Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04959 Brassica carinata HOM05D007495 ORTHO05D009552 1.4e-93 346.3 171 100.0
BolC3t15512H Brassica oleracea HOM05D007495 ORTHO05D009552 1.4e-93 346.3 171 100.0
C03p31690 Brassica napus HOM05D007495 ORTHO05D009552 1.3e-91 339.7 171 98.8
A03p26400 Brassica napus HOM05D007495 ORTHO05D009552 5.3e-90 334.3 171 95.9
BraA03t11855Z Brassica rapa HOM05D007495 ORTHO05D009552 5.3e-90 334.3 171 95.9
BcaB01g03091 Brassica carinata HOM05D007495 ORTHO05D009552 3.7e-83 311.6 169 92.9
Sp4g10910 Schrenkiella parvula HOM05D007495 ORTHO05D009552 9.2e-74 280.4 165 85.5
Carub.0004s0888 Capsella rubella HOM05D007495 ORTHO05D009552 2.5e-71 272.3 171 80.1
Thhalv10017338m.g Eutrema salsugineum HOM05D007495 ORTHO05D009552 1.6e-70 269.6 162 84.0
AL4G22050 Arabidopsis lyrata HOM05D007495 ORTHO05D009552 3.6e-70 268.5 169 78.7
AT2G28105 Arabidopsis thaliana HOM05D007495 ORTHO05D009552 4.7e-70 268.1 169 79.9
CARHR120870 Cardamine hirsuta HOM05D007495 ORTHO05D009552 3.2e-66 255.4 169 76.3
THA.LOC104800583 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 2.2e-51 206.1 151 66.9
THA.LOC104808393 Tarenaya hassleriana HOM05D007495 ORTHO05D009552 4.6e-49 198.4 150 66.7
Aa31LG5G8040 Aethionema arabicum HOM05D002446 ORTHO05D002941 1.1e-45 187.2 137 69.3
GSVIVG01031491001 Vitis vinifera HOM05D007495 ORTHO05D009552 7.1e-42 174.5 159 57.9
CiPaw.13G124600 Carya illinoinensis HOM05D007495 ORTHO05D009552 9.3e-42 174.1 174 54.0
Prupe.6G109500 Prunus persica HOM05D007495 ORTHO05D009552 9.3e-42 174.1 161 56.5
TAR633G0300 Trochodendron aralioides HOM05D007495 ORTHO05D009552 9.3e-42 174.1 161 57.8
MD11G1146400 Malus domestica HOM05D007495 ORTHO05D009552 1.7e-40 169.9 168 54.8
Hma1.2p1_0051F.1_g029310 Hydrangea macrophylla HOM05D007495 ORTHO05D009552 3.9e-40 168.7 167 53.3
CsaV3_6G014270 Cucumis sativus L. HOM05D007495 ORTHO05D009552 5.1e-40 168.3 154 54.5
ClCG02G021490 Citrullus lanatus HOM05D007495 ORTHO05D009552 1.1e-39 167.2 161 54.7
Manes.04G014200 Manihot esculenta HOM05D007495 ORTHO05D009552 1.1e-39 167.2 163 51.5
Rhsim13G0099600 Rhododendron simsii HOM05D007495 ORTHO05D009552 1.5e-39 166.8 165 53.9
MELO3C026944.2 Cucumis melo HOM05D007495 ORTHO05D009552 1.9e-39 166.4 154 53.9
Atru.chr3.3537 Acer truncatum HOM05D007495 ORTHO05D009552 2.5e-39 166.0 160 53.8
Nn6g35262 Nelumbo nucifera HOM05D007495 ORTHO05D009552 3.3e-39 165.6 158 55.7
QL01p015526 Quercus lobata HOM05D007495 ORTHO05D009552 3.3e-39 165.6 158 54.4
Potri.004G215300 Populus trichocarpa HOM05D007495 ORTHO05D009552 5.6e-39 164.9 163 52.1
Dinv34730 Davidia involucrata HOM05D007495 ORTHO05D009552 9.6e-39 164.1 164 53.7
Sabra04G0146300 Salix brachista HOM05D007495 ORTHO05D009552 1.3e-38 163.7 162 51.9
Cfa010302 Carpinus fangiana HOM05D007495 ORTHO05D009552 1.6e-38 163.3 154 56.5
Haze_23728 Corylus avellana HOM05D007495 ORTHO05D009552 2.8e-38 162.5 154 56.5
FAN25G1473 Fragaria x ananassa HOM05D007495 ORTHO05D009552 2.8e-38 162.5 167 50.3
