Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05012 Brassica carinata HOM05D013583 ORTHO05D016059 1.2e-49 199.5 97 100.0
BcaC03g17451 Brassica carinata HOM05D013583 ORTHO05D016059 3.6e-35 151.4 113 69.0
BcaC06g31512 Brassica carinata HOM05D013583 ORTHO05D016059 9.0e-18 93.6 58 79.3
CARHR227760 Cardamine hirsuta HOM05D002960 ORTHO05D003632 1.3e-13 79.7 58 62.1
AL7G32940 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 3.0e-13 78.6 58 62.1
A01p12530 Brassica napus HOM05D002960 ORTHO05D003632 3.0e-13 78.6 58 60.3
BraA01t01198Z Brassica rapa HOM05D002960 ORTHO05D003632 3.0e-13 78.6 58 60.3
BcaNung03836 Brassica carinata HOM05D002960 ORTHO05D003632 3.9e-13 78.2 58 60.3
Sp7g19260 Schrenkiella parvula HOM05D002960 ORTHO05D003632 3.9e-13 78.2 58 62.1
BcaC09g51249 Brassica carinata HOM05D002960 ORTHO05D003632 5.1e-13 77.8 58 60.3
C01p15120 Brassica napus HOM05D002960 ORTHO05D003632 5.1e-13 77.8 58 60.3
BolC1t01461H Brassica oleracea HOM05D002960 ORTHO05D003632 5.1e-13 77.8 58 60.3
Thhalv10024622m.g Eutrema salsugineum HOM05D002960 ORTHO05D003632 6.7e-13 77.4 58 56.9
Carub.0007s2025 Capsella rubella HOM05D002960 ORTHO05D003632 1.1e-12 76.6 58 62.1
AT4G21180 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 5.7e-12 74.3 58 58.6
TWI14G0129 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 1.4e-10 69.7 61 54.1
Sed0001248 Sechium edule HOM05D002960 ORTHO05D003632 1.8e-10 69.3 63 50.8
MD01G1210000 Malus domestica HOM05D002960 ORTHO05D003632 2.4e-10 68.9 60 53.3
TWI39G0419 Tripterygium wilfordii HOM05D002960 ORTHO05D003632 3.1e-10 68.6 61 52.5
Prupe.2G302300 Prunus persica HOM05D002960 ORTHO05D003632 6.9e-10 67.4 60 53.3
AL2G41600 Arabidopsis lyrata HOM05D002960 ORTHO05D003632 1.2e-09 66.6 60 55.0
Carub.0002s2756 Capsella rubella HOM05D002960 ORTHO05D003632 1.2e-09 66.6 60 55.0
CiPaw.04G140400 Carya illinoinensis HOM05D002960 ORTHO05D003632 1.2e-09 66.6 60 48.3
A07p26400 Brassica napus HOM05D002960 ORTHO05D003632 1.5e-09 66.2 60 55.0
C06p28790 Brassica napus HOM05D002960 ORTHO05D003632 1.5e-09 66.2 60 55.0
BolC6t38049H Brassica oleracea HOM05D002960 ORTHO05D003632 1.5e-09 66.2 60 55.0
BraA07t30284Z Brassica rapa HOM05D002960 ORTHO05D003632 1.5e-09 66.2 60 55.0
SalBow4G0209 Salvia bowleyana HOM05D002960 ORTHO05D003632 1.5e-09 66.2 61 49.2
GSVIVG01028825001 Vitis vinifera HOM05D002960 ORTHO05D003632 1.5e-09 66.2 60 51.7
CSS0002001 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 2.0e-09 65.9 60 51.7
Cpa.g.sc107.126 Carica papaya HOM05D002960 ORTHO05D003632 2.0e-09 65.9 60 53.3
ClCG05G008490 Citrullus lanatus HOM05D002960 ORTHO05D003632 2.0e-09 65.9 60 50.0
CsaV3_3G017580 Cucumis sativus L. HOM05D002960 ORTHO05D003632 2.0e-09 65.9 60 50.0
Aa31LG4G250 Aethionema arabicum HOM05D002960 ORTHO05D003632 2.6e-09 65.5 60 51.7
Aqoxy1G00557 Aquilegia oxysepala HOM05D002960 ORTHO05D003632 3.4e-09 65.1 60 51.7
