Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04766 Brassica carinata HOM05D002114 ORTHO05D002155 2.2e-177 625.5 322 100.0
BolC3t15712H Brassica oleracea HOM05D002114 ORTHO05D002155 3.0e-150 535.4 370 79.7
BcaC01g04770 Brassica carinata HOM05D002114 ORTHO05D002155 8.1e-148 527.3 370 79.2
BcaC01g04768 Brassica carinata HOM05D002114 ORTHO05D002155 5.8e-146 521.2 367 78.7
BolC3t15708H Brassica oleracea HOM05D002114 ORTHO05D002155 7.6e-146 520.8 368 78.8
BcaC01g04764 Brassica carinata HOM05D002114 ORTHO05D002155 8.4e-145 517.3 372 78.2
BcaC01g04769 Brassica carinata HOM05D002114 ORTHO05D002155 4.3e-141 505.0 358 79.1
BcaC01g04767 Brassica carinata HOM05D002114 ORTHO05D002155 5.8e-130 468.0 333 78.7
C03p33960 Brassica napus HOM05D002114 ORTHO05D002155 1.5e-109 400.2 263 84.4
C03p34000 Brassica napus HOM05D002114 ORTHO05D002155 1.5e-109 400.2 263 84.4
BolC3t15709H Brassica oleracea HOM05D002114 ORTHO05D002155 2.2e-108 396.4 303 73.9
C03p34010 Brassica napus HOM05D002114 ORTHO05D002155 8.5e-89 331.3 230 77.8
BcaB01g02856 Brassica carinata HOM05D002114 ORTHO05D002155 1.6e-87 327.0 433 52.4
BcaB01g02858 Brassica carinata HOM05D002114 ORTHO05D002155 8.0e-87 324.7 387 54.0
Sp6g09350 Schrenkiella parvula HOM05D002114 ORTHO05D002155 1.9e-72 276.9 463 46.0
BraA03t12024Z Brassica rapa HOM05D002114 ORTHO05D002155 1.3e-68 264.2 425 48.0
BcaC01g04761 Brassica carinata HOM05D002114 ORTHO05D002155 2.2e-68 263.5 414 48.6
BcaC01g04763 Brassica carinata HOM05D002114 ORTHO05D002155 2.2e-68 263.5 414 48.6
C03p34070 Brassica napus HOM05D002114 ORTHO05D002155 4.9e-68 262.3 414 48.3
BolC3t15714H Brassica oleracea HOM05D002114 ORTHO05D002155 4.9e-68 262.3 414 48.3
BolC3t15717H Brassica oleracea HOM05D002114 ORTHO05D002155 4.9e-68 262.3 414 48.3
A03p28160 Brassica napus HOM05D002114 ORTHO05D002155 9.2e-67 258.1 414 48.1
A03p28080 Brassica napus HOM05D002114 ORTHO05D002155 1.6e-66 257.3 411 47.9
Thhalv10028540m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 6.6e-65 251.9 456 44.7
AL6G42320 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 7.3e-56 221.9 454 42.1
AT4G08510 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 1.6e-55 220.7 455 41.5
BraA03t12021Z Brassica rapa HOM05D002114 ORTHO05D002155 1.1e-54 218.0 307 52.1
BolC3t15707H Brassica oleracea HOM05D002114 ORTHO05D002155 5.2e-54 215.7 121 95.0
A03p28090 Brassica napus HOM05D002114 ORTHO05D002155 1.1e-51 208.0 121 91.7
A03p28100 Brassica napus HOM05D002114 ORTHO05D002155 2.7e-50 203.4 186 63.4
BraA03t12023Z Brassica rapa HOM05D002114 ORTHO05D002155 3.5e-50 203.0 279 51.6
THA.LOC104806809 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 3.9e-49 199.5 475 38.1
THA.LOC104813131 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 8.6e-49 198.4 473 37.8
CARHR259540 Cardamine hirsuta HOM05D002114 ORTHO05D002155 1.9e-48 197.2 444 38.7
Sp1g31190 Schrenkiella parvula HOM05D002114 ORTHO05D002155 3.3e-48 196.4 462 38.1
Thhalv10003900m.g Eutrema salsugineum HOM05D002114 ORTHO05D002155 4.3e-48 196.1 462 38.5
