Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04858 Brassica carinata HOM05D006047 ORTHO05D007353 3.4e-43 177.9 91 100.0
Sp4g00130 Schrenkiella parvula HOM05D006047 ORTHO05D007353 2.1e-24 115.5 126 56.3
Thhalv10000376m.g Eutrema salsugineum HOM05D006047 ORTHO05D007353 4.6e-24 114.4 122 56.6
BcaB06g27764 Brassica carinata HOM05D006047 ORTHO05D007353 7.9e-24 113.6 109 62.4
AL4G10070 Arabidopsis lyrata HOM05D006047 ORTHO05D007353 1.0e-23 113.2 128 54.7
AT2G20940 Arabidopsis thaliana HOM05D006047 ORTHO05D007353 1.0e-23 113.2 128 54.7
A04p15840 Brassica napus HOM05D006047 ORTHO05D007353 1.0e-23 113.2 110 61.8
C04p50240 Brassica napus HOM05D006047 ORTHO05D007353 1.0e-23 113.2 110 61.8
BolC4t26624H Brassica oleracea HOM05D006047 ORTHO05D007353 1.0e-23 113.2 110 61.8
BraA04t17215Z Brassica rapa HOM05D006047 ORTHO05D007353 1.0e-23 113.2 110 61.8
Carub.0004s0003 Capsella rubella HOM05D006047 ORTHO05D007353 8.7e-23 110.2 128 53.1
CARHR174220 Cardamine hirsuta HOM05D006047 ORTHO05D007353 7.4e-22 107.1 129 51.9
Aa31LG6G16610 Aethionema arabicum HOM05D006047 ORTHO05D007353 8.5e-18 93.6 131 45.8
Glyma.09G245500 Glycine max HOM05D006047 ORTHO05D007353 3.6e-16 88.2 124 42.7
Glyma.18G247500 Glycine max HOM05D006047 ORTHO05D007353 5.1e-15 84.3 124 40.3
THA.LOC104824759 Tarenaya hassleriana HOM05D006047 ORTHO05D007353 1.1e-14 83.2 129 41.1
Lalb_Chr01g0021661 Lupinus albus HOM05D006047 ORTHO05D007353 1.5e-14 82.8 121 40.5
VMungo1383G0342 Vigna mungo HOM05D006047 ORTHO05D007353 1.5e-14 82.8 120 41.7
Lj1g0011713 Lotus japonicus HOM05D006047 ORTHO05D007353 3.3e-14 81.6 120 39.2
TPR.G32107 Trifolium pratense HOM05D006047 ORTHO05D007353 3.3e-14 81.6 131 38.2
Aqoxy1G03282 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 4.3e-14 81.3 130 38.5
MD10G1125900 Malus domestica HOM05D006047 ORTHO05D007353 5.7e-14 80.9 142 36.6
Phvul.008G049800 Phaseolus vulgaris HOM05D006047 ORTHO05D007353 5.7e-14 80.9 120 40.0
Lalb_Chr19g0126421 Lupinus albus HOM05D006047 ORTHO05D007353 9.7e-14 80.1 121 38.0
MD05G1123100 Malus domestica HOM05D006047 ORTHO05D007353 9.7e-14 80.1 142 36.6
Gohir.D01G001800 Gossypium hirsutum HOM05D006047 ORTHO05D007353 1.7e-13 79.3 129 38.8
Gorai.002G002400 Gossypium raimondii HOM05D006047 ORTHO05D007353 1.7e-13 79.3 129 38.8
GSVIVG01024006001 Vitis vinifera HOM05D006047 ORTHO05D007353 1.7e-13 79.3 123 39.8
COL.COLO4_17357 Corchorus olitorius HOM05D006047 ORTHO05D007353 2.2e-13 79.0 137 38.0
Ca_08043_v3 Cicer arietinum L. HOM05D006047 ORTHO05D007353 2.8e-13 78.6 120 39.2
CANSAT21G1105 Cannabis sativa HOM05D006047 ORTHO05D007353 3.7e-13 78.2 139 36.7
Gohir.A01G002200 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.7e-13 78.2 129 38.0
Duzib132G0293 Durio zibethinus HOM05D006047 ORTHO05D007353 4.8e-13 77.8 131 37.4
SHI05754 Sapria himalayana HOM05D006047 ORTHO05D007353 4.8e-13 77.8 129 38.8
Duzib248G0446 Durio zibethinus HOM05D006047 ORTHO05D007353 6.3e-13 77.4 137 38.0
Medtr7g081070 Medicago truncatula HOM05D006047 ORTHO05D007353 6.3e-13 77.4 122 37.7
Psat3g100240 Pisum sativum HOM05D006047 ORTHO05D007353 8.2e-13 77.0 122 37.7
