Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04899 Brassica carinata HOM05D004768 ORTHO05D005812 1.1e-87 326.6 163 100.0
BolC3t15591H Brassica oleracea HOM05D000416 ORTHO05D000322 1.1e-31 140.6 93 78.5
C08p38320 Brassica napus HOM05D004768 ORTHO05D005812 8.0e-27 124.4 164 46.3
A09p55390 Brassica napus HOM05D004768 ORTHO05D005812 1.8e-26 123.2 164 46.3
BraA09t40941Z Brassica rapa HOM05D004768 ORTHO05D005812 1.8e-26 123.2 164 46.3
BolC8t51408H Brassica oleracea HOM05D004768 ORTHO05D005812 4.0e-26 122.1 164 45.7
A08p05150 Brassica napus HOM05D004768 ORTHO05D005812 1.2e-25 120.6 158 48.1
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 7.5e-25 117.9 160 46.9
Cpa.g.sc5.22 Carica papaya HOM05D004768 ORTHO05D005812 4.9e-24 115.2 166 44.0
Sp4g05920 Schrenkiella parvula HOM05D004768 ORTHO05D005812 3.3e-20 102.4 134 47.8
BcaB08g35238 Brassica carinata HOM05D004768 ORTHO05D005812 7.3e-20 101.3 130 46.9
C08p05390 Brassica napus HOM05D004768 ORTHO05D005812 1.6e-19 100.1 53 90.6
BcaC07g40836 Brassica carinata HOM05D004768 ORTHO05D005812 2.8e-19 99.4 132 45.5
Ciclev10012077m.g Citrus clementina HOM05D004768 ORTHO05D005812 3.6e-19 99.0 162 39.5
Thhalv10002028m.g Eutrema salsugineum HOM05D004768 ORTHO05D005812 4.7e-19 98.6 134 46.3
Atru.chr8.1546 Acer truncatum HOM05D004768 ORTHO05D005812 1.5e-17 93.6 163 37.4
AT2G26060 Arabidopsis thaliana HOM05D004768 ORTHO05D005812 1.5e-17 93.6 132 45.5
FAN05G5395 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.5e-17 93.6 165 37.0
FAN09G1393 Fragaria x ananassa HOM05D004768 ORTHO05D005812 1.5e-17 93.6 165 37.6
AL4G18210 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.0e-17 93.2 132 45.5
C03p32520 Brassica napus HOM05D000416 ORTHO05D000322 7.5e-17 91.3 80 63.8
FAN05G3800 Fragaria x ananassa HOM05D004768 ORTHO05D005812 9.8e-17 90.9 165 36.4
Carub.0004s0588 Capsella rubella HOM05D004768 ORTHO05D005812 8.3e-16 87.8 49 83.7
BraA08t32532Z Brassica rapa HOM05D004768 ORTHO05D005812 1.1e-15 87.4 95 57.9
Sabra16G0131600 Salix brachista HOM05D004768 ORTHO05D000138 1.4e-15 87.0 163 36.8
CANSAT78G2462 Cannabis sativa HOM05D004768 ORTHO05D005812 2.4e-15 86.3 164 35.4
THA.LOC104816391 Tarenaya hassleriana HOM05D004768 ORTHO05D005812 2.4e-15 86.3 129 40.3
EL10Ac4g08444 Beta vulgaris HOM05D004768 ORTHO05D005812 5.4e-15 85.1 163 34.4
PSO229G0127 Papaver somniferum HOM05D004768 ORTHO05D005812 5.4e-15 85.1 164 37.2
TAR633G0463 Trochodendron aralioides HOM05D004768 ORTHO05D005812 7.0e-15 84.7 55 72.7
CARHR114770 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.7e-14 82.8 48 79.2
RcHm_v2.0_Chr3g0473611 Rosa chinensis HOM05D004768 ORTHO05D005812 2.7e-14 82.8 48 77.1
