Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 9.4e-130 466.8 233 100.0
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 1.6e-76 290.0 246 67.5
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.7e-76 289.3 246 67.1
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 7.8e-76 287.7 246 66.7
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 5.1e-75 285.0 246 67.9
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 8.1e-73 277.7 253 64.8
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 7.6e-71 271.2 246 64.2
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.2e-70 269.6 246 63.8
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.2e-68 263.8 246 64.2
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.7e-68 262.7 247 63.2
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 6.6e-67 258.1 266 59.4
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 9.6e-66 254.2 247 61.1
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 3.4e-63 245.7 248 58.5
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.3e-58 229.2 242 55.4
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 4.3e-58 228.8 254 56.3
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.3e-51 207.2 243 50.2
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 3.3e-50 202.6 238 51.3
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 9.6e-50 201.1 236 50.4
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.8e-49 199.5 240 51.2
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 2.8e-49 199.5 242 50.8
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 6.2e-49 198.4 241 48.1
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 3.1e-48 196.1 242 49.6
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 5.3e-48 195.3 246 47.2
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 5.3e-48 195.3 238 50.4
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 5.3e-48 195.3 246 50.0
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 6.9e-48 194.9 241 49.4
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 1.2e-47 194.1 238 50.0
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 2.0e-47 193.4 238 48.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 2.6e-47 193.0 240 50.4
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 2.6e-47 193.0 245 49.4
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 2.6e-47 193.0 241 49.4
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 3.4e-47 192.6 236 49.2
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 3.4e-47 192.6 241 50.2
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 5.8e-47 191.8 241 48.5
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 5.8e-47 191.8 241 49.0
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 1.3e-46 190.7 242 49.2
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.7e-46 190.3 203 55.7
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.7e-46 190.3 203 55.7
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.7e-46 190.3 241 49.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 2.9e-46 189.5 241 49.8
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.9e-46 189.5 243 48.6
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 3.8e-46 189.1 241 47.3
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 3.8e-46 189.1 241 49.4
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.5e-46 188.3 240 48.8
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 8.4e-46 188.0 241 49.4
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.4e-46 188.0 238 47.1
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 8.4e-46 188.0 241 48.1
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 8.4e-46 188.0 243 46.9
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 8.4e-46 188.0 241 47.3
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.1e-45 187.6 241 49.0
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-45 187.2 239 48.5
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.9e-45 186.8 239 48.1
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.9e-45 186.8 243 48.1
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 2.5e-45 186.4 239 48.5
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 2.5e-45 186.4 246 47.2
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 2.5e-45 186.4 241 47.7
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 3.2e-45 186.0 236 47.9
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 3.2e-45 186.0 240 47.1
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 3.2e-45 186.0 241 46.9
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 3.2e-45 186.0 241 46.9
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 3.2e-45 186.0 239 47.7
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 4.2e-45 185.7 239 46.9
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 4.2e-45 185.7 243 47.7
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.2e-45 185.7 238 47.9
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 4.2e-45 185.7 239 47.3
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.5e-45 185.3 241 48.5
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 5.5e-45 185.3 241 48.5
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 5.5e-45 185.3 239 47.7
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 5.5e-45 185.3 243 46.1
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.1e-45 184.9 241 47.3
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 9.3e-45 184.5 241 48.1
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-44 184.1 246 46.7
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.2e-44 184.1 242 45.9
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.2e-44 184.1 241 48.1
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.6e-44 183.7 240 47.1
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.7e-44 183.0 239 47.7
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 2.7e-44 183.0 239 47.7
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.5e-44 182.6 241 46.1
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 3.5e-44 182.6 239 47.7
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 3.5e-44 182.6 241 47.3
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 4.6e-44 182.2 241 46.5
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.6e-44 182.2 241 46.9
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 4.6e-44 182.2 237 46.0
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.9e-44 181.4 239 45.6
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.3e-43 180.6 246 47.2
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 1.3e-43 180.6 241 48.5
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 1.8e-43 180.3 242 45.0
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 2.3e-43 179.9 242 47.1
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 3.0e-43 179.5 239 47.3
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 5.1e-43 178.7 239 47.3
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 5.1e-43 178.7 241 48.1
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 5.1e-43 178.7 231 46.3
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 6.7e-43 178.3 242 44.2
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 1.5e-42 177.2 239 47.3
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 2.5e-42 176.4 218 47.2
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-42 176.0 215 48.8
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 3.3e-42 176.0 241 47.7
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 4.3e-42 175.6 240 43.8
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 5.7e-42 175.3 237 45.6
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 9.7e-42 174.5 258 43.4
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.6e-41 173.7 177 53.7
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 2.2e-41 173.3 241 42.7
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.2e-41 173.3 242 45.5
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 2.8e-41 172.9 239 45.2
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 3.7e-41 172.6 247 45.7
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 4.8e-41 172.2 262 40.8
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 8.2e-41 171.4 242 45.0
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 9.0e-40 167.9 241 44.8
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.5e-39 167.2 177 52.0
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 2.6e-39 166.4 169 54.4
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 3.4e-39 166.0 235 45.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 4.5e-39 165.6 233 44.2
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.0e-38 164.5 177 50.8
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.3e-38 164.1 177 50.8
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.2e-36 157.5 264 40.2
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 2.7e-36 156.4 170 49.4
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 3.6e-36 156.0 257 39.7
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.8e-35 153.7 241 41.1
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 3.0e-35 152.9 201 46.8
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.9e-34 150.2 150 56.7
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 3.1e-32 142.9 137 56.2
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 7.7e-31 138.3 175 45.7
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.3e-30 137.5 159 50.3
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 3.8e-30 136.0 254 36.6
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 5.0e-30 135.6 167 44.9
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 5.5e-29 132.1 190 41.6
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 7.2e-29 131.7 145 49.0
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.9e-27 125.9 244 37.7
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 5.1e-27 125.6 244 37.3
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 8.8e-27 124.8 179 43.0
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 2.6e-26 123.2 247 34.8
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 6.9e-24 115.2 143 48.3
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.2e-20 104.4 122 45.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 6.1e-20 102.1 182 37.4
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 5.2e-19 99.0 234 35.5
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 8.8e-19 98.2 126 44.4
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 7.4e-18 95.1 160 40.0
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 7.4e-18 95.1 192 36.5
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 9.7e-18 94.7 92 54.3
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 3.2e-13 79.7 144 42.4
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 9.4e-13 78.2 181 33.1
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 3.3e-10 69.7 88 48.9
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.7e-10 68.9 46 65.2
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 5.7e-10 68.9 46 65.2
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.5e-10 68.6 46 65.2
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 7.5e-10 68.6 46 65.2
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.3e-09 67.8 54 59.3
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-08 64.3 87 44.8
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 9.1e-08 61.6 88 45.5
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.1e-08 61.6 94 41.5
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 3.5e-07 59.7 32 78.1
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.9e-07 58.9 99 42.4
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 5.9e-07 58.9 105 41.9


User provided reference genes

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