Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g05003 Brassica carinata HOM05D029084 ORTHO05D027395 1.8e-117 426.0 226 100.0
BolC3t15471H Brassica oleracea HOM05D029084 ORTHO05D027395 6.1e-110 401.0 216 98.6
C03p31230 Brassica napus HOM05D029084 ORTHO05D027395 5.3e-77 291.6 216 75.5
Sp4g12240 Schrenkiella parvula HOM05D001956 ORTHO05D002035 1.6e-73 280.0 216 75.5
Thhalv10016221m.g Eutrema salsugineum HOM05D001956 ORTHO05D002035 1.4e-66 256.9 221 71.0
C04p21330 Brassica napus HOM05D001956 ORTHO05D002035 3.0e-64 249.2 217 71.4
BolC4t23661H Brassica oleracea HOM05D001956 ORTHO05D002035 3.0e-64 249.2 217 71.4
A05p15880 Brassica napus HOM05D001956 ORTHO05D002035 5.6e-63 245.0 217 70.0
BraA05t20501Z Brassica rapa HOM05D001956 ORTHO05D002035 5.6e-63 245.0 217 70.0
AL4G24210 Arabidopsis lyrata HOM05D001956 ORTHO05D002035 7.4e-63 244.6 216 68.1
AT2G29510 Arabidopsis thaliana HOM05D001956 ORTHO05D002035 2.8e-62 242.7 207 69.6
CARHR122840 Cardamine hirsuta HOM05D001956 ORTHO05D002035 2.0e-60 236.5 217 67.7
Carub.0004s1056 Capsella rubella HOM05D001956 ORTHO05D002035 1.5e-55 220.3 211 64.9
Aa31LG5G6950 Aethionema arabicum HOM05D001956 ORTHO05D002035 9.6e-55 217.6 223 60.5
THA.LOC104800710 Tarenaya hassleriana HOM05D001956 ORTHO05D002035 1.6e-49 200.3 221 57.0
BcaB02g10258 Brassica carinata HOM05D001956 ORTHO05D002035 3.0e-48 196.1 219 60.3
Atru.chr3.4048 Acer truncatum HOM05D001956 ORTHO05D002035 8.8e-16 88.2 218 35.3
Duzib168G1880 Durio zibethinus HOM05D001956 ORTHO05D002035 1.4e-13 80.9 167 38.3
RcHm_v2.0_Chr5g0067231 Rosa chinensis HOM05D001956 ORTHO05D002035 3.1e-13 79.7 170 37.1
MD11G1084800 Malus domestica HOM05D001956 ORTHO05D002035 5.4e-13 79.0 152 36.2
Thecc.09G309700 Theobroma cacao HOM05D001956 ORTHO05D002035 7.0e-13 78.6 155 38.1
FAN21G0046 Fragaria x ananassa HOM05D001956 ORTHO05D002035 1.2e-12 77.8 219 31.1
MD03G1081200 Malus domestica HOM05D001956 ORTHO05D002035 1.2e-12 77.8 153 38.6
QL01p028873 Quercus lobata HOM05D001956 ORTHO05D002035 2.0e-12 77.0 141 34.8
FAN16G2274 Fragaria x ananassa HOM05D001956 ORTHO05D002035 4.5e-12 75.9 186 34.4
FAN11G2245 Fragaria x ananassa HOM05D001956 ORTHO05D002035 5.9e-12 75.5 137 38.7
Gohir.D05G092400 Gossypium hirsutum HOM05D001956 ORTHO05D002035 7.7e-12 75.1 166 37.3
Haze_24224 Corylus avellana HOM05D001956 ORTHO05D002035 1.0e-11 74.7 157 34.4
FvH4_3g37380 Fragaria vesca HOM05D001956 ORTHO05D002035 1.0e-11 74.7 137 38.7
Gohir.D03G120200 Gossypium hirsutum HOM05D001956 ORTHO05D002035 1.0e-11 74.7 167 35.9
CiPaw.14G063200 Carya illinoinensis HOM05D001956 ORTHO05D002035 2.2e-11 73.6 204 32.4
Gohir.A05G091500 Gossypium hirsutum HOM05D001956 ORTHO05D002035 2.2e-11 73.6 166 38.0
Gorai.009G094900 Gossypium raimondii HOM05D001956 ORTHO05D002035 2.2e-11 73.6 166 36.7
Duzib170G1069 Durio zibethinus HOM05D001956 ORTHO05D002035 3.8e-11 72.8 167 35.9
Cfa011622 Carpinus fangiana HOM05D001956 ORTHO05D002035 5.0e-11 72.4 157 33.8