AT1G79940 Arabidopsis thaliana HOM05D002960 ORTHO05D003632 3.4e-09 65.1 60 53.3
Thhalv10018223m.g Eutrema salsugineum HOM05D002960 ORTHO05D003632 3.4e-09 65.1 60 53.3
MD07G1280100 Malus domestica HOM05D002960 ORTHO05D003632 3.4e-09 65.1 60 51.7
Manes.06G153311 Manihot esculenta HOM05D002960 ORTHO05D003632 3.4e-09 65.1 60 51.7
RcHm_v2.0_Chr1g0378591 Rosa chinensis HOM05D002960 ORTHO05D003632 3.4e-09 65.1 60 51.7
CSS0035474 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 5.9e-09 64.3 60 51.7
Ciclev10030891m.g Citrus clementina HOM05D002960 ORTHO05D003632 5.9e-09 64.3 60 51.7
Sed0004875 Sechium edule HOM05D002960 ORTHO05D003632 5.9e-09 64.3 60 48.3
Hma1.2p1_1713F.1_g298870 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 7.6e-09 63.9 63 47.6
Lj6g0018011 Lotus japonicus HOM05D002960 ORTHO05D003632 7.6e-09 63.9 59 49.2
Lj2A132T53 Lonicera japonica HOM05D002960 ORTHO05D003632 1.0e-08 63.5 60 50.0
Lalb_Chr11g0073951 Lupinus albus HOM05D002960 ORTHO05D003632 1.0e-08 63.5 59 49.2
Migut.F00279 Erythranthe guttata HOM05D002960 ORTHO05D003632 1.3e-08 63.2 60 53.3
Gohir.A12G253400 Gossypium hirsutum HOM05D002960 ORTHO05D003632 1.3e-08 63.2 60 50.0
Gorai.008G273800 Gossypium raimondii HOM05D002960 ORTHO05D003632 1.3e-08 63.2 60 50.0
Sp5g35840 Schrenkiella parvula HOM05D002960 ORTHO05D003632 1.3e-08 63.2 60 50.0
Actinidia05449 Actinidia chinensis HOM05D002960 ORTHO05D003632 1.7e-08 62.8 60 51.7
CARHR074540 Cardamine hirsuta HOM05D002960 ORTHO05D003632 1.7e-08 62.8 60 50.0
DCAR_008897 Daucus carota HOM05D002960 ORTHO05D003632 1.7e-08 62.8 60 50.0
Duzib084G0224 Durio zibethinus HOM05D002960 ORTHO05D003632 1.7e-08 62.8 60 51.7
QL11p003257 Quercus lobata HOM05D002960 ORTHO05D003632 1.7e-08 62.8 60 46.7
Thecc.03G185900 Theobroma cacao HOM05D002960 ORTHO05D003632 2.2e-08 62.4 60 51.7
arahy.Tifrunner.gnm1.ann1.0GK98G Arachis hypogaea HOM05D002960 ORTHO05D003632 2.9e-08 62.0 59 47.5
arahy.Tifrunner.gnm1.ann1.LVPM4A Arachis hypogaea HOM05D002960 ORTHO05D003632 2.9e-08 62.0 59 47.5
MSTRG.8700 Avicennia marina HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 46.7
Cfa019929 Carpinus fangiana HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 46.7
FvH4_7g30440 Fragaria vesca HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
FAN01G2731 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
FAN03G0384 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
FAN03G1579 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
FAN06G4953 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
FAN10G1974 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
FAN10G3414 Fragaria x ananassa HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
Nn1g01680 Nelumbo nucifera HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 50.0
PGR042G1381 Punica granatum HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 48.3
