Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-209 732.6 372 100.0
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.7e-205 719.2 372 98.1
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.0e-202 709.9 372 98.1
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 7.1e-196 687.2 372 94.1
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 3.0e-186 655.2 372 89.0
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 5.1e-186 654.4 372 89.0
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 2.5e-185 652.1 372 88.7
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 2.5e-185 652.1 372 88.7
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 4.8e-184 647.9 372 92.2
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.0e-182 642.5 373 87.9
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 3.3e-177 625.2 380 87.9
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.6e-176 622.9 375 86.7
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 6.9e-175 617.5 373 86.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.5e-174 614.8 351 88.3
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 2.1e-168 595.9 376 82.4
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.9e-164 582.8 375 78.9
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.6e-163 579.7 375 79.7
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.6e-155 551.6 378 76.5
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.7e-123 446.0 380 63.4
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 6.8e-122 441.4 374 62.3
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 7.5e-121 438.0 379 60.7
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 9.8e-121 437.6 379 61.2
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 2.2e-120 436.4 373 61.4
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.4e-119 433.7 386 59.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.1e-119 432.6 380 60.5
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.2e-118 430.6 385 60.0
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.0e-118 429.9 374 61.2
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 2.7e-118 429.5 379 59.4
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 5.9e-118 428.3 294 76.9
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.9e-118 428.3 380 60.5
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 7.7e-118 427.9 384 60.2
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.0e-117 427.6 386 59.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.3e-117 427.2 386 58.5
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 3.8e-117 425.6 380 58.4
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 6.5e-117 424.9 380 60.0
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.5e-116 423.7 379 59.4
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.9e-116 423.3 386 58.8
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.9e-116 423.3 380 58.7
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.2e-116 422.5 381 59.1
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 4.2e-116 422.2 380 59.5
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 9.5e-116 421.0 377 58.6
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.2e-115 420.6 380 58.7
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.2e-115 420.6 374 58.8
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.2e-115 420.6 380 57.9
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.6e-115 420.2 380 58.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 2.3e-114 416.4 374 57.5
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 5.2e-114 415.2 380 57.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 8.8e-114 414.5 380 58.9
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 2.2e-112 409.8 343 62.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 8.3e-112 407.9 375 56.8
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 1.4e-111 407.1 377 59.7
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.8e-111 406.8 376 56.6
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.0e-110 403.3 380 56.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.0e-110 403.3 375 57.1
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 2.7e-110 402.9 384 56.8
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 2.7e-110 402.9 385 54.5
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.7e-110 402.9 378 57.4
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 7.8e-110 401.4 381 57.5
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 7.8e-110 401.4 374 57.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 1.0e-109 401.0 379 56.5
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.0e-109 401.0 376 56.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-109 400.6 377 57.0
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-109 400.6 377 57.0
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.7e-109 400.2 373 56.8
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.3e-109 399.8 387 55.6
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.9e-109 399.4 379 55.9
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 2.9e-109 399.4 377 55.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 1.5e-108 397.1 374 55.9
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.9e-108 396.7 373 56.0
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.9e-108 396.7 385 55.1
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 5.6e-108 395.2 380 55.0
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 7.3e-108 394.8 373 57.6
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 2.1e-107 393.3 378 55.3
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.3e-106 389.8 380 54.7
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 3.0e-106 389.4 374 55.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.4e-105 386.0 373 55.5
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 4.4e-105 385.6 382 54.5
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 5.7e-105 385.2 364 58.0
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 9.8e-105 384.4 374 55.1
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 9.8e-105 384.4 370 55.1
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 1.3e-104 384.0 379 55.1
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.7e-104 383.6 379 53.3
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 5.4e-103 378.6 423 51.1
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.6e-102 377.1 374 52.7
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 2.0e-102 376.7 351 56.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 2.7e-102 376.3 409 52.6
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.3e-101 373.2 358 56.4
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 3.9e-101 372.5 381 53.3
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.9e-101 372.5 354 55.4
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 1.1e-100 370.9 351 54.7
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.5e-100 370.5 374 52.4
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 7.3e-100 368.2 352 58.0
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 3.6e-99 365.9 366 53.3
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 4.7e-99 365.5 385 53.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 8.0e-99 364.8 370 54.1
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.4e-98 364.0 379 53.6
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.7e-96 357.1 329 56.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.9e-96 355.5 380 49.2
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.1e-95 354.4 393 51.1
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.4e-95 354.0 354 54.0
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 5.4e-95 352.1 339 56.0
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.6e-94 350.5 374 53.2
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 3.5e-94 349.4 380 48.7
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.0e-94 348.6 381 49.1
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.0e-94 348.6 381 49.1
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 8.6e-93 344.7 381 51.2
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.5e-92 343.2 381 49.3
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 4.3e-92 342.4 380 51.3
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.2e-91 340.9 336 55.4
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.6e-91 340.5 355 53.2
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.1e-91 340.1 333 56.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.7e-91 339.0 401 46.6
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 2.3e-90 336.7 356 50.3
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 2.3e-90 336.7 304 58.6
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.4e-88 328.6 373 51.7
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 8.3e-88 328.2 389 46.8
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.4e-87 326.6 335 54.0
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 7.1e-87 325.1 374 48.1
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 7.3e-84 315.1 351 52.7
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.3e-77 294.3 311 52.1
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.0e-74 281.6 383 45.4
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 9.9e-73 278.1 389 40.6
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.9e-71 273.9 347 44.7
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 2.1e-67 260.4 483 36.2
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.8e-67 260.0 410 39.8
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.4e-66 257.7 306 49.0
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 5.3e-66 255.8 386 39.6
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.4e-63 246.9 387 38.5
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 4.2e-63 246.1 224 60.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 9.3e-63 245.0 249 53.0
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.8e-61 240.7 283 51.6
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 6.2e-59 232.3 297 49.2
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 3.3e-52 209.9 262 48.9
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 3.3e-52 209.9 340 36.5
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.8e-50 204.1 247 48.2
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 3.1e-50 203.4 382 34.3
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.5e-49 199.5 221 48.0
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 4.9e-48 196.1 271 44.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.1e-46 190.7 258 46.9
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.3e-45 188.0 241 46.5
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.4e-44 182.2 210 49.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 8.2e-43 178.7 159 56.6
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 6.1e-38 162.5 140 57.9
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.4e-34 151.4 118 64.4
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.5e-33 146.4 151 56.3
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.2e-23 113.6 73 67.1
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.6e-22 110.2 122 49.2
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 4.4e-20 103.2 402 24.6
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 1.3e-19 101.7 179 36.3
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 2.9e-16 90.5 58 75.9
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 3.3e-12 77.0 75 53.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 7.0e-10 69.3 42 76.2
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 2.9e-08 63.9 51 58.8
BcaC04g20550 Brassica carinata HOM05D016321 ORTHO05D090386 8.0e-06 55.8 75 46.7
RcHm_v2.0_Chr1g0351881 Rosa chinensis HOM05D004815 ORTHO05D005742 8.0e-06 55.8 34 82.4


User provided reference genes

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