BcaB01g02859 Brassica carinata HOM05D002114 ORTHO05D002155 1.6e-47 194.1 286 47.6
Carub.0006s2705 Capsella rubella HOM05D002114 ORTHO05D002155 2.1e-47 193.7 462 37.9
CARHR034770 Cardamine hirsuta HOM05D002114 ORTHO05D002155 1.1e-46 191.4 450 37.8
AL1G51130 Arabidopsis lyrata HOM05D002114 ORTHO05D002155 5.2e-46 189.1 465 37.2
BcaB07g33990 Brassica carinata HOM05D002114 ORTHO05D002155 5.2e-46 189.1 455 37.4
BcaB07g33077 Brassica carinata HOM05D002114 ORTHO05D002155 1.3e-44 184.5 458 36.9
BolC3t15711H Brassica oleracea HOM05D002114 ORTHO05D002155 2.9e-44 183.3 130 80.0
Aa31LG6G9080 Aethionema arabicum HOM05D002114 ORTHO05D002155 2.4e-43 180.3 466 35.4
THA.LOC104817001 Tarenaya hassleriana HOM05D002114 ORTHO05D002155 3.2e-43 179.9 477 37.3
BcaC08g43755 Brassica carinata HOM05D002114 ORTHO05D002155 1.3e-41 174.5 460 36.3
BolC6t36266H Brassica oleracea HOM05D002114 ORTHO05D002155 1.3e-41 174.5 460 36.3
C06p11320 Brassica napus HOM05D002114 ORTHO05D002155 6.6e-41 172.2 458 36.7
AT1G36990 Arabidopsis thaliana HOM05D002114 ORTHO05D002155 7.3e-40 168.7 465 35.1
BolC3t15713H Brassica oleracea HOM05D002114 ORTHO05D002155 1.6e-39 167.5 89 100.0
C03p33970 Brassica napus HOM05D002114 ORTHO05D002155 2.2e-36 157.1 75 100.0
C03p33980 Brassica napus HOM05D002114 ORTHO05D002155 3.8e-36 156.4 96 85.4
C03p33990 Brassica napus HOM05D002114 ORTHO05D002155 1.9e-32 144.1 68 100.0
C03p33950 Brassica napus HOM05D002114 ORTHO05D002155 1.3e-31 141.4 68 98.5
BolC3t15710H Brassica oleracea HOM05D002114 ORTHO05D002155 2.3e-25 120.6 158 51.3
A03p28070 Brassica napus HOM05D002114 ORTHO05D002155 3.6e-23 113.2 114 61.4
Atru.chr13.1319 Acer truncatum HOM05D002114 ORTHO05D002155 5.3e-22 109.4 486 28.4
Atru.chr13.1363 Acer truncatum HOM05D002114 ORTHO05D002155 5.3e-22 109.4 486 28.4
Carub.0145s0001 Capsella rubella HOM05D002114 ORTHO05D002155 1.5e-21 107.8 238 39.9
Potri.002G089100 Populus trichocarpa HOM05D002114 ORTHO05D002155 1.3e-20 104.8 457 29.1
Cpa.g.sc49.129 Carica papaya HOM05D002114 ORTHO05D002155 6.0e-18 95.9 470 28.9
Sabra05G0129600 Salix brachista HOM05D002114 ORTHO05D002155 7.9e-18 95.5 461 27.8
Ciclev10000635m.g Citrus clementina HOM05D002114 ORTHO05D002155 3.9e-17 93.2 484 26.7
Sabra02G0070100 Salix brachista HOM05D002114 ORTHO05D002155 6.7e-17 92.4 456 28.3
CiPaw.05G228500 Carya illinoinensis HOM05D002114 ORTHO05D002155 8.7e-17 92.0 485 28.5
Phvul.008G168200 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 8.7e-17 92.0 488 27.9
VMungo0647G0374 Vigna mungo HOM05D002114 ORTHO05D002155 3.3e-16 90.1 492 26.2
Glyma.13G084300 Glycine max HOM05D002114 ORTHO05D002155 4.3e-16 89.7 491 26.3
Duzib041G0185 Durio zibethinus HOM05D002114 ORTHO05D002155 5.6e-16 89.4 342 30.1
Gohir.D05G270000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 5.6e-16 89.4 337 30.6
Thecc.08G117100 Theobroma cacao HOM05D002114 ORTHO05D002155 9.6e-16 88.6 339 31.0
COL.COLO4_32807 Corchorus olitorius HOM05D002114 ORTHO05D002155 2.1e-15 87.4 356 30.9
Potri.005G172100 Populus trichocarpa HOM05D002114 ORTHO05D002155 2.1e-15 87.4 461 28.4
Glyma.14G166100 Glycine max HOM05D002114 ORTHO05D002155 3.7e-15 86.7 492 25.8
