Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04827 Brassica carinata HOM05D005145 ORTHO05D006062 3.8e-41 171.0 82 100.0
BcaB01g00448 Brassica carinata HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
BcaC06g33022 Brassica carinata HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
BcaNung06088 Brassica carinata HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
A09p45140 Brassica napus HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
C07p46760 Brassica napus HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
C08p27330 Brassica napus HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
BolC7t45194H Brassica oleracea HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
BraA09t39975Z Brassica rapa HOM05D005145 ORTHO05D006062 3.0e-38 161.4 79 96.2
A03p48650 Brassica napus HOM05D005145 ORTHO05D006062 6.6e-38 160.2 79 94.9
BolC8t50350H Brassica oleracea HOM05D005145 ORTHO05D006062 8.7e-38 159.8 79 94.9
BraA03t13968Z Brassica rapa HOM05D005145 ORTHO05D006062 8.7e-38 159.8 79 93.7
BcaC06g33379 Brassica carinata HOM05D005145 ORTHO05D006062 1.1e-37 159.5 79 94.9
Carub.0003s2169 Capsella rubella HOM05D005145 ORTHO05D006062 3.3e-37 157.9 79 93.7
CARHR161760 Cardamine hirsuta HOM05D005145 ORTHO05D006062 7.3e-37 156.8 79 93.7
Thhalv10010511m.g Eutrema salsugineum HOM05D005145 ORTHO05D006062 7.3e-37 156.8 79 93.7
AT3G21640 Arabidopsis thaliana HOM05D005145 ORTHO05D006062 9.6e-37 156.4 79 92.4
Sp5g10230 Schrenkiella parvula HOM05D005145 ORTHO05D006062 1.6e-36 155.6 78 93.6
AL3G35760 Arabidopsis lyrata HOM05D005145 ORTHO05D006062 2.8e-36 154.8 79 91.1
Aa31LG10G7130 Aethionema arabicum HOM05D005145 ORTHO05D006062 4.8e-36 154.1 79 89.9
Gohir.A07G061000 Gossypium hirsutum HOM05D005145 ORTHO05D006062 2.6e-34 148.3 78 87.2
Gorai.001G069200 Gossypium raimondii HOM05D005145 ORTHO05D006062 3.4e-34 147.9 78 85.9
THA.LOC104801977 Tarenaya hassleriana HOM05D005145 ORTHO05D006062 4.4e-34 147.5 78 87.2
Gohir.D07G065700 Gossypium hirsutum HOM05D005145 ORTHO05D006062 1.3e-33 146.0 78 85.9
COL.COLO4_04870 Corchorus olitorius HOM05D005145 ORTHO05D006062 1.7e-33 145.6 78 85.9
ECA248G1413 Erigeron canadensis HOM05D005145 ORTHO05D006062 3.8e-33 144.4 78 85.9
Eucgr.G03367 Eucalyptus grandis HOM05D005145 ORTHO05D006062 3.8e-33 144.4 78 85.9
Cpa.g.sc125.17 Carica papaya HOM05D005145 ORTHO05D006062 4.9e-33 144.1 78 84.6
Duzib138G1043 Durio zibethinus HOM05D005145 ORTHO05D006062 6.4e-33 143.7 78 84.6
HanXRQChr10g0304331 Helianthus annuus HOM05D005145 ORTHO05D006062 6.4e-33 143.7 78 84.6
PGR083G1973 Punica granatum HOM05D005145 ORTHO05D006062 6.4e-33 143.7 78 84.6
QL04p008103 Quercus lobata HOM05D005145 ORTHO05D006062 1.1e-32 142.9 78 84.6
QL04p008544 Quercus lobata HOM05D005145 ORTHO05D006062 1.1e-32 142.9 78 84.6
Dinv01450 Davidia involucrata HOM05D007544 ORTHO05D006062 1.4e-32 142.5 78 85.9
Dinv30224 Davidia involucrata HOM05D007544 ORTHO05D006062 1.4e-32 142.5 78 85.9
PSO478G3750 Papaver somniferum HOM05D005145 ORTHO05D006062 1.4e-32 142.5 78 83.3
PSO782G5523 Papaver somniferum HOM05D005145 ORTHO05D006062 1.4e-32 142.5 78 83.3