Prupe.8G167000 Prunus persica HOM05D006047 ORTHO05D007353 8.2e-13 77.0 144 34.7
RcHm_v2.0_Chr6g0278481 Rosa chinensis HOM05D006047 ORTHO05D007353 8.2e-13 77.0 127 37.0
SGA_v2.0_scaffold207G41930 Striga asiatica HOM05D006047 ORTHO05D007353 8.2e-13 77.0 134 35.8
Ah.01g023100 Amaranthus hybridus HOM05D006047 ORTHO05D007353 1.1e-12 76.6 128 37.5
Lsat_1_v5_gn_4_71821 Lactuca sativa HOM05D006047 ORTHO05D007353 1.1e-12 76.6 134 36.6
Cfa005258 Carpinus fangiana HOM05D006047 ORTHO05D007353 1.8e-12 75.9 141 35.5
Haze_02125 Corylus avellana HOM05D006047 ORTHO05D007353 1.8e-12 75.9 141 35.5
DCAR_003178 Daucus carota HOM05D006047 ORTHO05D007353 1.8e-12 75.9 126 35.7
MBI16_g27295_MAGBIO Magnolia biondii HOM05D006047 ORTHO05D007353 1.8e-12 75.9 131 35.9
ATR0064G037 Amborella trichopoda HOM05D006047 ORTHO05D007353 2.4e-12 75.5 145 33.8
FvH4_2g15480 Fragaria vesca HOM05D006047 ORTHO05D007353 3.1e-12 75.1 127 36.2
FAN15G3104 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.1e-12 75.1 127 36.2
FAN20G3211 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.1e-12 75.1 127 36.2
FAN24G2638 Fragaria x ananassa HOM05D006047 ORTHO05D007353 3.1e-12 75.1 127 36.2
Gohir.A03G205400 Gossypium hirsutum HOM05D006047 ORTHO05D007353 3.1e-12 75.1 138 36.2
Aqoxy3G00951 Aquilegia oxysepala HOM05D006047 ORTHO05D007353 4.1e-12 74.7 134 35.8
vmacro17313 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 4.1e-12 74.7 142 33.8
BcaB01g02958 Brassica carinata HOM05D006047 ORTHO05D007353 5.3e-12 74.3 121 42.1
Gohir.D02G226700 Gossypium hirsutum HOM05D006047 ORTHO05D007353 5.3e-12 74.3 138 35.5
Gorai.005G254600 Gossypium raimondii HOM05D006047 ORTHO05D007353 5.3e-12 74.3 138 35.5
vmacro17314 Vaccinium macrocarpon HOM05D006047 ORTHO05D007353 5.3e-12 74.3 139 36.0
Ciclev10029458m.g Citrus clementina HOM05D006047 ORTHO05D007353 6.9e-12 73.9 154 33.8
PGR083G0073 Punica granatum HOM05D006047 ORTHO05D007353 6.9e-12 73.9 99 41.4
Cpa.g.sc20.97 Carica papaya HOM05D006047 ORTHO05D007353 9.1e-12 73.6 152 33.6
AUR62010029 Chenopodium quinoa HOM05D006047 ORTHO05D007353 9.1e-12 73.6 133 36.1
AUR62013019 Chenopodium quinoa HOM05D006047 ORTHO05D007353 9.1e-12 73.6 133 36.1
FAN27G2596 Fragaria x ananassa HOM05D001601 ORTHO05D002628 9.1e-12 73.6 126 36.5
EL10Ac9g21359 Beta vulgaris HOM05D006047 ORTHO05D007353 1.2e-11 73.2 133 35.3
CiPaw.06G121100 Carya illinoinensis HOM05D006047 ORTHO05D007353 2.6e-11 72.0 146 34.9
MELO3C020826.2 Cucumis melo HOM05D006047 ORTHO05D007353 2.6e-11 72.0 137 34.3
CsaV3_2G016180 Cucumis sativus L. HOM05D006047 ORTHO05D007353 2.6e-11 72.0 137 34.3
HanXRQChr10g0300821 Helianthus annuus HOM05D006047 ORTHO05D007353 2.6e-11 72.0 130 37.7
Manes.11G097000 Manihot esculenta HOM05D006047 ORTHO05D007353 2.6e-11 72.0 141 35.5
Nn6g31863 Nelumbo nucifera HOM05D006047 ORTHO05D007353 2.6e-11 72.0 144 33.3
Eucgr.G01785 Eucalyptus grandis HOM05D006047 ORTHO05D007353 3.4e-11 71.6 150 32.7
HanXRQChr12g0374651 Helianthus annuus HOM05D006047 ORTHO05D007353 3.4e-11 71.6 128 38.3
Rhsim05G0054100 Rhododendron simsii HOM05D006047 ORTHO05D007353 3.4e-11 71.6 140 35.0
Thecc.02G058000 Theobroma cacao HOM05D006047 ORTHO05D007353 3.4e-11 71.6 137 34.3
