 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 4.2e-16 88.2 107 40.2
Thhalv10023497m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 5.5e-16 87.8 102 45.1
Potri.004G227800 Populus trichocarpa HOM05D002825 ORTHO05D003824 5.5e-16 87.8 107 40.2
Atru.chr13.1188 Acer truncatum HOM05D002825 ORTHO05D003824 1.2e-15 86.7 107 42.1
AL1G60310 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.2e-15 86.7 102 44.1
A06p06900 Brassica napus HOM05D002825 ORTHO05D003824 2.7e-15 85.5 107 41.1
BraA06t23906Z Brassica rapa HOM05D002825 ORTHO05D003824 2.7e-15 85.5 107 41.1
Ciclev10000271m.g Citrus clementina HOM05D002825 ORTHO05D003824 3.5e-15 85.1 107 39.3
Nn8g41098 Nelumbo nucifera HOM05D002825 ORTHO05D003824 6.0e-15 84.3 109 41.3
GSVIVG01023159001 Vitis vinifera HOM05D002825 ORTHO05D003824 7.9e-15 84.0 107 40.2
CARHR140100 Cardamine hirsuta HOM05D002825 ORTHO05D003824 5.1e-14 81.3 102 41.2
Manes.07G028200 Manihot esculenta HOM05D002825 ORTHO05D003824 5.1e-14 81.3 107 40.2
Lj9A281T41 Lonicera japonica HOM05D002825 ORTHO05D003824 2.5e-13 79.0 104 38.5
Atru.chr6.351 Acer truncatum HOM05D002825 ORTHO05D003824 4.3e-13 78.2 107 38.3
Atru.chr6.402 Acer truncatum HOM05D002825 ORTHO05D003824 4.3e-13 78.2 107 38.3
CDE05G3403 Ceratophyllum demersum HOM05D003531 ORTHO05D004354 4.3e-13 78.2 99 39.4
Oeu044734.1 Olea europaea HOM05D002825 ORTHO05D003824 5.6e-13 77.8 107 34.6
Carub.0007s2495 Capsella rubella HOM05D002825 ORTHO05D003824 7.4e-13 77.4 105 36.2
Carub.0004s2842 Capsella rubella HOM05D002825 ORTHO05D011549 2.1e-12 75.9 102 40.2
TAR376G0418 Trochodendron aralioides HOM05D002825 ORTHO05D003824 2.8e-12 75.5 109 37.6
Carub.0004s2841 Capsella rubella HOM05D002825 ORTHO05D003824 3.7e-12 75.1 86 44.2
TPR.G26202 Trifolium pratense HOM05D002825 ORTHO05D003824 4.8e-12 74.7 107 41.1
TAR628G0533 Trochodendron aralioides HOM05D002825 ORTHO05D003824 4.8e-12 74.7 109 35.8
AT3G60980 Arabidopsis thaliana HOM05D002825 ORTHO05D003824 6.2e-12 74.3 97 40.2
Psat7g131880 Pisum sativum HOM05D002825 ORTHO05D003824 8.2e-12 73.9 72 51.4
BcaC09g48563 Brassica carinata HOM05D002825 ORTHO05D003824 1.4e-11 73.2 99 39.4
BolC1t04813H Brassica oleracea HOM05D002825 ORTHO05D003824 1.4e-11 73.2 99 39.4
ECA236G4782 Erigeron canadensis HOM05D002825 ORTHO05D003824 1.4e-11 73.2 107 34.6
AUR62000337 Chenopodium quinoa HOM05D002825 ORTHO05D003824 1.8e-11 72.8 107 36.4
BcaC02g12622 Brassica carinata HOM05D002825 ORTHO05D011549 2.4e-11 72.4 104 34.6
C01p48580 Brassica napus HOM05D002825 ORTHO05D003824 2.4e-11 72.4 99 39.4
BolC4t21754H Brassica oleracea HOM05D002825 ORTHO05D011549 2.4e-11 72.4 104 34.6