Sed0010722 Sechium edule HOM05D007495 ORTHO05D009552 3.6e-38 162.2 165 50.9
Ciclev10029419m.g Citrus clementina HOM05D007495 ORTHO05D009552 6.2e-38 161.4 165 52.1
RcHm_v2.0_Chr5g0057451 Rosa chinensis HOM05D007495 ORTHO05D009552 8.1e-38 161.0 167 48.5
CSS0017583 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 3.1e-37 159.1 166 51.2
FAN21G3793 Fragaria x ananassa HOM05D007495 ORTHO05D009552 3.1e-37 159.1 161 50.3
Lalb_Chr24g0394861 Lupinus albus HOM05D007495 ORTHO05D009552 3.1e-37 159.1 150 53.3
Cc01_g10460 Coffea canephora HOM05D007495 ORTHO05D009552 9.0e-37 157.5 168 49.4
DCAR_018778 Daucus carota HOM05D007495 ORTHO05D009552 2.0e-36 156.4 161 50.3
Eucgr.B03939 Eucalyptus grandis HOM05D007495 ORTHO05D009552 4.4e-36 155.2 160 50.6
Oeu018477.1 Olea europaea HOM05D007495 ORTHO05D009552 9.9e-36 154.1 152 54.6
SGA_v2.0_scaffold436G51603 Striga asiatica HOM05D007495 ORTHO05D009552 2.9e-35 152.5 159 52.2
Migut.N02567 Erythranthe guttata HOM05D007495 ORTHO05D009552 3.8e-35 152.1 163 52.8
SalBow1G5708 Salvia bowleyana HOM05D007495 ORTHO05D009552 3.8e-35 152.1 158 50.6
Actinidia24137 Actinidia chinensis HOM05D007495 ORTHO05D009552 4.9e-35 151.8 162 50.0
arahy.Tifrunner.gnm1.ann1.KUS9HA Arachis hypogaea HOM05D007495 ORTHO05D009552 6.4e-35 151.4 147 53.1
Hund08367 Selenicereus undatus HOM05D007495 ORTHO05D009552 6.4e-35 151.4 159 48.4
SalBow3G3637 Salvia bowleyana HOM05D007495 ORTHO05D009552 8.4e-35 151.0 156 53.2
arahy.Tifrunner.gnm1.ann1.F5YJ3L Arachis hypogaea HOM05D007495 ORTHO05D009552 1.1e-34 150.6 150 54.0
Lj2C1012G12 Lonicera japonica HOM05D007495 ORTHO05D009552 1.1e-34 150.6 155 51.0
MSTRG.17767 Avicennia marina HOM05D007495 ORTHO05D009552 1.4e-34 150.2 152 53.3
HanXRQChr09g0259381 Helianthus annuus HOM05D007495 ORTHO05D009552 1.4e-34 150.2 156 48.1
VMungo1080G0225 Vigna mungo HOM05D007495 ORTHO05D009552 1.4e-34 150.2 153 50.3
Nitab4.5_0000329g0280 Nicotiana tabacum HOM05D007495 ORTHO05D009552 1.9e-34 149.8 158 49.4
AUR62014942 Chenopodium quinoa HOM05D007495 ORTHO05D009552 3.2e-34 149.1 149 54.4
Phvul.005G131100 Phaseolus vulgaris HOM05D007495 ORTHO05D009552 3.2e-34 149.1 154 52.6
vmacro03264 Vaccinium macrocarpon HOM05D007495 ORTHO05D009552 3.2e-34 149.1 200 44.0
Ah.01g003160 Amaranthus hybridus HOM05D007495 ORTHO05D009552 5.4e-34 148.3 143 54.5
Nitab4.5_0005092g0010 Nicotiana tabacum HOM05D007495 ORTHO05D009552 7.1e-34 147.9 165 48.5
Peaxi162Scf00892g00019 Petunia axillaris HOM05D007495 ORTHO05D009552 1.2e-33 147.1 150 53.3
Thecc.09G349500 Theobroma cacao HOM05D007495 ORTHO05D009552 1.2e-33 147.1 149 49.0
AUR62029199 Chenopodium quinoa HOM05D007495 ORTHO05D009552 1.6e-33 146.7 149 53.0
Glyma.13G322700 Glycine max HOM05D007495 ORTHO05D009552 3.9e-32 142.1 146 50.7
PGR102G0900 Punica granatum HOM05D007495 ORTHO05D009552 3.9e-32 142.1 154 48.7
Aqoxy1G01135 Aquilegia oxysepala HOM05D007495 ORTHO05D009552 6.6e-32 141.4 162 45.7
Sopen01g017570 Solanum pennellii HOM05D007495 ORTHO05D009552 6.6e-32 141.4 163 47.9
