Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 1.1e-82 310.1 169 100.0
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 1.6e-49 199.9 204 64.2
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 1.6e-49 199.9 204 64.2
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 8.8e-45 184.1 179 65.9
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 9.1e-42 174.1 184 62.0
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 2.7e-41 172.6 183 62.8
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 2.3e-40 169.5 183 61.2
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 1.1e-39 167.2 183 60.1
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 3.3e-39 165.6 185 61.1
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 3.3e-39 165.6 185 61.1
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 4.2e-39 165.2 193 58.5
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 7.2e-39 164.5 184 60.9
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 1.6e-38 163.3 181 61.9
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 4.0e-37 158.7 185 60.0
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 2.6e-36 156.0 189 56.1
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 2.8e-35 152.5 117 74.4
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.8e-35 152.5 158 60.8
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 8.3e-35 151.0 181 57.5
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 4.7e-30 135.2 175 53.7
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 3.7e-11 72.4 70 54.3
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 4.9e-11 72.0 116 40.5
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 7.1e-10 68.2 119 39.5
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 1.2e-09 67.4 70 55.7
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 1.2e-09 67.4 126 39.7
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 1.6e-09 67.0 69 52.2
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.7e-09 66.2 70 47.1
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 2.7e-09 66.2 70 50.0
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 3.5e-09 65.9 85 48.2
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 3.5e-09 65.9 125 37.6
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 3.5e-09 65.9 109 39.4
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 6.0e-09 65.1 76 50.0
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 6.0e-09 65.1 71 52.1
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 6.0e-09 65.1 125 36.8
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 7.8e-09 64.7 77 46.8
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 7.8e-09 64.7 115 37.4
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.0e-08 64.3 92 42.4
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 1.0e-08 64.3 76 48.7
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 1.0e-08 64.3 76 48.7
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.3e-08 63.2 85 48.2
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 2.3e-08 63.2 76 47.4
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 3.0e-08 62.8 126 34.1
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 3.0e-08 62.8 117 41.9
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 3.9e-08 62.4 87 46.0
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 3.9e-08 62.4 93 40.9
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 3.9e-08 62.4 100 41.0
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 5.1e-08 62.0 70 48.6
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 8.6e-08 61.2 118 34.7
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-07 60.8 76 47.4
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 1.1e-07 60.8 76 46.1
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 1.5e-07 60.5 118 39.0
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 1.9e-07 60.1 88 45.5
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 1.9e-07 60.1 76 42.1
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 2.5e-07 59.7 115 36.5
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 2.5e-07 59.7 76 43.4
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.3e-07 59.3 84 47.6
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 3.3e-07 59.3 85 44.7
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 3.3e-07 59.3 85 44.7
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 4.3e-07 58.9 125 38.4
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.3e-07 58.9 70 47.1
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 4.3e-07 58.9 76 46.1
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 4.3e-07 58.9 71 43.7
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 5.6e-07 58.5 76 46.1
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 5.6e-07 58.5 76 46.1
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 5.6e-07 58.5 77 42.9
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 9.5e-07 57.8 70 47.1
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 1.2e-06 57.4 105 37.1
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.6e-06 57.0 71 46.5
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.6e-06 57.0 71 47.9
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 2.1e-06 56.6 83 44.6
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 2.8e-06 56.2 122 36.1
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.8e-06 56.2 85 43.5
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.8e-06 56.2 70 47.1
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 2.8e-06 56.2 115 34.8
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.7e-06 55.5 71 45.1
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 8.1e-06 54.7 70 42.9
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 8.1e-06 54.7 70 42.9


User provided reference genes

Program Settings