Ciclev10027780m.g Citrus clementina HOM05D001956 ORTHO05D002035 5.0e-11 72.4 200 31.5
Manes.01G166800 Manihot esculenta HOM05D001956 ORTHO05D002035 5.0e-11 72.4 148 37.8
Cpa.g.sc112.98 Carica papaya HOM05D001956 ORTHO05D002035 6.5e-11 72.0 166 36.1
Prupe.6G065800 Prunus persica HOM05D001956 ORTHO05D002035 1.1e-10 71.2 105 41.0
COL.COLO4_19066 Corchorus olitorius HOM05D001956 ORTHO05D002803 1.5e-10 70.9 149 36.9
Gorai.003G126700 Gossypium raimondii HOM05D001956 ORTHO05D002035 1.9e-10 70.5 167 35.3
Ca_20603_v3 Cicer arietinum L. HOM05D001956 ORTHO05D002035 2.5e-10 70.1 141 36.2
Eucgr.J01956 Eucalyptus grandis HOM05D001956 ORTHO05D002035 4.2e-10 69.3 108 40.7
Potri.001G246200 Populus trichocarpa HOM05D001956 ORTHO05D002035 4.2e-10 69.3 162 33.3
Potri.009G039300 Populus trichocarpa HOM05D001956 ORTHO05D002035 9.4e-10 68.2 161 34.8
Sabra09G0028000 Salix brachista HOM05D001956 ORTHO05D002035 1.2e-09 67.8 168 33.9
Manes.02G124400 Manihot esculenta HOM05D001956 ORTHO05D002035 2.1e-09 67.0 161 34.2
Gohir.A03G047000 Gossypium hirsutum HOM05D001956 ORTHO05D002035 3.6e-09 66.2 166 34.9
Phvul.L008743 Phaseolus vulgaris HOM05D001956 ORTHO05D002035 6.1e-09 65.5 133 37.6
EL10Ac7g16093 Beta vulgaris HOM05D001956 ORTHO05D002035 8.0e-09 65.1 120 37.5
arahy.Tifrunner.gnm1.ann1.P5QYP7 Arachis hypogaea HOM05D001956 ORTHO05D002035 1.0e-08 64.7 91 42.9
arahy.Tifrunner.gnm1.ann1.WADY44 Arachis hypogaea HOM05D001956 ORTHO05D002035 1.0e-08 64.7 91 42.9
VMungo1080G1899 Vigna mungo HOM05D001956 ORTHO05D002035 1.8e-08 63.9 133 36.1
C09p51310 Brassica napus HOM05D001956 ORTHO05D002035 2.3e-08 63.5 270 28.1
Sp6g20720 Schrenkiella parvula HOM05D001956 ORTHO05D002035 2.3e-08 63.5 214 32.7
ClCG02G019830 Citrullus lanatus HOM05D001956 ORTHO05D002035 3.0e-08 63.2 153 33.3
Medtr4g064997 Medicago truncatula HOM05D001956 ORTHO05D002035 3.0e-08 63.2 140 35.0
Ca_01299_v3 Cicer arietinum L. HOM05D001956 ORTHO05D002035 4.0e-08 62.8 138 34.8
Glyma.13G339600 Glycine max HOM05D001956 ORTHO05D002035 4.0e-08 62.8 92 44.6
Sabra16G0149400 Salix brachista HOM05D001956 ORTHO05D002035 5.2e-08 62.4 162 31.5
Lj2A1072T118 Lonicera japonica HOM05D001956 ORTHO05D002035 6.8e-08 62.0 135 35.6
Aa31LG1G11720 Aethionema arabicum HOM05D001956 ORTHO05D002035 8.8e-08 61.6 198 33.8
Glyma.15G034800 Glycine max HOM05D001956 ORTHO05D002035 8.8e-08 61.6 142 35.2
Medtr2g097850 Medicago truncatula HOM05D001956 ORTHO05D002035 8.8e-08 61.6 137 34.3
PGR119G1807 Punica granatum HOM05D001956 ORTHO05D002035 8.8e-08 61.6 146 35.6
DCAR_010433 Daucus carota HOM05D001956 ORTHO05D002035 1.2e-07 61.2 109 37.6
TWI31G0404 Tripterygium wilfordii HOM05D001956 ORTHO05D002035 1.2e-07 61.2 145 35.2
AUR62001719 Chenopodium quinoa HOM05D001956 ORTHO05D002035 2.0e-07 60.5 230 30.9
Hund18877 Selenicereus undatus HOM05D001956 ORTHO05D002035 2.0e-07 60.5 172 32.0
Lalb_Chr01g0003421 Lupinus albus HOM05D001956 ORTHO05D002035 2.6e-07 60.1 189 30.7