Gorai.009G282700 Gossypium raimondii HOM05D002114 ORTHO05D002155 1.4e-14 84.7 489 26.0
CANSAT25G3390 Cannabis sativa HOM05D002114 ORTHO05D002155 1.8e-14 84.3 480 27.3
MD08G1173100 Malus domestica HOM05D002114 ORTHO05D002155 1.8e-14 84.3 477 27.5
Gorai.005G091900 Gossypium raimondii HOM05D002114 ORTHO05D002155 4.0e-14 83.2 351 29.3
Gohir.D02G082000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 9.0e-14 82.0 351 29.1
PGSC0003DMG400030206 Solanum tuberosum HOM05D002114 ORTHO05D002155 9.0e-14 82.0 481 26.4
Duzib093G1968 Durio zibethinus HOM05D002114 ORTHO05D002155 1.5e-13 81.3 134 42.5
C03p34030 Brassica napus HOM05D002114 ORTHO05D002155 2.0e-13 80.9 45 86.7
Nitab4.5_0002332g0040 Nicotiana tabacum HOM05D002114 ORTHO05D002155 3.4e-13 80.1 481 26.6
Sopen11g008720 Solanum pennellii HOM05D002114 ORTHO05D002155 7.6e-13 79.0 470 26.8
Nitab4.5_0000051g0060 Nicotiana tabacum HOM05D002114 ORTHO05D002155 1.0e-12 78.6 480 26.7
ClCG03G009150 Citrullus lanatus HOM05D002114 ORTHO05D002155 1.3e-12 78.2 481 25.8
Peaxi162Scf00476g00627 Petunia axillaris HOM05D002114 ORTHO05D002155 1.3e-12 78.2 470 27.2
Gohir.A06G041100 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.7e-12 77.8 208 35.1
Manes.02G158800 Manihot esculenta HOM05D002114 ORTHO05D002155 3.8e-12 76.6 116 43.1
Gohir.A05G268400 Gossypium hirsutum HOM05D002114 ORTHO05D002155 4.9e-12 76.3 203 36.0
Duzib116G0235 Durio zibethinus HOM05D002114 ORTHO05D002155 8.4e-12 75.5 208 33.7
Gohir.D06G042000 Gossypium hirsutum HOM05D002114 ORTHO05D002155 1.1e-11 75.1 204 33.8
Gorai.010G047200 Gossypium raimondii HOM05D002114 ORTHO05D002155 1.1e-11 75.1 204 33.8
Manes.18G072900 Manihot esculenta HOM05D002114 ORTHO05D002155 1.9e-11 74.3 116 41.4
FAN04G2397 Fragaria x ananassa HOM05D002114 ORTHO05D002155 2.5e-11 73.9 126 40.5
Gohir.A01G187750 Gossypium hirsutum HOM05D002114 ORTHO05D002155 2.5e-11 73.9 204 34.8
TWI56G1477 Tripterygium wilfordii HOM05D002114 ORTHO05D002155 2.5e-11 73.9 485 25.4
FvH4_5g38960 Fragaria vesca HOM05D002114 ORTHO05D002155 3.2e-11 73.6 127 41.7
FAN18G0458 Fragaria x ananassa HOM05D002114 ORTHO05D002155 3.2e-11 73.6 127 41.7
FAN08G3544 Fragaria x ananassa HOM05D002114 ORTHO05D002155 4.2e-11 73.2 126 39.7
FAN13G1068 Fragaria x ananassa HOM05D002114 ORTHO05D002155 4.2e-11 73.2 126 39.7
Ca_26445_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 5.5e-11 72.8 134 38.1
Prupe.1G505900 Prunus persica HOM05D002114 ORTHO05D002155 7.1e-11 72.4 195 34.9
CAN.G935.3 Capsicum annuum HOM05D002114 ORTHO05D002155 9.3e-11 72.0 483 26.1
Gohir.A02G074900 Gossypium hirsutum HOM05D002114 ORTHO05D002155 9.3e-11 72.0 130 40.0
Gorai.002G220500 Gossypium raimondii HOM05D002114 ORTHO05D002155 9.3e-11 72.0 208 33.7
Medtr5g060420 Medicago truncatula HOM05D002114 ORTHO05D002155 9.3e-11 72.0 134 38.1
Cfa015960 Carpinus fangiana HOM05D002114 ORTHO05D002155 1.2e-10 71.6 131 37.4
RcHm_v2.0_Chr7g0240931 Rosa chinensis HOM05D002114 ORTHO05D002155 1.2e-10 71.6 123 42.3
Actinidia03497 Actinidia chinensis HOM05D002114 ORTHO05D002155 2.1e-10 70.9 124 38.7
