Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 4.7e-103 377.9 189 100.0
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 9.6e-40 167.5 137 70.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 3.1e-38 162.5 132 71.2
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 9.0e-38 161.0 138 68.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 9.0e-38 161.0 138 68.1
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.2e-37 160.6 137 68.6
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.2e-37 160.6 137 68.6
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 2.2e-36 156.4 140 68.6
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 8.4e-36 154.5 140 66.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.9e-35 153.3 140 65.7
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 1.0e-33 147.5 140 64.3
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 4.8e-31 138.7 128 63.3
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.6e-29 132.9 123 65.0
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 2.5e-24 116.3 137 54.0
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 4.3e-24 115.5 140 52.1
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.7e-15 85.9 148 41.9
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.4e-14 83.2 143 39.9
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 2.6e-13 79.7 140 38.6
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 5.8e-13 78.6 147 41.5
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 2.9e-12 76.3 148 38.5
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 6.5e-12 75.1 150 38.7
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 8.4e-12 74.7 148 38.5
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 8.4e-12 74.7 154 40.9
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.9e-11 73.6 133 39.1
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 5.5e-11 72.0 145 42.1
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 3.5e-10 69.3 133 39.8
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.5e-10 69.3 180 30.6
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 6.1e-10 68.6 186 32.3
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 6.1e-10 68.6 143 38.5
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 6.1e-10 68.6 149 34.2
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 6.1e-10 68.6 146 35.6
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 6.1e-10 68.6 146 35.6
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.0e-09 67.8 162 32.7
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.3e-09 67.4 148 37.2
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 2.3e-09 66.6 165 34.5
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.3e-09 66.6 150 37.3
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 3.9e-09 65.9 142 37.3
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.9e-09 65.9 142 35.2
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.1e-08 64.3 148 34.5
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-08 64.3 140 35.7
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.1e-08 64.3 140 35.7
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 1.1e-08 64.3 140 34.3
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.1e-08 64.3 151 33.8
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.1e-08 64.3 135 37.0
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 1.5e-08 63.9 140 37.1
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.5e-08 63.9 150 38.0
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.5e-08 63.9 123 39.0
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.3e-08 62.8 141 33.3
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.3e-08 62.4 148 34.5
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.3e-08 62.4 140 35.0
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 4.3e-08 62.4 153 32.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.3e-08 62.4 125 36.8
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 4.3e-08 62.4 143 31.5
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.7e-08 62.0 141 34.8
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 7.4e-08 61.6 177 31.6
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 7.4e-08 61.6 137 37.2
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.6e-07 60.5 152 33.6
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.2e-07 60.1 146 34.2
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 3.7e-07 59.3 123 35.8
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.7e-07 59.3 133 34.6
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 4.8e-07 58.9 134 34.3
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.8e-07 58.9 146 34.2
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.1e-06 57.8 142 32.4
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.1e-06 57.8 134 34.3
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.4e-06 57.4 145 33.8
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.4e-06 56.6 146 33.6
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 4.1e-06 55.8 89 39.3
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 4.1e-06 55.8 149 34.2
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 5.3e-06 55.5 182 29.7
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 5.3e-06 55.5 114 33.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 6.9e-06 55.1 156 34.6
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 6.9e-06 55.1 150 33.3
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 6.9e-06 55.1 155 31.6


User provided reference genes

Program Settings