Sabra17G0124100 Salix brachista HOM05D002960 ORTHO05D003632 2.9e-08 62.0 60 51.7
Aqoxy3G00494 Aquilegia oxysepala HOM05D002960 ORTHO05D003632 3.8e-08 61.6 60 48.3
CiPaw.03G199900 Carya illinoinensis HOM05D002960 ORTHO05D003632 3.8e-08 61.6 60 48.3
Haze_05396 Corylus avellana HOM05D002960 ORTHO05D003632 3.8e-08 61.6 60 46.7
PSO266G0049 Papaver somniferum HOM05D002960 ORTHO05D003632 3.8e-08 61.6 60 48.3
PSO478G2229 Papaver somniferum HOM05D002960 ORTHO05D003632 3.8e-08 61.6 60 48.3
Potri.017G148800 Populus trichocarpa HOM05D002960 ORTHO05D003632 3.8e-08 61.6 60 51.7
CSS0012044 Camellia sinensis var. sinensis HOM05D002960 ORTHO05D003632 5.0e-08 61.2 60 50.0
Gohir.A04G065342 Gossypium hirsutum HOM05D002960 ORTHO05D003632 5.0e-08 61.2 60 51.7
Phvul.009G223000 Phaseolus vulgaris HOM05D002960 ORTHO05D003632 5.0e-08 61.2 59 47.5
TAR627G0210 Trochodendron aralioides HOM05D002960 ORTHO05D003632 5.0e-08 61.2 60 48.3
VMungo1309G1262 Vigna mungo HOM05D002960 ORTHO05D003632 5.0e-08 61.2 59 47.5
Atru.chr8.1225 Acer truncatum HOM05D002960 ORTHO05D003632 6.5e-08 60.8 60 51.7
CANSAT11G1379 Cannabis sativa HOM05D002960 ORTHO05D003632 6.5e-08 60.8 58 50.0
Cfa019431 Carpinus fangiana HOM05D002960 ORTHO05D003632 6.5e-08 60.8 60 46.7
DCAR_020274 Daucus carota HOM05D002960 ORTHO05D003632 6.5e-08 60.8 60 48.3
Glyma.15G183400 Glycine max HOM05D002960 ORTHO05D003632 6.5e-08 60.8 59 47.5
THA.LOC104811944 Tarenaya hassleriana HOM05D002960 ORTHO05D003632 6.5e-08 60.8 60 48.3
TPR.G20789 Trifolium pratense HOM05D002960 ORTHO05D003632 6.5e-08 60.8 58 48.3
vmacro14679 Vaccinium macrocarpon HOM05D002960 ORTHO05D003632 6.5e-08 60.8 60 46.7
Actinidia03141 Actinidia chinensis HOM05D002960 ORTHO05D003632 8.5e-08 60.5 59 49.2
Actinidia08427 Actinidia chinensis HOM05D002960 ORTHO05D003632 8.5e-08 60.5 60 50.0
Duzib106G0653 Durio zibethinus HOM05D002960 ORTHO05D003632 8.5e-08 60.5 60 50.0
Lj1A1006G38 Lonicera japonica HOM05D002960 ORTHO05D003632 8.5e-08 60.5 60 50.0
Eucgr.A00001 Eucalyptus grandis HOM05D002960 ORTHO05D003632 1.1e-07 60.1 60 48.3
FAN06G3309 Fragaria x ananassa HOM05D002960 ORTHO05D003632 1.1e-07 60.1 60 46.7
HanXRQChr07g0202321 Helianthus annuus HOM05D002960 ORTHO05D003632 1.1e-07 60.1 60 48.3
Rhsim09G0201000 Rhododendron simsii HOM05D002960 ORTHO05D003632 1.1e-07 60.1 60 46.7
Ca_02287_v3 Cicer arietinum L. HOM05D002960 ORTHO05D003632 1.4e-07 59.7 58 44.8
Gohir.D12G255700 Gossypium hirsutum HOM05D002960 ORTHO05D003632 1.4e-07 59.7 60 48.3
Oeu027867.1 Olea europaea HOM05D002960 ORTHO05D003632 1.4e-07 59.7 60 45.0
Psat1g137760 Pisum sativum HOM05D002960 ORTHO05D003632 1.4e-07 59.7 59 45.8
Sc13g0009270 Simmondsia chinensis HOM05D002960 ORTHO05D003632 1.4e-07 59.7 59 47.5
Dinv31654 Davidia involucrata HOM05D002960 ORTHO05D003632 1.9e-07 59.3 60 48.3
ECA232G0210 Erigeron canadensis HOM05D002960 ORTHO05D003632 1.9e-07 59.3 60 46.7
