Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 1.7e-39 165.6 87 100.0
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 1.7e-39 165.6 87 100.0
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 1.7e-39 165.6 87 100.0
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 2.0e-37 158.7 87 96.6
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 2.0e-37 158.7 87 96.6
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 4.6e-37 157.5 87 95.4
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 5.8e-32 140.6 72 84.7
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 9.8e-32 139.8 87 87.4
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 8.6e-28 126.7 71 81.7
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 1.1e-27 126.3 71 81.7
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 3.3e-27 124.8 70 80.0
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 3.3e-27 124.8 71 81.7
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 6.2e-26 120.6 71 76.1
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 3.1e-25 118.2 64 78.1
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 7.5e-24 113.6 68 73.5
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 1.6e-21 105.9 91 58.2
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 1.7e-20 102.4 65 67.7
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 2.3e-20 102.1 68 63.2
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 1.1e-19 99.8 87 66.7
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 2.5e-19 98.6 65 61.5
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 5.6e-19 97.4 74 58.1
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 7.3e-19 97.1 83 55.4
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 7.3e-19 97.1 89 64.0
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 9.5e-19 96.7 87 66.7
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 9.5e-19 96.7 88 68.2
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 1.1e-17 93.2 70 60.0
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 1.1e-17 93.2 74 62.2
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 1.1e-17 93.2 82 54.9
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 6.8e-17 90.5 89 50.6
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 1.5e-16 89.4 88 62.5
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.5e-16 89.4 71 56.3
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 2.0e-16 89.0 90 65.6
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 3.4e-16 88.2 59 64.4
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 4.4e-16 87.8 72 61.1
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 5.8e-16 87.4 68 57.4
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 7.6e-16 87.0 85 49.4
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-15 85.9 71 60.6
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-15 85.9 71 60.6
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-15 85.9 71 60.6
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 1.7e-15 85.9 71 60.6
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 2.2e-15 85.5 86 58.1
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.9e-15 85.1 68 52.9
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 3.8e-15 84.7 58 58.6
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.8e-15 84.7 74 58.1
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 3.8e-15 84.7 71 49.3
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 8.4e-15 83.6 61 57.4
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.9e-14 82.4 56 58.9
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 2.4e-14 82.0 64 60.9
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 4.2e-14 81.3 66 53.0
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.2e-13 79.7 53 60.4
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 1.2e-13 79.7 75 50.7
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 2.1e-13 79.0 64 53.1
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 2.1e-13 79.0 70 55.7
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.5e-13 78.2 74 45.9
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 3.5e-13 78.2 59 59.3
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 4.6e-13 77.8 65 52.3
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 6.0e-13 77.4 50 62.0
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 1.3e-12 76.3 70 52.9
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.3e-12 76.3 60 55.0
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 1.3e-12 76.3 61 49.2
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 2.3e-12 75.5 74 45.9
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 2.3e-12 75.5 74 45.9
CSS0015820 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 5.1e-12 74.3 74 54.1
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.5e-11 72.8 47 63.8
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 1.5e-11 72.8 47 63.8
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 1.5e-11 72.8 47 63.8
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 1.9e-11 72.4 87 59.8
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 3.3e-11 71.6 78 46.2
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 4.3e-11 71.2 56 50.0
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 5.6e-11 70.9 80 55.0
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 7.3e-11 70.5 70 48.6
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 4.8e-10 67.8 60 45.0
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 6.2e-10 67.4 91 42.9
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 1.4e-09 66.2 56 53.6
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.8e-09 65.9 87 47.1
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 1.8e-09 65.9 87 47.1
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 2.4e-09 65.5 47 57.4
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 5.3e-09 64.3 61 52.5
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 5.3e-09 64.3 58 44.8
SMO358G0048 Selaginella moellendorffii HOM05D007709 ORTHO05D009577 2.6e-08 62.0 56 44.6
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.1e-06 56.6 67 43.3
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.1e-06 56.6 67 43.3
Eucgr.G01861 Eucalyptus grandis HOM05D007709 ORTHO05D009577 1.4e-06 56.2 47 55.3
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 4.2e-06 54.7 60 43.3
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 4.2e-06 54.7 60 43.3
FAN27G0823 Fragaria x ananassa HOM05D007709 ORTHO05D009577 7.1e-06 53.9 50 46.0


User provided reference genes

Program Settings