Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04800 Brassica carinata HOM05D004269 ORTHO05D013520 6.7e-157 557.4 295 100.0
C04p14230 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-68 263.8 141 99.3
BolC5t30237H Brassica oleracea HOM05D004269 ORTHO05D013520 1.5e-68 263.8 141 99.3
C01p38510 Brassica napus HOM05D004269 ORTHO05D013520 3.4e-68 262.7 141 98.6
BolC5t33714H Brassica oleracea HOM05D004269 ORTHO05D013520 7.6e-68 261.5 141 98.6
C05p46330 Brassica napus HOM05D004269 ORTHO05D013520 4.9e-67 258.8 141 97.2
C02p38620 Brassica napus HOM05D004269 ORTHO05D013520 6.4e-67 258.5 141 97.9
BcaC05g28037 Brassica carinata HOM05D004269 ORTHO05D013520 2.7e-65 253.1 147 93.9
C05p40550 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-55 220.7 118 97.5
BolC5t33363H Brassica oleracea HOM05D004269 ORTHO05D013520 6.2e-54 215.3 121 97.5
C07p30140 Brassica napus HOM05D004269 ORTHO05D013520 3.1e-53 213.0 118 98.3
BolC6t36588H Brassica oleracea HOM05D004269 ORTHO05D013520 1.4e-50 204.1 114 95.6
BcaC06g34343 Brassica carinata HOM05D004269 ORTHO05D013520 1.5e-36 157.5 79 98.7
C04p65960 Brassica napus HOM05D004269 ORTHO05D007106 6.5e-35 152.1 139 67.6
BraA04t18341Z Brassica rapa HOM05D004269 ORTHO05D007106 2.7e-33 146.7 131 67.2
A04p28640 Brassica napus HOM05D004269 ORTHO05D007106 1.4e-32 144.4 131 66.4
BolC4t28100H Brassica oleracea HOM05D004269 ORTHO05D007106 1.4e-32 144.4 131 66.4
BcaB06g28999 Brassica carinata HOM05D004269 ORTHO05D007106 1.1e-31 141.4 133 66.9
BcaC02g11857 Brassica carinata HOM05D004269 ORTHO05D007106 6.3e-30 135.6 131 62.6
A05p08460 Brassica napus HOM05D004269 ORTHO05D007106 6.3e-30 135.6 131 62.6
C04p10550 Brassica napus HOM05D004269 ORTHO05D007106 6.3e-30 135.6 131 62.6
BraA05t19815Z Brassica rapa HOM05D004269 ORTHO05D007106 6.3e-30 135.6 131 62.6
Thhalv10016608m.g Eutrema salsugineum HOM05D004269 ORTHO05D007106 6.3e-30 135.6 131 63.4
Carub.0004s1942 Capsella rubella HOM05D004269 ORTHO05D007106 2.4e-29 133.7 131 61.8
Sp4g19820 Schrenkiella parvula HOM05D004269 ORTHO05D007106 7.0e-29 132.1 130 62.3
AL4G33990 Arabidopsis lyrata HOM05D004269 ORTHO05D007106 1.2e-28 131.3 131 61.8
BcaB02g09282 Brassica carinata HOM05D004269 ORTHO05D007106 5.0e-27 125.9 131 61.1
BolC4t22646H Brassica oleracea HOM05D004269 ORTHO05D007106 6.5e-27 125.6 128 62.5
CARHR132110 Cardamine hirsuta HOM05D004269 ORTHO05D007106 8.5e-27 125.2 132 58.3
C06p14100 Brassica napus HOM05D004269 ORTHO05D013520 1.5e-26 124.4 67 98.5
BcaC07g37609 Brassica carinata HOM05D004269 ORTHO05D013520 1.0e-24 118.2 57 100.0
Aa31LG5G19670 Aethionema arabicum HOM05D004269 ORTHO05D007106 2.3e-24 117.1 131 56.5
C02p59220 Brassica napus HOM05D004269 ORTHO05D013520 1.7e-22 110.9 69 82.6
THA.LOC104815237 Tarenaya hassleriana HOM05D004269 ORTHO05D007106 3.7e-22 109.8 131 51.9