Sabra06G0071100 Salix brachista HOM05D001956 ORTHO05D002035 2.6e-07 60.1 106 34.9
TWI79G1635 Tripterygium wilfordii HOM05D001956 ORTHO05D002035 2.6e-07 60.1 200 33.0
AUR62020057 Chenopodium quinoa HOM05D001956 ORTHO05D002035 3.4e-07 59.7 227 29.5
GSVIVG01034048001 Vitis vinifera HOM05D001956 ORTHO05D002035 3.4e-07 59.7 93 37.6
Lj3g0013888 Lotus japonicus HOM05D001956 ORTHO05D002035 4.4e-07 59.3 124 37.9
MD04G1141700 Malus domestica HOM05D001956 ORTHO05D002035 4.4e-07 59.3 118 33.9
Duzib150G1633 Durio zibethinus HOM05D001956 ORTHO05D002035 5.7e-07 58.9 136 36.0
TPR.G6887 Trifolium pratense HOM05D001956 ORTHO05D002035 5.7e-07 58.9 140 34.3
Lalb_Chr19g0138081 Lupinus albus HOM05D001956 ORTHO05D002035 7.5e-07 58.5 127 36.2
BcaB05g22469 Brassica carinata HOM05D001956 ORTHO05D002035 1.3e-06 57.8 245 29.0
FvH4_6g12500 Fragaria vesca HOM05D001956 ORTHO05D002035 1.3e-06 57.8 105 35.2
FAN14G3305 Fragaria x ananassa HOM05D001956 ORTHO05D002035 1.3e-06 57.8 105 35.2
Hma1.2p1_0671F.1_g200680 Hydrangea macrophylla HOM05D001956 ORTHO05D002035 1.3e-06 57.8 109 33.9
Psat5g285880 Pisum sativum HOM05D001956 ORTHO05D002035 1.3e-06 57.8 123 37.4
A10p16280 Brassica napus HOM05D001956 ORTHO05D002695 1.7e-06 57.4 217 32.3
BraA10t43710Z Brassica rapa HOM05D001956 ORTHO05D002035 1.7e-06 57.4 217 32.3
TAR633G1918 Trochodendron aralioides HOM05D001956 ORTHO05D002035 1.7e-06 57.4 123 33.3
arahy.Tifrunner.gnm1.ann1.H44KCV Arachis hypogaea HOM05D001956 ORTHO05D002035 2.2e-06 57.0 138 34.8
BolC9t57990H Brassica oleracea HOM05D001956 ORTHO05D002035 2.2e-06 57.0 196 32.7
Carub.0008s1967 Capsella rubella HOM05D001956 ORTHO05D002035 2.2e-06 57.0 192 29.2
Duzib093G1868 Durio zibethinus HOM05D001956 ORTHO05D002035 2.2e-06 57.0 126 34.9
FAN09G4161 Fragaria x ananassa HOM05D001956 ORTHO05D002035 2.2e-06 57.0 108 33.3
SGA_v2.0_scaffold85G26806 Striga asiatica HOM05D001956 ORTHO05D002035 2.2e-06 57.0 134 31.3
CiPaw.13G084600 Carya illinoinensis HOM05D001956 ORTHO05D002035 2.8e-06 56.6 138 29.7
Dinv17071 Davidia involucrata HOM05D001956 ORTHO05D002035 2.8e-06 56.6 150 35.3
Dinv43015 Davidia involucrata HOM05D001956 ORTHO05D002035 2.8e-06 56.6 150 35.3
Dinv43082 Davidia involucrata HOM05D001956 ORTHO05D002035 2.8e-06 56.6 150 35.3
Manes.09G099400 Manihot esculenta HOM05D001956 ORTHO05D002035 2.8e-06 56.6 132 37.9
PGR004G2380 Punica granatum HOM05D001956 ORTHO05D002035 2.8e-06 56.6 96 37.5
Lalb_Chr14g0372081 Lupinus albus HOM05D001956 ORTHO05D002035 3.7e-06 56.2 133 33.8
FAN05G2036 Fragaria x ananassa HOM05D001956 ORTHO05D002035 4.9e-06 55.8 112 33.9
Oeu003409.1 Olea europaea HOM05D001956 ORTHO05D002035 4.9e-06 55.8 89 39.3
Hma1.2p1_0543F.1_g175370 Hydrangea macrophylla HOM05D001956 ORTHO05D002035 6.3e-06 55.5 159 31.4
QL07p027801 Quercus lobata HOM05D001956 ORTHO05D002035 8.3e-06 55.1 122 33.6


User provided reference genes

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