Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.0e-70 270.4 181 100.0
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.2e-68 263.5 182 77.5
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.2e-68 263.5 182 77.5
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.8e-67 259.6 182 76.4
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 4.4e-66 255.0 181 96.1
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 5.9e-63 244.6 181 93.9
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.1e-61 240.4 181 89.0
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 8.0e-60 234.2 178 89.3
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 4.0e-59 231.9 177 89.3
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.5e-58 229.9 180 90.0
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.5e-58 229.9 178 89.9
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 2.6e-58 229.2 181 89.0
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 2.3e-51 206.1 177 84.7
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 3.0e-51 205.7 175 84.0
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 2.6e-50 202.6 177 82.5
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 4.4e-50 201.8 183 80.3
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 5.7e-50 201.4 178 73.6
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 1.3e-49 200.3 176 60.8
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 1.7e-49 199.9 175 79.4
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 3.7e-49 198.7 175 78.9
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 3.7e-49 198.7 175 82.3
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 4.8e-49 198.4 175 79.4
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 6.3e-49 198.0 175 80.6
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 8.3e-49 197.6 175 81.1
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 1.8e-48 196.4 175 81.7
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 81.1
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 78.9
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.4e-48 196.1 175 78.9
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.1e-48 195.7 175 82.9
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 3.1e-48 195.7 175 78.9
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 4.1e-48 195.3 176 81.2
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 5.4e-48 194.9 175 79.4
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 9.1e-48 194.1 175 75.4
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.2e-47 193.7 175 80.6
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 2.7e-47 192.6 175 76.0
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 3.5e-47 192.2 175 77.7
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.5e-47 191.8 175 75.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 4.5e-47 191.8 175 75.4
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 5.9e-47 191.4 175 79.4
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 5.9e-47 191.4 175 79.4
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.3e-46 190.3 175 79.4
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 1.7e-46 189.9 175 79.4
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.7e-46 189.9 175 80.6
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 2.3e-46 189.5 178 77.0
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 3.8e-46 188.7 175 76.6
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 3.8e-46 188.7 175 78.3
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 5.0e-46 188.3 175 78.3
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.1e-45 187.2 175 80.6
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.5e-45 186.8 175 56.0
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 2.5e-45 186.0 175 77.1
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.5e-45 186.0 175 77.7
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 2.5e-45 186.0 175 77.7
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 3.3e-45 185.7 175 78.9
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 4.2e-45 185.3 175 76.6
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 4.2e-45 185.3 179 77.1
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 7.2e-45 184.5 178 70.8
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 1.2e-44 183.7 175 78.9
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 1.6e-44 183.3 175 76.6
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 1.6e-44 183.3 175 76.6
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 2.1e-44 183.0 175 77.7
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 2.1e-44 183.0 175 77.1
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 4.7e-44 181.8 175 76.6
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.1e-44 181.4 175 76.0
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 6.1e-44 181.4 175 77.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 1.8e-43 179.9 250 45.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 2.3e-43 179.5 175 76.6
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.3e-43 179.5 175 76.6
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 5.2e-43 178.3 175 77.7
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 6.8e-43 177.9 175 75.4
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 8.9e-43 177.6 178 74.7
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 8.9e-43 177.6 175 76.6
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 8.9e-43 177.6 175 76.0
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 1.2e-42 177.2 175 76.0
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 3.4e-42 175.6 175 75.4
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 5.7e-42 174.9 175 54.9
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 7.5e-42 174.5 175 76.0
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 1.7e-41 173.3 175 76.6
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.7e-41 173.3 175 75.4
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 4.9e-41 171.8 175 74.3
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 6.3e-41 171.4 181 72.9
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 1.1e-40 170.6 197 70.1
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.4e-40 170.2 198 48.0
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 4.1e-40 168.7 175 50.3
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 4.5e-39 165.2 157 79.6
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 1.3e-38 163.7 175 70.9
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 4.3e-37 158.7 175 48.6
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 5.6e-37 158.3 175 72.6
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 7.3e-37 157.9 206 60.2
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 2.8e-36 156.0 192 45.8
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 4.7e-36 155.2 175 70.3
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 4.0e-35 152.1 181 47.0
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 2.0e-34 149.8 175 45.1
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 5.8e-34 148.3 88 79.5
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 1.7e-33 146.7 85 80.0
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 6.4e-33 144.8 88 76.1
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 1.1e-32 144.1 175 49.1
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.1e-32 144.1 84 78.6
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 4.1e-32 142.1 177 62.1
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 1.2e-31 140.6 138 79.7
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 1.6e-31 140.2 140 70.0
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 2.7e-31 139.4 179 67.0
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 4.6e-31 138.7 89 73.0
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 6.0e-31 138.3 174 44.8
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.7e-30 136.7 89 71.9
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 6.6e-30 134.8 88 71.6
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.5e-29 133.7 175 45.7
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 1.9e-29 133.3 138 79.7
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 1.9e-29 133.3 171 45.0
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 9.5e-29 131.0 89 70.8
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 9.5e-29 131.0 89 70.8
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.8e-27 126.7 149 51.7
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 8.9e-27 124.4 141 75.9
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 4.4e-26 122.1 88 62.5
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 9.2e-24 114.4 124 70.2
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 1.9e-21 106.7 214 37.9
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 9.5e-21 104.4 120 48.3
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 1.2e-18 97.4 119 47.1
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 2.9e-17 92.8 167 37.7
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.5e-13 80.5 115 40.0
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 3.2e-08 62.8 99 41.4
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 4.2e-08 62.4 36 80.6
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.0e-07 58.5 36 75.0
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 2.3e-06 56.6 36 75.0
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 5.1e-06 55.5 36 69.4


User provided reference genes

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