HanXRQChr14g0453741 Helianthus annuus HOM05D004269 ORTHO05D007106 4.7e-17 92.8 133 46.6
Ciclev10011653m.g Citrus clementina HOM05D004269 ORTHO05D007106 2.3e-16 90.5 129 48.1
ECA238G4253 Erigeron canadensis HOM05D004269 ORTHO05D007106 8.8e-16 88.6 134 47.0
TWI74G1158 Tripterygium wilfordii HOM05D004269 ORTHO05D007106 4.4e-15 86.3 111 50.5
AT2G37500 Arabidopsis thaliana HOM05D004269 ORTHO05D007106 7.5e-15 85.5 70 72.9
TAR369G0704 Trochodendron aralioides HOM05D004269 ORTHO05D007106 9.7e-15 85.1 133 46.6
vmacro08669 Vaccinium macrocarpon HOM05D004269 ORTHO05D007106 3.7e-14 83.2 104 50.0
Actinidia05298 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.1e-13 81.6 148 41.9
Rhsim04G0153900 Rhododendron simsii HOM05D004269 ORTHO05D007106 1.1e-13 81.6 104 50.0
Sed0027746 Sechium edule HOM05D004269 ORTHO05D007106 1.1e-13 81.6 120 49.2
CSS0004421 Camellia sinensis var. sinensis HOM05D004269 ORTHO05D007106 2.4e-13 80.5 110 47.3
CsaV3_3G035070 Cucumis sativus L. HOM05D004269 ORTHO05D007106 2.4e-13 80.5 119 45.4
Thecc.05G044300 Theobroma cacao HOM05D004269 ORTHO05D007106 2.4e-13 80.5 126 45.2
TAR623G0301 Trochodendron aralioides HOM05D004269 ORTHO05D007106 3.1e-13 80.1 64 68.8
Lj2C99G10 Lonicera japonica HOM05D004269 ORTHO05D007106 4.1e-13 79.7 137 41.6
Cpa.g.sc11.168 Carica papaya HOM05D004269 ORTHO05D007106 5.3e-13 79.3 104 49.0
ClCG10G020940 Citrullus lanatus HOM05D004269 ORTHO05D007106 5.3e-13 79.3 119 44.5
MELO3C009277.2 Cucumis melo HOM05D004269 ORTHO05D007106 5.3e-13 79.3 148 39.9
Lsat_1_v5_gn_2_110500 Lactuca sativa HOM05D004269 ORTHO05D007106 7.0e-13 79.0 132 43.9
Nn2g10437 Nelumbo nucifera HOM05D004269 ORTHO05D007106 7.0e-13 79.0 133 45.9
Solyc09g010420.4 Solanum lycopersicum HOM05D004269 ORTHO05D007106 7.0e-13 79.0 131 42.7
TAR623G0331 Trochodendron aralioides HOM05D004269 ORTHO05D007106 7.0e-13 79.0 64 67.2
PSO206G0015 Papaver somniferum HOM05D004269 ORTHO05D007106 1.2e-12 78.2 64 67.2
Atru.chr8.1955 Acer truncatum HOM05D004269 ORTHO05D007106 1.6e-12 77.8 126 42.1
Actinidia13128 Actinidia chinensis HOM05D004269 ORTHO05D007106 1.6e-12 77.8 109 45.9
CAN.G97.19 Capsicum annuum HOM05D004269 ORTHO05D007106 1.6e-12 77.8 134 42.5
Cc06_g02960 Coffea canephora HOM05D004269 ORTHO05D007106 1.6e-12 77.8 132 44.7
PSO339G5566 Papaver somniferum HOM05D004269 ORTHO05D007106 1.6e-12 77.8 64 67.2
Lalb_Chr06g0171031 Lupinus albus HOM05D004269 ORTHO05D007106 2.0e-12 77.4 126 42.9
PGSC0003DMG400008852 Solanum tuberosum HOM05D004269 ORTHO05D007106 2.0e-12 77.4 131 42.0
ATR0559G147 Amborella trichopoda HOM05D004269 ORTHO05D007106 2.7e-12 77.0 86 53.5
Dinv35635 Davidia involucrata HOM05D004269 ORTHO05D007106 2.7e-12 77.0 106 49.1
QL05p010548 Quercus lobata HOM05D004269 ORTHO05D007106 2.7e-12 77.0 142 45.8
