Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 1.6e-119 433.0 243 100.0
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 7.3e-109 397.5 244 87.7
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 3.6e-108 395.2 245 86.9
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 4.4e-106 388.3 244 86.9
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 2.1e-103 379.4 243 85.2
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 2.7e-103 379.0 244 82.4
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 6.9e-99 364.4 243 79.8
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 6.9e-99 364.4 244 80.7
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 6.9e-99 364.4 188 99.5
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 6.9e-99 364.4 244 80.7
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 9.0e-99 364.0 244 80.3
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 1.5e-98 363.2 244 79.9
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 2.6e-98 362.5 245 80.0
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 2.2e-89 332.8 244 75.4
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 6.4e-89 331.3 244 74.2
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.0e-86 323.9 245 73.1
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 1.5e-85 320.1 244 73.0
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 1.6e-84 316.6 164 98.8
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 3.7e-84 315.5 210 78.1
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 4.8e-68 261.9 204 64.7
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 8.2e-68 261.2 195 68.2
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 1.8e-67 260.0 194 68.0
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 9.0e-67 257.7 200 66.0
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.7e-65 253.4 205 64.9
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 5.0e-65 251.9 197 66.0
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 6.5e-65 251.5 212 60.8
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 1.1e-64 250.8 195 65.6
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 1.9e-64 250.0 199 66.8
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 2.5e-64 249.6 188 68.1
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 2.5e-64 249.6 208 61.5
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 3.2e-64 249.2 195 66.7
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 4.2e-64 248.8 192 67.2
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 1.2e-63 247.3 200 63.0
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 1.2e-63 247.3 192 66.1
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 1.6e-63 246.9 224 61.2
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 1.6e-63 246.9 206 62.6
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.1e-63 246.5 205 63.4
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 4.6e-63 245.4 204 62.3
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 4.6e-63 245.4 192 66.7
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 6.1e-63 245.0 213 61.0
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 6.1e-63 245.0 187 68.4
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 1.0e-62 244.2 192 67.7
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 1.8e-62 243.4 194 64.9
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 1.8e-62 243.4 196 63.3
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 3.0e-62 242.7 209 60.8
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 3.9e-62 242.3 195 64.6
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 6.7e-62 241.5 188 66.0
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 8.8e-62 241.1 212 61.8
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 1.5e-61 240.4 183 67.2
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 1.5e-61 240.4 188 65.4
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 2.0e-61 240.0 196 64.3
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 2.5e-61 239.6 207 60.9
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 4.3e-61 238.8 198 64.6
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 9.7e-61 237.7 206 59.7
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 9.7e-61 237.7 186 65.1
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 1.3e-60 237.3 212 59.9
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 1.7e-60 236.9 188 64.9
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 1.7e-60 236.9 191 62.8
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 2.2e-60 236.5 210 61.0
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 2.2e-60 236.5 165 70.9
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 2.2e-60 236.5 196 64.3
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 3.7e-60 235.7 187 63.6
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 8.2e-60 234.6 200 61.5
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 1.1e-59 234.2 199 61.8
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 2.4e-59 233.0 200 60.0
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 3.1e-59 232.6 200 59.0
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 3.1e-59 232.6 207 60.9
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 3.1e-59 232.6 206 60.2
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 4.1e-59 232.3 200 61.5
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 5.3e-59 231.9 191 62.8
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 6.9e-59 231.5 206 61.7
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 9.1e-59 231.1 158 70.3
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-58 230.7 200 61.0
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 1.2e-58 230.7 206 58.3
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 1.2e-58 230.7 198 61.1
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.5e-58 230.3 203 61.1
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 1.5e-58 230.3 215 60.0
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.5e-58 230.3 203 61.1
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 3.4e-58 229.2 167 70.1
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 3.4e-58 229.2 193 63.2
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.3e-57 227.3 201 62.2
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 1.7e-57 226.9 207 60.9
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 2.2e-57 226.5 162 68.5
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.9e-57 226.1 205 59.5