TWI09G1580 Tripterygium wilfordii HOM05D005145 ORTHO05D006062 1.9e-32 142.1 78 84.6
HPP92_009711 Vanilla planifolia HOM05D005145 ORTHO05D006062 1.9e-32 142.1 77 85.7
Lj7C573G7 Lonicera japonica HOM05D005145 ORTHO05D006062 2.4e-32 141.7 79 83.5
Hund05940 Selenicereus undatus HOM05D005145 ORTHO05D006062 2.4e-32 141.7 78 83.3
unitig_749.g14327 Utricularia gibba HOM05D005145 ORTHO05D006062 4.2e-32 141.0 78 80.8
DCAR_029683 Daucus carota HOM05D005145 ORTHO05D006062 5.4e-32 140.6 79 81.0
Dinv10758 Davidia involucrata HOM05D005145 ORTHO05D006062 5.4e-32 140.6 78 84.6
Dinv43426 Davidia involucrata HOM05D005145 ORTHO05D006062 5.4e-32 140.6 78 83.3
Migut.B01287 Erythranthe guttata HOM05D005145 ORTHO05D006062 5.4e-32 140.6 78 84.6
Lj3g0020185 Lotus japonicus HOM05D005145 ORTHO05D006062 5.4e-32 140.6 78 83.3
Oeu014585.1 Olea europaea HOM05D005145 ORTHO05D006062 5.4e-32 140.6 78 83.3
Thecc.01G408700 Theobroma cacao HOM05D005145 ORTHO05D006062 5.4e-32 140.6 78 83.3
Ciclev10031893m.g Citrus clementina HOM05D005145 ORTHO05D006062 9.3e-32 139.8 78 82.1
Cc02_g28150 Coffea canephora HOM05D005145 ORTHO05D006062 9.3e-32 139.8 78 84.6
GSVIVG01032135001 Vitis vinifera HOM05D005145 ORTHO05D006062 9.3e-32 139.8 78 83.3
AUR62009396 Chenopodium quinoa HOM05D005145 ORTHO05D006062 1.2e-31 139.4 78 83.3
MD02G1308400 Malus domestica HOM05D005145 ORTHO05D006062 1.2e-31 139.4 78 83.3
RcHm_v2.0_Chr1g0317011 Rosa chinensis HOM05D005145 ORTHO05D006062 1.2e-31 139.4 78 83.3
Sc11g0009070 Simmondsia chinensis HOM05D005145 ORTHO05D006062 1.2e-31 139.4 78 82.1
Sc23g0005930 Simmondsia chinensis HOM05D005145 ORTHO05D006062 1.2e-31 139.4 78 83.3
CiPaw.14G001300 Carya illinoinensis HOM05D005145 ORTHO05D006062 1.6e-31 139.0 78 83.3
Nn7g36253 Nelumbo nucifera HOM05D005145 ORTHO05D006062 1.6e-31 139.0 78 82.1
Atru.chr11.2602 Acer truncatum HOM05D005145 ORTHO05D006062 2.1e-31 138.7 78 82.1
arahy.Tifrunner.gnm1.ann1.HLL15Q Arachis hypogaea HOM05D005145 ORTHO05D006062 2.1e-31 138.7 78 82.1
arahy.Tifrunner.gnm1.ann1.TWX3XF Arachis hypogaea HOM05D005145 ORTHO05D006062 2.1e-31 138.7 78 82.1
Solyc01g087470.3 Solanum lycopersicum HOM05D005145 ORTHO05D006062 2.1e-31 138.7 78 82.1
Sopen01g034400 Solanum pennellii HOM05D005145 ORTHO05D006062 2.1e-31 138.7 78 82.1
PGSC0003DMG400006860 Solanum tuberosum HOM05D005145 ORTHO05D006062 2.1e-31 138.7 78 82.1
CiPaw.13G006700 Carya illinoinensis HOM05D005145 ORTHO05D006062 2.7e-31 138.3 78 83.3
Manes.07G007200 Manihot esculenta HOM05D005145 ORTHO05D006062 2.7e-31 138.3 78 80.8
Peaxi162Scf00744g00356 Petunia axillaris HOM05D005145 ORTHO05D006062 2.7e-31 138.3 78 82.1
Lsat_1_v5_gn_1_105761 Lactuca sativa HOM05D005145 ORTHO05D006062 3.5e-31 137.9 78 82.1
MD02G1308300 Malus domestica HOM05D005145 ORTHO05D006062 3.5e-31 137.9 78 82.1
Potri.009G059200 Populus trichocarpa HOM05D005145 ORTHO05D006062 3.5e-31 137.9 78 80.8
AUR62023079 Chenopodium quinoa HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 83.3
Dinv09339 Davidia involucrata HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 83.3
FAN01G2312 Fragaria x ananassa HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 82.1