Aqoxy2G02034 Aquilegia oxysepala HOM05D004269 ORTHO05D007106 4.5e-12 76.3 64 62.5
AUR62031166 Chenopodium quinoa HOM05D004269 ORTHO05D007106 4.5e-12 76.3 138 42.0
Dinv37204 Davidia involucrata HOM05D004269 ORTHO05D007106 4.5e-12 76.3 133 42.9
Hund02377 Selenicereus undatus HOM05D004269 ORTHO05D007106 4.5e-12 76.3 107 47.7
Sopen09g005160 Solanum pennellii HOM05D004269 ORTHO05D007106 4.5e-12 76.3 131 42.0
Sc20g0004610 Simmondsia chinensis HOM05D004269 ORTHO05D007106 5.9e-12 75.9 111 48.6
QL07p047335 Quercus lobata HOM05D004269 ORTHO05D007106 7.7e-12 75.5 142 45.8
Ca_09614_v3 Cicer arietinum L. HOM05D004269 ORTHO05D007106 1.0e-11 75.1 130 43.1
MD04G1121900 Malus domestica HOM05D004269 ORTHO05D007106 1.3e-11 74.7 64 65.6
Peaxi162Scf00039g01234 Petunia axillaris HOM05D004269 ORTHO05D007106 1.3e-11 74.7 64 62.5
QL09p012946 Quercus lobata HOM05D004269 ORTHO05D007106 1.3e-11 74.7 131 42.7
arahy.Tifrunner.gnm1.ann1.5YT5MY Arachis hypogaea HOM05D004269 ORTHO05D007106 1.7e-11 74.3 64 62.5
Gohir.D09G153600 Gossypium hirsutum HOM05D004269 ORTHO05D007106 1.7e-11 74.3 128 42.2
Gorai.006G175100 Gossypium raimondii HOM05D004269 ORTHO05D007106 1.7e-11 74.3 128 42.2
MBI14_g24308_MAGBIO Magnolia biondii HOM05D004269 ORTHO05D007106 1.7e-11 74.3 64 64.1
Cfa017428 Carpinus fangiana HOM05D004269 ORTHO05D007106 2.2e-11 73.9 118 46.6
Haze_20743 Corylus avellana HOM05D004269 ORTHO05D007106 2.2e-11 73.9 118 46.6
Duzib128G0641 Durio zibethinus HOM05D004269 ORTHO05D007106 2.2e-11 73.9 105 47.6
Medtr1g068845 Medicago truncatula HOM05D004269 ORTHO05D007106 2.2e-11 73.9 130 43.1
Nitab4.5_0002077g0090 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.2e-11 73.9 64 62.5
Nitab4.5_0009149g0030 Nicotiana tabacum HOM05D004269 ORTHO05D007106 2.2e-11 73.9 64 62.5
Hma1.2p1_1535F.1_g289500 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 2.9e-11 73.6 64 64.1
Lj5g0017615 Lotus japonicus HOM05D004269 ORTHO05D007106 2.9e-11 73.6 64 65.6
Manes.09G086800 Manihot esculenta HOM05D004269 ORTHO05D007106 2.9e-11 73.6 61 63.9
arahy.Tifrunner.gnm1.ann1.FJP50F Arachis hypogaea HOM05D004269 ORTHO05D007106 3.8e-11 73.2 64 60.9
FvH4_6g14300 Fragaria vesca HOM05D004269 ORTHO05D007106 3.8e-11 73.2 64 60.9
FAN14G0717 Fragaria x ananassa HOM05D004269 ORTHO05D007106 3.8e-11 73.2 64 60.9
Os03g0279400 Oryza sativa ssp. japonica HOM05D004269 ORTHO05D007106 3.8e-11 73.2 64 62.5
Pp3c9_2270 Physcomitrium patens HOM05D004269 ORTHO05D007106 3.8e-11 73.2 64 60.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 3.8e-11 73.2 132 41.7
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 5.0e-11 72.8 64 62.5
Glyma.10G044300 Glycine max HOM05D004269 ORTHO05D007106 5.0e-11 72.8 127 45.7
