Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-138 496.5 240 100.0
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.5e-138 495.4 240 99.6
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 1.3e-137 493.0 240 99.2
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 1.0e-134 483.4 240 97.5
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 3.8e-134 481.5 240 97.1
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 1.0e-126 456.8 240 92.9
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-125 453.4 240 92.9
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 1.4e-125 453.0 238 93.7
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 3.2e-125 451.8 239 92.1
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 1.8e-123 446.0 240 92.5
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.3e-123 445.7 235 93.2
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 1.1e-122 443.4 240 91.7
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 1.1e-122 443.4 235 92.3
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.5e-122 443.0 240 91.2
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 9.1e-120 433.7 235 90.2
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 2.0e-119 432.6 235 90.2
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 6.1e-116 421.0 240 87.5
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 4.0e-99 365.2 212 84.4
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 3.5e-95 352.1 240 71.2
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 2.5e-93 345.9 214 74.8
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.2e-92 343.6 236 69.1
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 2.8e-92 342.4 214 73.4
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 2.8e-92 342.4 214 73.4
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 3.6e-92 342.0 218 72.0
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 4.7e-92 341.7 221 74.2
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.8e-91 339.7 214 72.4
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.8e-91 339.7 214 72.4
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 3.0e-91 339.0 214 73.4
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 3.0e-91 339.0 214 74.3
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 4.0e-91 338.6 218 71.6
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.8e-91 337.8 221 71.0
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 6.8e-91 337.8 214 72.9
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 8.9e-91 337.4 214 73.4
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 1.2e-90 337.0 218 70.6
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.2e-90 337.0 231 68.8
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.2e-90 337.0 236 68.2
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 2.0e-90 336.3 214 73.8
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 2.0e-90 336.3 221 70.6
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.6e-90 335.9 231 71.0
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 2.6e-90 335.9 214 71.0
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 3.4e-90 335.5 214 74.8
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.4e-90 335.1 221 71.0
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 5.7e-90 334.7 218 71.6
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 7.5e-90 334.3 214 74.3
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 7.5e-90 334.3 214 71.0
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 1.7e-89 333.2 214 72.4
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.7e-89 333.2 218 71.1
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 2.9e-89 332.4 214 72.9
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.9e-89 332.4 214 70.1
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.7e-89 332.0 236 67.4
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.7e-89 332.0 240 67.9
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 3.7e-89 332.0 240 66.2
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 4.9e-89 331.6 214 72.9
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 8.3e-89 330.9 218 71.1
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 8.3e-89 330.9 218 70.2
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.1e-88 330.5 236 67.4
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 1.4e-88 330.1 214 72.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-88 330.1 218 71.1
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 7.0e-88 327.8 240 66.7
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 9.2e-88 327.4 214 71.5
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 9.2e-88 327.4 223 70.0
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 9.2e-88 327.4 228 68.9
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 1.2e-87 327.0 235 67.7
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-87 326.6 214 70.6
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 2.7e-87 325.9 236 67.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.7e-87 325.9 236 66.5
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.5e-87 325.5 214 72.0
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 5.9e-87 324.7 258 62.4
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 7.8e-87 324.3 231 66.7
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 1.3e-86 323.6 236 66.5
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.9e-86 322.0 221 67.9
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 6.6e-86 321.2 240 64.6
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 8.6e-86 320.9 236 64.0
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.1e-85 320.5 236 65.7
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.9e-85 319.7 218 67.0
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.9e-85 319.7 240 64.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-85 319.3 236 64.0
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.3e-85 318.5 240 64.2
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.6e-85 318.2 218 67.0
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.2e-84 317.0 244 62.7
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 1.6e-84 316.6 230 66.1
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 2.1e-84 316.2 221 66.5
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.8e-84 315.8 238 66.8
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.8e-84 315.8 235 67.2
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 6.2e-84 314.7 214 69.2
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 3.1e-83 312.4 239 64.4
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.1e-83 312.4 215 67.4
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 4.0e-83 312.0 224 66.5
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 4.0e-83 312.0 215 68.4
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.0e-83 312.0 215 68.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 5.2e-83 311.6 214 68.2
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.4e-82 308.9 215 68.4
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.4e-82 308.9 221 66.1
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 5.8e-82 308.1 212 67.9
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 5.8e-82 308.1 215 66.0
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 7.5e-82 307.8 214 68.2
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-81 307.0 236 66.9
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-81 307.0 236 66.9
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.7e-81 306.6 207 70.0
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.3e-81 304.3 234 61.5
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.4e-80 303.5 241 62.2
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 1.4e-80 303.5 241 62.2
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.4e-80 303.5 246 60.6
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 5.4e-80 301.6 215 66.0
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.4e-80 301.6 214 66.8
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 7.0e-80 301.2 233 63.1
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 1.6e-79 300.1 234 63.7
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 2.7e-79 299.3 236 64.8
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 3.5e-79 298.9 239 61.5
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 6.0e-79 298.1 215 64.7
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 1.3e-78 297.0 228 62.3
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.0e-78 295.8 214 68.2
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 3.0e-78 295.8 214 67.3
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.0e-78 295.8 242 60.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.6e-78 294.3 234 60.3
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 2.5e-77 292.7 236 61.0
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 5.6e-77 291.6 236 62.7
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 1.1e-75 287.3 259 56.0
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 8.9e-75 284.3 225 59.6
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.2e-74 283.9 215 62.8
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.7e-73 280.0 239 59.8
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.9e-72 276.6 225 59.6
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.3e-70 270.4 173 72.8
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.5e-69 266.2 192 72.9
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 4.3e-69 265.4 214 63.1
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 3.6e-68 262.3 188 67.0
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 4.7e-68 261.9 181 67.4
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 5.2e-67 258.5 234 56.8
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.3e-65 253.8 246 50.4
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 4.9e-65 251.9 223 56.5
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 3.0e-62 242.7 236 53.8
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.2e-60 235.0 163 68.1
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 4.4e-58 228.8 159 66.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 5.8e-58 228.4 160 65.0
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 5.4e-56 221.9 174 62.6
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 2.1e-55 219.9 226 49.1
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 2.8e-52 209.5 233 46.8
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.1e-52 208.0 177 59.3
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 1.8e-51 206.8 188 59.0
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.3e-49 200.7 152 69.1
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 9.3e-48 194.5 216 46.8
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.7e-47 193.0 216 46.3
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.3e-44 184.1 146 65.1
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.5e-42 177.2 120 64.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 1.1e-40 171.0 133 57.9
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 3.4e-34 149.4 220 39.1
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 1.3e-33 147.5 90 73.3
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 6.7e-30 135.2 99 58.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.1e-29 134.4 90 75.6
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 3.7e-28 129.4 87 70.1
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 8.2e-28 128.3 217 35.9
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 3.4e-26 122.9 158 43.0
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.6e-23 114.0 81 79.0
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 1.8e-22 110.5 92 58.7
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 6.3e-20 102.1 85 61.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.4e-19 100.1 202 28.2
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 7.7e-18 95.1 67 65.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 3.8e-17 92.8 58 75.9
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.8e-17 92.8 58 75.9
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.9e-16 90.5 63 68.3
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 7.2e-16 88.6 63 66.7
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.7e-15 86.7 115 39.1
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 4.4e-13 79.3 51 70.6
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 6.9e-11 72.0 152 30.9
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-09 67.4 49 67.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.0e-06 58.2 55 63.6
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 6.7e-06 55.5 53 60.4


User provided reference genes

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