CiPaw.09G013600 Carya illinoinensis HOM05D004768 ORTHO05D005812 4.6e-14 82.0 128 40.6
Manes.09G055600 Manihot esculenta HOM05D004768 ORTHO05D005812 4.6e-14 82.0 48 77.1
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 7.8e-14 81.3 130 41.5
Aqoxy2G01203 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 1.0e-13 80.9 51 76.5
FvH4_6g18650 Fragaria vesca HOM05D004768 ORTHO05D005812 1.0e-13 80.9 48 75.0
Gorai.002G240100 Gossypium raimondii HOM05D004768 ORTHO05D005812 1.7e-13 80.1 133 39.8
Aqoxy3G02763 Aquilegia oxysepala HOM05D004768 ORTHO05D005812 2.3e-13 79.7 172 34.3
AL7G18690 Arabidopsis lyrata HOM05D004768 ORTHO05D005812 2.3e-13 79.7 132 40.9
CDE02G3328 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 2.3e-13 79.7 166 35.5
CiPaw.10G009400 Carya illinoinensis HOM05D004768 ORTHO05D005812 3.0e-13 79.3 48 72.9
Duzib128G0567 Durio zibethinus HOM05D004768 ORTHO05D005812 3.0e-13 79.3 50 76.0
Gohir.D01G195900 Gossypium hirsutum HOM05D004768 ORTHO05D005812 3.0e-13 79.3 133 39.8
Thecc.05G088700 Theobroma cacao HOM05D004768 ORTHO05D005812 3.0e-13 79.3 133 37.6
Gohir.A01G206500 Gossypium hirsutum HOM05D004768 ORTHO05D005812 3.9e-13 79.0 133 39.8
MSTRG.10364 Avicennia marina HOM05D004768 ORTHO05D005812 5.0e-13 78.6 52 71.2
CDE08G0455 Ceratophyllum demersum HOM05D004768 ORTHO05D005812 5.0e-13 78.6 162 34.6
Nn2g14155 Nelumbo nucifera HOM05D004768 ORTHO05D005812 5.0e-13 78.6 46 76.1
HanXRQChr01g0001951 Helianthus annuus HOM05D004768 ORTHO05D005812 8.6e-13 77.8 46 76.1
Potri.002G212800 Populus trichocarpa HOM05D004768 ORTHO05D005812 8.6e-13 77.8 48 72.9
Prupe.7G110600 Prunus persica HOM05D004768 ORTHO05D005812 8.6e-13 77.8 48 70.8
COL.COLO4_29739 Corchorus olitorius HOM05D004768 ORTHO05D005812 1.1e-12 77.4 130 38.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.1e-12 77.4 46 76.1
QL07p038809 Quercus lobata HOM05D004768 ORTHO05D005812 1.5e-12 77.0 48 75.0
QL07p039071 Quercus lobata HOM05D004768 ORTHO05D005812 1.5e-12 77.0 48 75.0
Carub.0007s0749 Capsella rubella HOM05D004768 ORTHO05D005812 1.9e-12 76.6 132 37.1
CARHR241000 Cardamine hirsuta HOM05D004768 ORTHO05D005812 2.5e-12 76.3 50 72.0
Lsat_1_v5_gn_5_164801 Lactuca sativa HOM05D004768 ORTHO05D005812 2.5e-12 76.3 46 73.9
Oeu047201.1 Olea europaea HOM05D004768 ORTHO05D005812 3.3e-12 75.9 130 36.9
Actinidia05433 Actinidia chinensis HOM05D004768 ORTHO05D005812 4.3e-12 75.5 61 60.7
PSO384G2514 Papaver somniferum HOM05D004768 ORTHO05D005812 4.3e-12 75.5 48 70.8
Potri.001G221000 Populus trichocarpa HOM05D004768 ORTHO05D005812 4.3e-12 75.5 48 70.8