Glyma.13G131900 Glycine max HOM05D004269 ORTHO05D007106 5.0e-11 72.8 133 43.6
MSTRG.19100 Avicennia marina HOM05D004269 ORTHO05D007106 6.5e-11 72.4 64 62.5
EL10Ac8g18791 Beta vulgaris HOM05D004269 ORTHO05D007106 6.5e-11 72.4 133 40.6
Psat6g067760 Pisum sativum HOM05D004269 ORTHO05D007106 6.5e-11 72.4 137 38.7
RcHm_v2.0_Chr3g0467271 Rosa chinensis HOM05D004269 ORTHO05D007106 6.5e-11 72.4 122 42.6
AUR62036580 Chenopodium quinoa HOM05D004269 ORTHO05D007106 8.5e-11 72.0 64 60.9
Gohir.A09G158200 Gossypium hirsutum HOM05D004269 ORTHO05D007106 8.5e-11 72.0 128 40.6
Phvul.007G158000 Phaseolus vulgaris HOM05D004269 ORTHO05D007106 8.5e-11 72.0 64 62.5
SalBow3G0454 Salvia bowleyana HOM05D004269 ORTHO05D007106 8.5e-11 72.0 58 69.0
Migut.J00361 Erythranthe guttata HOM05D004269 ORTHO05D007106 1.1e-10 71.6 64 60.9
MD12G1138500 Malus domestica HOM05D004269 ORTHO05D007106 1.1e-10 71.6 64 62.5
arahy.Tifrunner.gnm1.ann1.L55DKK Arachis hypogaea HOM05D004269 ORTHO05D007106 1.5e-10 71.2 64 60.9
Prupe.6G250400 Prunus persica HOM05D004269 ORTHO05D007106 1.5e-10 71.2 64 60.9
GSVIVG01025529001 Vitis vinifera HOM05D004269 ORTHO05D007106 1.5e-10 71.2 109 44.0
CANSAT56G4185 Cannabis sativa HOM05D004269 ORTHO05D007106 1.9e-10 70.9 64 62.5
DCAR_009253 Daucus carota HOM05D004269 ORTHO05D007106 1.9e-10 70.9 129 41.9
FAN02G4217 Fragaria x ananassa HOM05D004269 ORTHO05D007106 1.9e-10 70.9 64 59.4
SMO347G0094 Selaginella moellendorffii HOM05D004269 ORTHO05D007106 1.9e-10 70.9 80 52.5
Potri.012G115900 Populus trichocarpa HOM05D004269 ORTHO05D007106 2.5e-10 70.5 64 60.9
Sabra12G0084000 Salix brachista HOM05D004269 ORTHO05D007106 2.5e-10 70.5 64 60.9
SGA_v2.0_scaffold75G24934 Striga asiatica HOM05D004269 ORTHO05D007106 2.5e-10 70.5 127 39.4
VMungo0720G1352 Vigna mungo HOM05D004269 ORTHO05D007106 3.2e-10 70.1 64 60.9
Mapoly0082s0028 Marchantia polymorpha HOM05D004269 ORTHO05D007106 4.2e-10 69.7 64 60.9
unitig_578.g15701 Utricularia gibba HOM05D004269 ORTHO05D007106 5.5e-10 69.3 69 58.0
EL10Ac7g17097 Beta vulgaris HOM05D004269 ORTHO05D007106 7.2e-10 68.9 123 44.7
CiPaw.09G188900 Carya illinoinensis HOM05D004269 ORTHO05D007106 3.6e-09 66.6 64 57.8
Eucgr.K03158 Eucalyptus grandis HOM05D004269 ORTHO05D007106 6.1e-09 65.9 64 56.2
Hma1.2p1_1004F.1_g246850 Hydrangea macrophylla HOM05D004269 ORTHO05D007106 6.1e-09 65.9 46 73.9
BcaC04g20716 Brassica carinata HOM05D004269 ORTHO05D013520 3.0e-08 63.5 90 45.6
PGR044G1633 Punica granatum HOM05D004269 ORTHO05D007106 3.0e-08 63.5 64 53.1
Potri.015G112400 Populus trichocarpa HOM05D004269 ORTHO05D007106 6.8e-08 62.4 73 53.4
Cre16.g694850 Chlamydomonas reinhardtii HOM05D004269 ORTHO05D007106 1.5e-07 61.2 64 54.7
SHI29092 Sapria himalayana HOM05D004269 ORTHO05D007106 7.5e-07 58.9 64 53.1


User provided reference genes

Program Settings