PGSC0003DMG400000407 Solanum tuberosum HOM05D007495 ORTHO05D009552 2.5e-31 139.4 164 48.2
MBI11_g41957_MAGBIO Magnolia biondii HOM05D007495 ORTHO05D009552 4.3e-31 138.7 162 46.9
EL10Ac9g22596 Beta vulgaris HOM05D007495 ORTHO05D009552 5.6e-31 138.3 192 43.8
Lsat_1_v5_gn_2_96660 Lactuca sativa HOM05D007495 ORTHO05D009552 7.3e-31 137.9 165 45.5
Duzib147G1262 Durio zibethinus HOM05D007495 ORTHO05D009552 9.6e-31 137.5 154 45.5
Sopen11g025970 Solanum pennellii HOM05D007495 ORTHO05D009552 9.6e-31 137.5 159 47.2
PGSC0003DMG400010906 Solanum tuberosum HOM05D007495 ORTHO05D009552 9.6e-31 137.5 165 46.7
Solyc11g066240.3 Solanum lycopersicum HOM05D007495 ORTHO05D009552 1.3e-30 137.1 167 45.5
HPP92_026750 Vanilla planifolia HOM05D007495 ORTHO05D009552 2.8e-30 136.0 144 50.0
PSO210G3489 Papaver somniferum HOM05D007495 ORTHO05D009552 1.4e-29 133.7 157 45.9
ATR1132G058 Amborella trichopoda HOM05D007495 ORTHO05D009552 9.0e-29 131.0 150 44.7
PSO210G2188 Papaver somniferum HOM05D007495 ORTHO05D009552 3.4e-28 129.0 162 43.8
Pp3c2_14140 Physcomitrium patens HOM05D007495 ORTHO05D009552 9.9e-28 127.5 155 43.2
Duzib168G1093 Durio zibethinus HOM05D007495 ORTHO05D009552 6.4e-27 124.8 147 44.9
Gorai.007G006500 Gossypium raimondii HOM05D007495 ORTHO05D009552 1.1e-26 124.0 157 41.4
FvH4_3g30910 Fragaria vesca HOM05D007495 ORTHO05D009552 1.9e-26 123.2 134 47.0
Gohir.A11G006200 Gossypium hirsutum HOM05D007495 ORTHO05D009552 2.7e-25 119.4 157 40.1
Gohir.D11G005300 Gossypium hirsutum HOM05D007495 ORTHO05D009552 1.3e-24 117.1 157 40.1
CAN.G546.21 Capsicum annuum HOM05D007495 ORTHO05D009552 1.4e-21 107.1 102 51.0
unitig_27.g25050 Utricularia gibba HOM05D007495 ORTHO05D009552 1.8e-21 106.7 104 51.9
CDE08G1192 Ceratophyllum demersum HOM05D007495 ORTHO05D009552 5.3e-21 105.1 139 40.3
CSS0034387 Camellia sinensis var. sinensis HOM05D007495 ORTHO05D009552 1.7e-19 100.1 119 45.4
AagrBONN_evm.TU.Sc2ySwM_228.3308 Anthoceros agrestis HOM05D007495 ORTHO05D009552 6.0e-17 91.7 130 37.7
Thecc.09G349300 Theobroma cacao HOM05D007495 ORTHO05D009552 3.0e-16 89.4 99 44.4
arahy.Tifrunner.gnm1.ann1.48A6J1 Arachis hypogaea HOM05D007495 ORTHO05D009552 5.1e-16 88.6 84 53.6
COL.COLO4_31833 Corchorus olitorius HOM05D000070 ORTHO05D005950 6.7e-16 88.2 104 42.3
SEGI_19183 Sequoiadendron giganteum HOM05D007495 ORTHO05D009552 1.3e-14 84.0 98 44.9
Solyc01g034070.2 Solanum lycopersicum HOM05D007495 ORTHO05D009552 2.1e-14 83.2 108 46.3
QL01p015485 Quercus lobata HOM05D007495 ORTHO05D000007 4.8e-14 82.0 85 54.1
TAR636G3027 Trochodendron aralioides HOM05D007495 ORTHO05D009552 1.4e-13 80.5 68 60.3
Actinidia07176 Actinidia chinensis HOM05D007495 ORTHO05D009552 3.0e-08 62.8 48 64.6
arahy.Tifrunner.gnm1.ann1.U22N6I Arachis hypogaea HOM05D001167 ORTHO05D014890 7.4e-07 58.2 36 72.2
arahy.Tifrunner.gnm1.ann1.SCS43X Arachis hypogaea HOM05D007495 ORTHO05D009552 1.6e-06 57.0 56 46.4


User provided reference genes

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