Medtr8g102650 Medicago truncatula HOM05D002825 ORTHO05D003824 3.1e-11 72.0 73 46.6
DCAR_003286 Daucus carota HOM05D002825 ORTHO05D003824 4.0e-11 71.6 107 35.5
Lsat_1_v5_gn_7_77221 Lactuca sativa HOM05D002825 ORTHO05D003824 4.0e-11 71.6 107 33.6
Nitab4.5_0001057g0030 Nicotiana tabacum HOM05D002825 ORTHO05D003824 4.0e-11 71.6 104 34.6
Peaxi162Scf00011g01628 Petunia axillaris HOM05D002825 ORTHO05D003824 9.0e-11 70.5 104 33.7
MSTRG.5190 Avicennia marina HOM05D002825 ORTHO05D003824 1.2e-10 70.1 107 32.7
BcaB02g09551 Brassica carinata HOM05D002825 ORTHO05D011549 1.2e-10 70.1 92 39.1
C04p01010 Brassica napus HOM05D002825 ORTHO05D011549 1.2e-10 70.1 112 34.8
CARHR265210 Cardamine hirsuta HOM05D002825 ORTHO05D011549 1.2e-10 70.1 93 43.0
PSO339G5268 Papaver somniferum HOM05D002825 ORTHO05D003824 1.2e-10 70.1 108 34.3
ECA236G2567 Erigeron canadensis HOM05D002825 ORTHO05D003824 2.0e-10 69.3 107 33.6
Migut.N00860 Erythranthe guttata HOM05D002825 ORTHO05D003824 2.0e-10 69.3 107 31.8
Thhalv10023949m.g Eutrema salsugineum HOM05D002825 ORTHO05D003824 2.0e-10 69.3 99 39.4
A05p00840 Brassica napus HOM05D002825 ORTHO05D011549 2.6e-10 68.9 90 37.8
BraA05t19087Z Brassica rapa HOM05D002825 ORTHO05D011549 2.6e-10 68.9 90 37.8
BcaC02g09004 Brassica carinata HOM05D002825 ORTHO05D011549 4.5e-10 68.2 92 38.0
BcaC02g12609 Brassica carinata HOM05D002825 ORTHO05D011549 4.5e-10 68.2 92 38.0
BolC4t21737H Brassica oleracea HOM05D002825 ORTHO05D011549 4.5e-10 68.2 92 38.0
DCAR_022278 Daucus carota HOM05D002825 ORTHO05D003824 4.5e-10 68.2 107 33.6
AL5G43830 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 5.8e-10 67.8 98 38.8
TPR.G40676 Trifolium pratense HOM05D002825 ORTHO05D003824 5.8e-10 67.8 63 52.4
BcaC02g12824 Brassica carinata HOM05D002825 ORTHO05D011549 7.6e-10 67.4 92 37.0
Os05g0365500 Oryza sativa ssp. japonica HOM05D002825 ORTHO05D003824 7.6e-10 67.4 84 41.7
BcaC02g12597 Brassica carinata HOM05D002825 ORTHO05D011549 1.0e-09 67.0 92 38.0
C07p48550 Brassica napus HOM05D002825 ORTHO05D003824 1.0e-09 67.0 104 31.7
BolC7t45363H Brassica oleracea HOM05D002825 ORTHO05D003824 1.0e-09 67.0 104 31.7
Aqoxy6G00055 Aquilegia oxysepala HOM05D002825 ORTHO05D003824 1.3e-09 66.6 92 37.0
BolC4t21716H Brassica oleracea HOM05D002825 ORTHO05D011549 1.3e-09 66.6 99 37.4
BcaNung04658 Brassica carinata HOM05D002825 ORTHO05D003824 2.9e-09 65.5 100 35.0
BcaC06g33535 Brassica carinata HOM05D002825 ORTHO05D003824 3.8e-09 65.1 104 30.8
CAN.G855.39 Capsicum annuum HOM05D002825 ORTHO05D003824 3.8e-09 65.1 104 32.7
Nitab4.5_0001129g0060 Nicotiana tabacum HOM05D002825 ORTHO05D003824 3.8e-09 65.1 104 31.7