FAN03G2501 Fragaria x ananassa HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 82.1
FAN10G0323 Fragaria x ananassa HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 82.1
SalBow1G5123 Salvia bowleyana HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 82.1
Sed0001165 Sechium edule HOM05D005145 ORTHO05D006062 4.6e-31 137.5 78 80.8
EL10Ac2g04343 Beta vulgaris HOM05D005145 ORTHO05D006062 6.0e-31 137.1 78 82.1
ClCG10G012290 Citrullus lanatus HOM05D005145 ORTHO05D006062 6.0e-31 137.1 78 80.8
MELO3C023984.2 Cucumis melo HOM05D005145 ORTHO05D006062 6.0e-31 137.1 78 80.8
CsaV3_3G032060 Cucumis sativus L. HOM05D005145 ORTHO05D006062 6.0e-31 137.1 78 80.8
Phvul.011G012900 Phaseolus vulgaris HOM05D005145 ORTHO05D006062 6.0e-31 137.1 78 79.5
TAR636G0099 Trochodendron aralioides HOM05D005145 ORTHO05D006062 6.0e-31 137.1 78 80.8
CSS0031676 Camellia sinensis var. sinensis HOM05D005145 ORTHO05D006062 7.8e-31 136.7 78 82.1
Glyma.09G228200 Glycine max HOM05D005145 ORTHO05D006062 7.8e-31 136.7 78 80.8
Glyma.12G008300 Glycine max HOM05D005145 ORTHO05D006062 7.8e-31 136.7 78 80.8
Prupe.2G017100 Prunus persica HOM05D005145 ORTHO05D006062 7.8e-31 136.7 78 82.1
VMungo1127G0627 Vigna mungo HOM05D005145 ORTHO05D006062 7.8e-31 136.7 78 80.8
MSTRG.17025 Avicennia marina HOM05D005145 ORTHO05D006062 1.0e-30 136.3 78 82.1
FvH4_7g01260 Fragaria vesca HOM05D005145 ORTHO05D006062 1.0e-30 136.3 78 80.8
Lalb_Chr01g0000411 Lupinus albus HOM05D005145 ORTHO05D006062 1.0e-30 136.3 78 80.8
Potri.001G264400 Populus trichocarpa HOM05D005145 ORTHO05D006062 1.0e-30 136.3 78 79.5
Sabra09G0043600 Salix brachista HOM05D005145 ORTHO05D006062 1.0e-30 136.3 78 80.8
Sabra16G0162500 Salix brachista HOM05D005145 ORTHO05D006062 1.0e-30 136.3 78 79.5
Medtr4g039430 Medicago truncatula HOM05D005145 ORTHO05D006062 1.3e-30 136.0 78 80.8
TPR.G30176 Trifolium pratense HOM05D005145 ORTHO05D006062 1.3e-30 136.0 78 80.8
Psat7g183320 Pisum sativum HOM05D005145 ORTHO05D006062 1.7e-30 135.6 78 79.5
Rhsim07G0056700 Rhododendron simsii HOM05D000961 ORTHO05D000841 1.7e-30 135.6 78 80.8
Zm00001eb092870 Zea mays HOM05D005145 ORTHO05D006062 1.7e-30 135.6 78 80.8
Nitab4.5_0000707g0300 Nicotiana tabacum HOM05D005145 ORTHO05D006062 2.3e-30 135.2 78 79.5
Nitab4.5_0002918g0060 Nicotiana tabacum HOM05D005145 ORTHO05D006062 2.3e-30 135.2 78 79.5
Ca_19569_v3 Cicer arietinum L. HOM05D005145 ORTHO05D006062 3.0e-30 134.8 78 80.8
SGA_v2.0_scaffold4G02519 Striga asiatica HOM05D005145 ORTHO05D006062 3.0e-30 134.8 78 80.8
CAN.G219.41 Capsicum annuum HOM05D005145 ORTHO05D006062 3.9e-30 134.4 78 78.2
vmacro13679 Vaccinium macrocarpon HOM05D005145 ORTHO05D006062 3.9e-30 134.4 78 79.5
Dinv00032 Davidia involucrata HOM05D005145 ORTHO05D006062 5.1e-30 134.0 73 86.3
Ah.13g067830 Amaranthus hybridus HOM05D005145 ORTHO05D006062 6.6e-30 133.7 77 81.8
ATR0332G093 Amborella trichopoda HOM05D005145 ORTHO05D006062 6.6e-30 133.7 78 76.9
Aqoxy2G00161 Aquilegia oxysepala HOM05D005145 ORTHO05D006062 6.6e-30 133.7 78 79.5
Sed0004407 Sechium edule HOM05D005145 ORTHO05D006062 6.6e-30 133.7 78 79.5
Os11g0148300 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 1.1e-29 132.9 78 78.2