Lj1g0007409 Lotus japonicus HOM05D004768 ORTHO05D005812 5.6e-12 75.1 52 63.5
GSVIVG01033839001 Vitis vinifera HOM05D004768 ORTHO05D005812 5.6e-12 75.1 48 70.8
MD12G1035900 Malus domestica HOM05D004768 ORTHO05D005812 7.3e-12 74.7 49 65.3
Sc02g0000880 Simmondsia chinensis HOM05D004768 ORTHO05D005812 7.3e-12 74.7 47 68.1
TWI74G0982 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 7.3e-12 74.7 47 74.5
FAN02G2744 Fragaria x ananassa HOM05D004768 ORTHO05D005812 9.5e-12 74.3 48 72.9
Lj2A136G54 Lonicera japonica HOM05D004768 ORTHO05D005812 9.5e-12 74.3 128 37.5
TWI77G0792 Tripterygium wilfordii HOM05D004768 ORTHO05D005812 9.5e-12 74.3 46 73.9
ClCG10G018990 Citrullus lanatus HOM05D004768 ORTHO05D005812 1.6e-11 73.6 44 72.7
arahy.Tifrunner.gnm1.ann1.F6QZS0 Arachis hypogaea HOM05D004768 ORTHO05D005812 2.1e-11 73.2 46 71.7
arahy.Tifrunner.gnm1.ann1.UHNL6N Arachis hypogaea HOM05D004768 ORTHO05D005812 2.1e-11 73.2 49 65.3
CSS0047457 Camellia sinensis var. sinensis HOM05D004768 ORTHO05D005812 2.1e-11 73.2 51 66.7
Glyma.03G195400 Glycine max HOM05D004768 ORTHO05D005812 2.1e-11 73.2 51 62.7
PSO339G5247 Papaver somniferum HOM05D004768 ORTHO05D005812 2.1e-11 73.2 48 68.8
Zm00001eb304430 Zea mays HOM05D004768 ORTHO05D005812 2.1e-11 73.2 164 33.5
Nitab4.5_0003550g0050 Nicotiana tabacum HOM05D004768 ORTHO05D005812 2.8e-11 72.8 49 67.3
Os07g0252000 Oryza sativa ssp. japonica HOM05D004768 ORTHO05D005812 2.8e-11 72.8 164 32.3
HPP92_013808 Vanilla planifolia HOM05D004768 ORTHO05D005812 2.8e-11 72.8 167 32.3
Ca_09003_v3 Cicer arietinum L. HOM05D004768 ORTHO05D005812 3.6e-11 72.4 46 71.7
MD14G1022600 Malus domestica HOM05D004768 ORTHO05D005812 3.6e-11 72.4 48 64.6
PGR142G0725 Punica granatum HOM05D004768 ORTHO05D005812 3.6e-11 72.4 45 71.1
AUR62017616 Chenopodium quinoa HOM05D004768 ORTHO05D005812 4.7e-11 72.0 51 64.7
VMungo1383G3473 Vigna mungo HOM05D004768 ORTHO05D005812 4.7e-11 72.0 49 67.3
Cc06_g05720 Coffea canephora HOM05D004768 ORTHO05D005812 6.2e-11 71.6 45 73.3
Psat3g033480 Pisum sativum HOM05D004768 ORTHO05D005812 8.0e-11 71.2 48 68.8
SalBow7G2666 Salvia bowleyana HOM05D004768 ORTHO05D005812 8.0e-11 71.2 50 62.0
Phvul.001G190000 Phaseolus vulgaris HOM05D004768 ORTHO05D005812 1.1e-10 70.9 49 65.3
Solyc09g074400.3 Solanum lycopersicum HOM05D004768 ORTHO05D005812 1.1e-10 70.9 46 71.7
DCAR_009162 Daucus carota HOM05D004768 ORTHO05D005812 1.4e-10 70.5 142 33.1
Eucgr.K02044 Eucalyptus grandis HOM05D004768 ORTHO05D005812 1.4e-10 70.5 46 69.6
BcaC07g37166 Brassica carinata HOM05D004768 ORTHO05D005812 1.8e-10 70.1 112 42.0
EL10Ac4g08441 Beta vulgaris HOM05D004768 ORTHO05D005812 2.3e-10 69.7 48 66.7