Hma1.2p1_0084F.1_g043400 Hydrangea macrophylla HOM05D002960 ORTHO05D003632 1.9e-07 59.3 60 50.0
Lalb_Chr23g0276131 Lupinus albus HOM05D002960 ORTHO05D003632 1.9e-07 59.3 59 47.5
TAR636G2825 Trochodendron aralioides HOM05D002960 ORTHO05D003632 1.9e-07 59.3 60 46.7
Glyma.09G075400 Glycine max HOM05D002960 ORTHO05D003632 2.5e-07 58.9 59 45.8
Gorai.009G406200 Gossypium raimondii HOM05D002960 ORTHO05D003632 2.5e-07 58.9 60 48.3
Duzib205G1208 Durio zibethinus HOM05D002960 ORTHO05D003632 3.2e-07 58.5 60 48.3
COL.COLO4_29794 Corchorus olitorius HOM05D002960 ORTHO05D003632 4.2e-07 58.2 60 46.7
Dinv09615 Davidia involucrata HOM05D002960 ORTHO05D003632 4.2e-07 58.2 60 45.0
Potri.004G072200 Populus trichocarpa HOM05D002960 ORTHO05D003632 5.5e-07 57.8 60 48.3
QL07p039962 Quercus lobata HOM05D002960 ORTHO05D003632 5.5e-07 57.8 60 45.0
Sabra04G0047600 Salix brachista HOM05D002960 ORTHO05D003632 5.5e-07 57.8 60 48.3
SHI09095 Sapria himalayana HOM05D002960 ORTHO05D003632 5.5e-07 57.8 60 50.0
Hund11709 Selenicereus undatus HOM05D002960 ORTHO05D003632 5.5e-07 57.8 59 44.1
CDE04G1460 Ceratophyllum demersum HOM05D002960 ORTHO05D003632 7.2e-07 57.4 60 45.0
Lsat_1_v5_gn_9_56821 Lactuca sativa HOM05D002960 ORTHO05D003632 7.2e-07 57.4 63 46.0
Lalb_Chr08g0232801 Lupinus albus HOM05D002960 ORTHO05D003632 7.2e-07 57.4 59 44.1
Gohir.D04G102900 Gossypium hirsutum HOM05D002960 ORTHO05D003632 9.3e-07 57.0 60 46.7
Medtr2g044580 Medicago truncatula HOM05D002960 ORTHO05D003632 9.3e-07 57.0 58 46.6
CDE02G1775 Ceratophyllum demersum HOM05D002960 ORTHO05D003632 1.2e-06 56.6 60 45.0
Cc02_g02260 Coffea canephora HOM05D002960 ORTHO05D003632 1.2e-06 56.6 60 43.3
BraSC35t45991Z Brassica rapa HOM05D013583 ORTHO05D016059 1.6e-06 56.2 24 91.7
AUR62021103 Chenopodium quinoa HOM05D002960 ORTHO05D003632 2.1e-06 55.8 59 45.8
AUR62031437 Chenopodium quinoa HOM05D002960 ORTHO05D003632 2.1e-06 55.8 59 45.8
MSTRG.5818 Avicennia marina HOM05D002960 ORTHO05D003632 2.7e-06 55.5 60 45.0
EL10Ac3g05404 Beta vulgaris HOM05D002960 ORTHO05D003632 2.7e-06 55.5 59 44.1
Manes.14G021200 Manihot esculenta HOM05D002960 ORTHO05D003632 2.7e-06 55.5 60 45.0
Peaxi162Scf00444g00247 Petunia axillaris HOM05D002960 ORTHO05D003632 2.7e-06 55.5 58 43.1
HPP92_021751 Vanilla planifolia HOM05D002960 ORTHO05D003632 2.7e-06 55.5 59 47.5
Rhsim03G0078900 Rhododendron simsii HOM05D002960 ORTHO05D003632 4.6e-06 54.7 60 43.3
SEGI_20479 Sequoiadendron giganteum HOM05D002960 ORTHO05D003632 4.6e-06 54.7 60 41.7
Lalb_Chr01g0018271 Lupinus albus HOM05D002960 ORTHO05D003632 6.1e-06 54.3 64 40.6
Thecc.05G083700 Theobroma cacao HOM05D002960 ORTHO05D003632 6.1e-06 54.3 60 45.0
unitig_744.g24693 Utricularia gibba HOM05D002960 ORTHO05D003632 6.1e-06 54.3 60 43.3
ATR0564G109 Amborella trichopoda HOM05D002960 ORTHO05D003632 7.9e-06 53.9 59 40.7


User provided reference genes

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