unitig_52.g17373 Utricularia gibba HOM05D006047 ORTHO05D007353 3.4e-11 71.6 131 34.4
AagrBONN_evm.TU.Sc2ySwM_362.1962 Anthoceros agrestis HOM05D006047 ORTHO05D007353 5.9e-11 70.9 130 34.6
CiPaw.05G083500 Carya illinoinensis HOM05D006047 ORTHO05D007353 7.7e-11 70.5 146 34.2
TAR625G1286 Trochodendron aralioides HOM05D006047 ORTHO05D007353 7.7e-11 70.5 134 33.6
TAR625G1483 Trochodendron aralioides HOM05D006047 ORTHO05D007353 7.7e-11 70.5 134 33.6
CSS0028471 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.0e-10 70.1 143 35.7
Peaxi162Scf00362g00511 Petunia axillaris HOM05D006047 ORTHO05D007353 1.0e-10 70.1 138 34.1
Sed0015003 Sechium edule HOM05D006047 ORTHO05D007353 1.0e-10 70.1 141 33.3
CSS0000109 Camellia sinensis var. sinensis HOM05D006047 ORTHO05D007353 1.3e-10 69.7 133 36.1
ClCG02G012010 Citrullus lanatus HOM05D006047 ORTHO05D007353 1.3e-10 69.7 138 33.3
Sed0000957 Sechium edule HOM05D006047 ORTHO05D007353 1.3e-10 69.7 131 35.1
Cc09_g09850 Coffea canephora HOM05D006047 ORTHO05D007353 1.7e-10 69.3 145 33.8
Atru.chr5.3378 Acer truncatum HOM05D006047 ORTHO05D007353 2.2e-10 68.9 156 30.8
Solyc01g111670.4 Solanum lycopersicum HOM05D006047 ORTHO05D007353 2.2e-10 68.9 141 33.3
Sopen01g053710 Solanum pennellii HOM05D006047 ORTHO05D007353 2.2e-10 68.9 141 33.3
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 2.2e-10 68.9 132 34.1
Dinv41931 Davidia involucrata HOM05D006047 ORTHO05D007353 3.8e-10 68.2 141 34.0
Migut.N01327 Erythranthe guttata HOM05D006047 ORTHO05D007353 3.8e-10 68.2 141 31.9
TWI31G0769 Tripterygium wilfordii HOM05D006047 ORTHO05D007353 3.8e-10 68.2 136 35.3
PGSC0003DMG400006182 Solanum tuberosum HOM05D006047 ORTHO05D007353 5.0e-10 67.8 145 34.5
HPP92_012949 Vanilla planifolia HOM05D006047 ORTHO05D007353 5.0e-10 67.8 148 31.1
Actinidia32040 Actinidia chinensis HOM05D006047 ORTHO05D007353 8.5e-10 67.0 112 37.5
Hma1.2p1_0163F.1_g072560 Hydrangea macrophylla HOM05D006047 ORTHO05D007353 1.1e-09 66.6 143 32.2
Solyc03g044590.2 Solanum lycopersicum HOM05D006047 ORTHO05D007353 1.1e-09 66.6 116 37.1
PSO063G4836 Papaver somniferum HOM05D006047 ORTHO05D007353 1.4e-09 66.2 145 32.4
ECA234G0646 Erigeron canadensis HOM05D006047 ORTHO05D000476 1.9e-09 65.9 127 35.4
PSO782G4934 Papaver somniferum HOM05D006047 ORTHO05D007353 1.9e-09 65.9 146 32.2
Actinidia39157 Actinidia chinensis HOM05D006047 ORTHO05D007353 3.2e-09 65.1 111 36.9
Actinidia21466 Actinidia chinensis HOM05D006047 ORTHO05D007353 1.6e-08 62.8 111 36.0
CDE02G0256 Ceratophyllum demersum HOM05D006047 ORTHO05D007353 4.7e-08 61.2 125 30.4
QL11p050986 Quercus lobata HOM05D006047 ORTHO05D007353 7.9e-08 60.5 135 33.3
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.3e-07 58.9 119 32.8
Lsat_1_v5_gn_8_123180 Lactuca sativa HOM05D006047 ORTHO05D007353 8.8e-07 57.0 129 32.6
Sc08g0002850 Simmondsia chinensis HOM05D006047 ORTHO05D007353 5.7e-06 54.3 50 52.0
PGR042G1307 Punica granatum HOM05D006047 ORTHO05D007353 7.4e-06 53.9 39 64.1
Sopen11g024350 Solanum pennellii HOM05D006047 ORTHO05D007353 7.4e-06 53.9 38 63.2


User provided reference genes

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