Sopen09g029240 Solanum pennellii HOM05D004768 ORTHO05D005812 2.3e-10 69.7 46 69.6
SGA_v2.0_scaffold184G39961 Striga asiatica HOM05D004768 ORTHO05D005812 2.3e-10 69.7 48 66.7
TPR.G19532 Trifolium pratense HOM05D004768 ORTHO05D005812 2.3e-10 69.7 48 64.6
unitig_746.g26778 Utricularia gibba HOM05D004768 ORTHO05D005812 2.3e-10 69.7 132 34.8
Nitab4.5_0001107g0160 Nicotiana tabacum HOM05D004768 ORTHO05D005812 3.1e-10 69.3 49 65.3
Migut.L01777 Erythranthe guttata HOM05D004768 ORTHO05D005812 4.0e-10 68.9 50 66.0
Sed0028141 Sechium edule HOM05D004768 ORTHO05D005812 4.0e-10 68.9 127 35.4
CARHR262780 Cardamine hirsuta HOM05D004768 ORTHO05D005812 5.2e-10 68.6 43 72.1
ATR0776G063 Amborella trichopoda HOM05D004768 ORTHO05D005812 6.8e-10 68.2 46 65.2
FAN14G4330 Fragaria x ananassa HOM05D004768 ORTHO05D005812 6.8e-10 68.2 165 31.5
HanXRQChr05g0133111 Helianthus annuus HOM05D004768 ORTHO05D005812 6.8e-10 68.2 108 43.5
Hma1.2p1_0084F.1_g043770 Hydrangea macrophylla HOM05D004768 ORTHO05D005812 6.8e-10 68.2 128 35.2
Lsat_1_v5_gn_8_77061 Lactuca sativa HOM05D004768 ORTHO05D005812 6.8e-10 68.2 46 69.6
vmacro07406 Vaccinium macrocarpon HOM05D004768 ORTHO05D005812 6.8e-10 68.2 51 66.7
Medtr7g104550 Medicago truncatula HOM05D004768 ORTHO05D005812 1.2e-09 67.4 48 64.6
Aa31LG7G14190 Aethionema arabicum HOM05D004768 ORTHO05D005812 1.5e-09 67.0 134 35.1
Sed0006419 Sechium edule HOM05D004768 ORTHO05D005812 1.5e-09 67.0 46 67.4
MELO3C009471.2 Cucumis melo HOM05D004768 ORTHO05D005812 7.5e-09 64.7 44 65.9
Peaxi162Scf00290g00062 Petunia axillaris HOM05D004768 ORTHO05D005812 7.5e-09 64.7 46 65.2
Rhsim03G0075500 Rhododendron simsii HOM05D004768 ORTHO05D005812 7.5e-09 64.7 82 46.3
Lalb_Chr20g0111731 Lupinus albus HOM05D004768 ORTHO05D005812 9.8e-09 64.3 49 57.1
CsaV3_3G037260 Cucumis sativus L. HOM05D004768 ORTHO05D005812 1.3e-08 63.9 44 68.2
DCAR_020747 Daucus carota HOM05D004768 ORTHO05D005812 2.2e-08 63.2 47 63.8
SEGI_40271 Sequoiadendron giganteum HOM05D004768 ORTHO05D005812 1.1e-07 60.8 163 29.4
SalBow1G3573 Salvia bowleyana HOM05D004768 ORTHO05D005812 1.4e-07 60.5 48 56.2
MSTRG.26639 Avicennia marina HOM05D004768 ORTHO05D005812 2.4e-07 59.7 49 53.1
Sabra16G0123600 Salix brachista HOM05D000102 ORTHO05D005812 2.4e-07 59.7 133 33.8
Pp3c21_14500 Physcomitrium patens HOM05D004768 ORTHO05D005812 9.2e-07 57.8 96 37.5
AagrBONN_evm.TU.Sc2ySwM_344.1733 Anthoceros agrestis HOM05D004768 ORTHO05D005812 2.7e-06 56.2 139 30.2
Mapoly0001s0287 Marchantia polymorpha HOM05D004768 ORTHO05D005812 7.8e-06 54.7 162 26.5


User provided reference genes

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