Os12g0145500 Oryza sativa ssp. japonica HOM05D005145 ORTHO05D006062 1.1e-29 132.9 78 78.2
Cfa010794 Carpinus fangiana HOM05D005145 ORTHO05D006062 1.5e-29 132.5 78 78.2
Actinidia31072 Actinidia chinensis HOM05D000961 ORTHO05D000841 1.9e-29 132.1 78 78.2
CANSAT35G1224 Cannabis sativa HOM05D005145 ORTHO05D006062 1.9e-29 132.1 78 76.9
MBI15_g03642_MAGBIO Magnolia biondii HOM05D005145 ORTHO05D006062 2.5e-29 131.7 77 76.6
C03p33400 Brassica napus HOM05D005145 ORTHO05D006062 5.6e-29 130.6 62 100.0
BolC3t15662H Brassica oleracea HOM05D005145 ORTHO05D006062 5.6e-29 130.6 62 100.0
Haze_03177 Corylus avellana HOM05D005145 ORTHO05D006062 5.6e-29 130.6 78 76.9
Actinidia19403 Actinidia chinensis HOM05D005145 ORTHO05D006062 7.3e-29 130.2 78 80.8
SEGI_24644 Sequoiadendron giganteum HOM05D005145 ORTHO05D006062 9.6e-29 129.8 77 76.6
CDE05G1020 Ceratophyllum demersum HOM05D005145 ORTHO05D006062 1.3e-28 129.4 78 76.9
Pp3c11_5900 Physcomitrium patens HOM05D005145 ORTHO05D006062 1.3e-28 129.4 79 69.6
SMO364G0452 Selaginella moellendorffii HOM05D005145 ORTHO05D006062 1.6e-28 129.0 78 71.8
Duzib268G1834 Durio zibethinus HOM05D005145 ORTHO05D006062 8.1e-28 126.7 73 80.8
Mapoly0068s0080 Marchantia polymorpha HOM05D005145 ORTHO05D006062 1.8e-27 125.6 79 72.2
FAN06G2757 Fragaria x ananassa HOM05D005145 ORTHO05D006062 5.3e-27 124.0 99 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2788 Anthoceros agrestis HOM05D005145 ORTHO05D006062 2.9e-25 118.2 78 65.4
A03p27690 Brassica napus HOM05D005145 ORTHO05D006062 6.7e-22 107.1 51 98.0
PSO339G1740 Papaver somniferum HOM05D005145 ORTHO05D006062 2.5e-21 105.1 78 62.8
CBR_g66761 Chara braunii HOM05D005145 ORTHO05D006062 3.3e-21 104.8 75 61.3
PSO384G2090 Papaver somniferum HOM05D005145 ORTHO05D006062 5.6e-21 104.0 78 61.5
Actinidia28555 Actinidia chinensis HOM05D005145 ORTHO05D006062 1.1e-19 99.8 58 75.9
TAR369G0045 Trochodendron aralioides HOM05D005145 ORTHO05D006062 1.8e-19 99.0 57 78.9
Dinv09243 Davidia involucrata HOM05D005145 ORTHO05D006062 2.9e-17 91.7 53 77.4
Dinv22084 Davidia involucrata HOM05D005145 ORTHO05D006062 2.9e-17 91.7 53 77.4
ATR0716G108 Amborella trichopoda HOM05D005145 ORTHO05D006062 5.1e-14 80.9 44 77.3
MD07G1015600 Malus domestica HOM05D005145 ORTHO05D006062 2.1e-12 75.5 78 52.6
Cre02.g092250 Chlamydomonas reinhardtii HOM05D000371 ORTHO05D006062 4.5e-10 67.8 74 45.9
MD07G1017300 Malus domestica HOM05D005145 ORTHO05D006062 5.0e-09 64.3 38 76.3
MCO12G401 Micromonas commoda HOM05D005145 ORTHO05D006062 5.0e-09 64.3 65 41.5
CBR_g29659 Chara braunii HOM05D000371 ORTHO05D001484 2.3e-06 55.5 79 36.7
SEGI_29388 Sequoiadendron giganteum HOM05D000371 ORTHO05D001484 2.3e-06 55.5 80 41.2
PRCOL_00004628 Prasinoderma coloniale HOM05D001046 ORTHO05D002934 3.0e-06 55.1 74 36.5
CiPaw.01G113200 Carya illinoinensis HOM05D000371 ORTHO05D001484 3.9e-06 54.7 73 43.8
ECA248G1653 Erigeron canadensis HOM05D000371 ORTHO05D001484 3.9e-06 54.7 77 39.0
Lj4A73G44 Lonicera japonica HOM05D000371 ORTHO05D001484 8.7e-06 53.5 76 38.2


User provided reference genes

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