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 2.9e-57 226.1 227 53.3
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.9e-56 223.4 204 58.3
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 7.2e-56 221.5 186 61.3
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 9.4e-56 221.1 226 54.4
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 9.4e-56 221.1 158 67.1
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 1.2e-55 220.7 210 55.2
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 6.1e-55 218.4 160 65.6
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 8.8e-54 214.5 198 59.6
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 4.4e-53 212.2 194 60.8
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 4.4e-53 212.2 162 64.2
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 5.7e-53 211.8 161 64.6
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 7.4e-53 211.5 166 65.7
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 1.5e-50 203.8 180 58.9
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 1.5e-48 197.2 141 70.9
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 8.0e-47 191.4 157 59.9
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 2.3e-46 189.9 155 60.0
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-45 186.8 200 52.5
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.8e-44 183.0 156 59.6
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 4.5e-42 175.6 170 54.1
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 1.1e-40 171.0 192 51.6
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 1.9e-40 170.2 184 50.5
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 3.2e-40 169.5 160 56.9
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 4.7e-39 165.6 156 57.1
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.0e-33 147.9 195 45.6
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 4.2e-32 142.5 195 44.1
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 1.6e-31 140.6 174 46.0
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 3.6e-31 139.4 153 47.7
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 1.8e-30 137.1 92 71.7
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 2.6e-29 133.3 169 43.8
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 9.1e-27 124.8 82 72.0
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.8e-25 119.4 168 40.5
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.9e-24 117.1 82 68.3
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.3e-24 116.3 134 51.5
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 4.2e-24 115.9 116 54.3
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 5.5e-24 115.5 90 62.2
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-23 113.6 122 49.2
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 2.1e-23 113.6 118 51.7
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.1e-23 113.6 106 62.3
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 6.8e-22 108.6 118 50.0
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 4.1e-19 99.4 69 66.7
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 3.6e-15 86.3 124 41.9
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 8.0e-15 85.1 168 35.7
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 1.9e-11 73.9 97 50.5
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 2.4e-11 73.6 107 41.1
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 2.0e-10 70.5 97 43.3
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 8.6e-09 65.1 93 44.1
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 5.6e-08 62.4 221 27.1
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 9.5e-08 61.6 147 29.3
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 1.6e-07 60.8 161 29.8
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 2.8e-07 60.1 216 25.9
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 3.6e-07 59.7 149 28.9
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 3.6e-07 59.7 85 48.2
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 4.7e-07 59.3 127 30.7
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 6.2e-07 58.9 151 29.8
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 1.1e-06 58.2 177 27.1
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 1.4e-06 57.8 121 28.1
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 1.4e-06 57.8 121 28.1
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 1.4e-06 57.8 156 27.6
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 1.4e-06 57.8 215 26.0
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 1.8e-06 57.4 203 26.1
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 3.1e-06 56.6 182 27.5
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 3.1e-06 56.6 114 30.7
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 3.1e-06 56.6 114 30.7
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 3.1e-06 56.6 227 25.6
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 3.1e-06 56.6 147 27.9
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 3.1e-06 56.6 224 25.4
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 4.0e-06 56.2 177 26.6
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 4.0e-06 56.2 182 27.5
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 4.0e-06 56.2 121 28.1
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 5.2e-06 55.8 120 30.0
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 5.2e-06 55.8 150 26.0
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 5.2e-06 55.8 221 25.3
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 5.2e-06 55.8 221 25.3
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 6.8e-06 55.5 135 27.4
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 6.8e-06 55.5 167 24.0
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 6.8e-06 55.5 167 24.0
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 6.8e-06 55.5 167 24.0
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 6.8e-06 55.5 167 24.0
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 6.8e-06 55.5 118 26.3
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 6.8e-06 55.5 136 29.4
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 6.8e-06 55.5 120 28.3
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 8.9e-06 55.1 150 24.7
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 8.9e-06 55.1 127 26.8


User provided reference genes

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