Solyc01g103160.3 Solanum lycopersicum HOM05D002825 ORTHO05D003824 3.8e-09 65.1 104 31.7
Sopen01g045570 Solanum pennellii HOM05D002825 ORTHO05D003824 3.8e-09 65.1 104 31.7
Dinv29670 Davidia involucrata HOM05D002825 ORTHO05D003824 4.9e-09 64.7 93 36.6
Medtr7g069270 Medicago truncatula HOM05D002825 ORTHO05D003824 8.4e-09 63.9 101 38.6
Sc19g0003420 Simmondsia chinensis HOM05D002825 ORTHO05D003824 1.1e-08 63.5 104 38.5
PGSC0003DMG400024905 Solanum tuberosum HOM05D002825 ORTHO05D003824 1.1e-08 63.5 104 30.8
CSS0030972 Camellia sinensis var. sinensis HOM05D002825 ORTHO05D003824 1.4e-08 63.2 102 34.3
Hma1.2p1_0062F.1_g034310 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 1.4e-08 63.2 66 43.9
Hma1.2p1_0604F.1_g187753 Hydrangea macrophylla HOM05D002825 ORTHO05D003824 1.4e-08 63.2 66 43.9
PSO384G0639 Papaver somniferum HOM05D002825 ORTHO05D003824 1.4e-08 63.2 87 36.8
Ah.11g046920 Amaranthus hybridus HOM05D002825 ORTHO05D003824 2.5e-08 62.4 107 33.6
SGA_v2.0_scaffold100G29546 Striga asiatica HOM05D002825 ORTHO05D003824 2.5e-08 62.4 87 34.5
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 3.2e-08 62.0 108 36.1
HPP92_003447 Vanilla planifolia HOM05D002825 ORTHO05D003824 3.2e-08 62.0 85 40.0
A05p25940 Brassica napus HOM05D002825 ORTHO05D011549 4.2e-08 61.6 61 44.3
Sc06g0000730 Simmondsia chinensis HOM05D002825 ORTHO05D003824 4.2e-08 61.6 63 46.0
Cfa004457 Carpinus fangiana HOM05D002825 ORTHO05D003824 7.1e-08 60.8 63 49.2
Haze_10006 Corylus avellana HOM05D002825 ORTHO05D003824 7.1e-08 60.8 63 49.2
Prupe.1G583600 Prunus persica HOM05D002825 ORTHO05D003824 7.1e-08 60.8 60 50.0
AL5G43650 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.2e-07 60.1 123 29.3
BcaC08g45156 Brassica carinata HOM05D002825 ORTHO05D021407 2.7e-07 58.9 78 38.5
RcHm_v2.0_Chr7g0220071 Rosa chinensis HOM05D002825 ORTHO05D003824 4.6e-07 58.2 60 48.3
AL5G29610 Arabidopsis lyrata HOM05D002825 ORTHO05D003824 1.3e-06 56.6 115 29.6
MD15G1441500 Malus domestica HOM05D002825 ORTHO05D003824 1.3e-06 56.6 60 46.7
Medtr7g069290 Medicago truncatula HOM05D002825 ORTHO05D003824 1.3e-06 56.6 105 36.2
Carub.0005s2723 Capsella rubella HOM05D002825 ORTHO05D023647 1.8e-06 56.2 102 27.5
Dinv29621 Davidia involucrata HOM05D002825 ORTHO05D003824 1.8e-06 56.2 60 43.3
SEGI_04314 Sequoiadendron giganteum HOM05D006156 ORTHO05D007699 2.3e-06 55.8 90 26.7
Lsat_1_v5_gn_5_91740 Lactuca sativa HOM05D002825 ORTHO05D003824 3.0e-06 55.5 92 33.7
QL02p102471 Quercus lobata HOM05D002825 ORTHO05D003824 3.0e-06 55.5 60 46.7
QL02p103093 Quercus lobata HOM05D002825 ORTHO05D003824 3.0e-06 55.5 60 46.7


User provided reference genes

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