Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 1.1e-239 832.8 406 100.0
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 1.0e-232 809.7 402 97.0
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 1.0e-232 809.7 402 97.0
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 1.6e-222 775.8 406 95.1
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.1e-215 753.1 402 91.5
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 8.2e-214 746.9 402 90.8
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 1.4e-205 719.5 411 87.1
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 4.0e-200 701.4 424 81.4
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 8.3e-190 667.2 422 78.7
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 3.0e-171 605.5 419 72.6
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 6.6e-171 604.4 425 72.0
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 2.3e-168 595.9 415 71.1
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 6.4e-166 587.8 417 70.7
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 1.9e-154 549.7 412 66.3
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 6.0e-148 528.1 413 63.4
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 2.5e-130 469.5 443 55.3
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 7.4e-130 468.0 443 55.1
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 1.8e-115 420.2 445 51.0
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 6.7e-115 418.3 436 50.9
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 8.7e-115 417.9 455 49.9
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 1.1e-114 417.5 443 50.3
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 1.6e-113 413.7 453 48.3
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 2.2e-113 413.3 446 50.2
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 2.8e-113 412.9 440 50.2
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 2.0e-111 406.8 432 49.8
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 2.6e-111 406.4 427 49.6
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 1.7e-110 403.7 448 48.2
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.2e-110 403.3 458 48.5
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.9e-110 402.9 454 47.8
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 8.5e-110 401.4 443 50.1
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 1.4e-109 400.6 453 46.1
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 2.5e-109 399.8 440 49.5
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 3.2e-109 399.4 443 49.4
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 4.2e-109 399.1 453 46.1
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 5.5e-109 398.7 438 49.5
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 7.2e-109 398.3 453 47.5
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 9.4e-109 397.9 453 48.3
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.2e-108 397.5 454 47.4
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.6e-108 397.1 453 48.1
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.0e-107 394.4 453 45.9
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 3.0e-107 392.9 443 49.2
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 3.9e-107 392.5 453 45.7
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 5.1e-107 392.1 446 47.1
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 2.0e-106 390.2 441 46.7
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 3.3e-106 389.4 459 45.5
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 1.3e-105 387.5 452 45.8
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 8.2e-105 384.8 452 47.1
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 1.1e-104 384.4 453 46.1
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.8e-104 383.6 461 47.1
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 9.1e-104 381.3 459 46.8
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 1.2e-103 380.9 452 44.7
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 1.5e-103 380.6 451 45.2
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 5.9e-103 378.6 440 47.5
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 7.7e-103 378.3 458 45.9
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 1.3e-102 377.5 437 48.1
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 1.3e-102 377.5 460 46.7
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 2.9e-102 376.3 455 47.0
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.8e-102 375.9 451 47.0
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 8.5e-102 374.8 458 46.7
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.1e-101 374.4 454 46.5
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 3.2e-101 372.9 473 42.7
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 3.2e-101 372.9 458 46.3
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 9.4e-101 371.3 462 44.6
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 9.4e-101 371.3 442 45.2
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 1.2e-100 370.9 450 46.7
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.6e-100 370.5 459 46.6
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 1.6e-100 370.5 438 47.9
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 2.1e-100 370.2 445 46.1
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.7e-100 369.0 455 46.2
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.0e-99 367.9 446 47.3
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 1.4e-99 367.5 455 46.2
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 1.8e-99 367.1 441 46.0
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 3.0e-99 366.3 465 43.2
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 1.5e-98 364.0 434 44.9
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 3.3e-98 362.8 429 46.9
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 5.7e-98 362.1 432 44.9
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 3.7e-97 359.4 431 43.2
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 9.1e-96 354.8 455 45.3
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 1.3e-94 350.9 436 43.3
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 2.5e-93 346.7 429 43.8
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 3.9e-91 339.3 446 42.8
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 2.0e-90 337.0 444 43.7
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 4.4e-90 335.9 442 43.9
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 1.7e-89 334.0 418 43.5
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 4.8e-89 332.4 452 41.6
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 4.8e-89 332.4 450 43.6
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 3.5e-87 326.2 432 41.0
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 8.5e-86 321.6 417 42.4
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 1.5e-85 320.9 483 39.3
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 6.1e-84 315.5 426 41.3
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.3e-83 313.5 418 43.3
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 2.2e-81 307.0 416 42.3
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 6.3e-81 305.4 446 40.4
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 1.4e-80 304.3 450 40.4
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 3.8e-78 296.2 297 51.9
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 2.8e-73 280.0 400 40.2
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 6.6e-70 268.9 428 38.8
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 8.6e-70 268.5 339 42.5
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 4.7e-68 262.7 480 35.2
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 3.7e-57 226.5 313 42.2
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 6.6e-54 215.7 278 43.5
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.1e-53 214.9 217 50.2
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 1.6e-52 211.1 294 43.2
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 1.6e-52 211.1 515 30.1
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 3.7e-49 199.9 319 37.3
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 3.5e-47 193.4 421 31.4
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 1.2e-42 178.3 221 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 8.6e-38 162.2 461 26.5
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 1.1e-37 161.8 217 42.9
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.9e-29 134.4 99 58.6
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 3.3e-29 133.7 430 26.0
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.1e-28 131.0 186 42.5
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 6.0e-23 112.8 100 56.0
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 8.7e-22 109.0 149 40.9
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 1.5e-18 98.2 217 32.3
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 2.0e-18 97.8 128 43.0
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.2e-16 90.5 65 56.9
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 4.2e-16 90.1 97 49.5
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 3.7e-12 77.0 91 47.3
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 1.1e-11 75.5 114 40.4
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 2.9e-09 67.4 63 55.6
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.4e-08 65.1 88 42.0
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 9.3e-08 62.4 159 29.6
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 1.3e-06 58.5 65 46.2


User provided reference genes

Program Settings