Psat0s411g0160 Pisum sativum HOM05D002114 ORTHO05D002155 2.1e-10 70.9 134 35.8
QL12p035256 Quercus lobata HOM05D002114 ORTHO05D002155 2.7e-10 70.5 130 40.8
HanXRQChr06g0185041 Helianthus annuus HOM05D002114 ORTHO05D002155 3.5e-10 70.1 326 27.6
Phvul.008G168300 Phaseolus vulgaris HOM05D002114 ORTHO05D002155 3.5e-10 70.1 134 35.8
TWI36G1025 Tripterygium wilfordii HOM05D002114 ORTHO05D002155 3.5e-10 70.1 483 24.6
arahy.Tifrunner.gnm1.ann1.6TI2WT Arachis hypogaea HOM05D002114 ORTHO05D002155 4.6e-10 69.7 125 40.8
Gohir.D01G181801 Gossypium hirsutum HOM05D002114 ORTHO05D002155 6.0e-10 69.3 208 33.2
vmacro00796 Vaccinium macrocarpon HOM05D002114 ORTHO05D002155 6.0e-10 69.3 115 37.4
GSVIVG01008941001 Vitis vinifera HOM05D002114 ORTHO05D002155 6.0e-10 69.3 314 29.3
Lj1g0012616 Lotus japonicus HOM05D002114 ORTHO05D002155 7.9e-10 68.9 138 36.2
TPR.G30411 Trifolium pratense HOM05D002114 ORTHO05D002155 7.9e-10 68.9 133 36.8
arahy.Tifrunner.gnm1.ann1.KNS6CZ Arachis hypogaea HOM05D002114 ORTHO05D002155 1.0e-09 68.6 125 40.8
CiPaw.06G025100 Carya illinoinensis HOM05D002114 ORTHO05D002155 1.0e-09 68.6 129 39.5
Actinidia29430 Actinidia chinensis HOM05D002114 ORTHO05D002155 1.3e-09 68.2 126 38.1
Dinv26715 Davidia involucrata HOM05D002114 ORTHO05D002155 3.0e-09 67.0 130 36.9
MD15G1358400 Malus domestica HOM05D002114 ORTHO05D002155 3.9e-09 66.6 279 28.7
Sc23g0001290 Simmondsia chinensis HOM05D002114 ORTHO05D002155 3.9e-09 66.6 125 36.8
VMungo0647G0978 Vigna mungo HOM05D002114 ORTHO05D002155 3.9e-09 66.6 140 35.7
Migut.C01189 Erythranthe guttata HOM05D002114 ORTHO05D002155 8.7e-09 65.5 170 31.8
Lalb_Chr17g0344021 Lupinus albus HOM05D002114 ORTHO05D002155 8.7e-09 65.5 234 31.2
Solyc11g013760.2 Solanum lycopersicum HOM05D002114 ORTHO05D002155 8.7e-09 65.5 470 24.7
Hma1.2p1_0221F.1_g093190 Hydrangea macrophylla HOM05D002114 ORTHO05D002155 1.1e-08 65.1 122 37.7
Lalb_Chr10g0102001 Lupinus albus HOM05D002114 ORTHO05D002155 1.5e-08 64.7 133 37.6
Rhsim11G0065100 Rhododendron simsii HOM05D002114 ORTHO05D002155 1.5e-08 64.7 113 38.9
Haze_00522 Corylus avellana HOM05D002114 ORTHO05D002155 2.5e-08 63.9 133 36.1
Lj1g0019044 Lotus japonicus HOM05D002114 ORTHO05D002155 3.3e-08 63.5 124 37.1
Lalb_Chr17g0344001 Lupinus albus HOM05D002114 ORTHO05D002155 3.3e-08 63.5 132 38.6
Actinidia23040 Actinidia chinensis HOM05D002114 ORTHO05D002155 4.3e-08 63.2 183 29.0
Cc00_g07850 Coffea canephora HOM05D002114 ORTHO05D002155 4.3e-08 63.2 492 23.4
CsaV3_5G023480 Cucumis sativus L. HOM05D002114 ORTHO05D002155 4.3e-08 63.2 131 36.6
Gohir.A01G176400 Gossypium hirsutum HOM05D002114 ORTHO05D002155 4.3e-08 63.2 333 27.9
Lalb_Chr17g0343991 Lupinus albus HOM05D002114 ORTHO05D002155 4.3e-08 63.2 134 36.6
MELO3C010439.2 Cucumis melo HOM05D002114 ORTHO05D002155 5.7e-08 62.8 128 39.1
ClCG11G015500 Citrullus lanatus HOM05D002114 ORTHO05D002155 7.4e-08 62.4 191 31.9
Gohir.D01G167200 Gossypium hirsutum HOM05D002114 ORTHO05D002155 7.4e-08 62.4 356 26.1
PGR042G3890 Punica granatum HOM05D002114 ORTHO05D002155 7.4e-08 62.4 304 28.3
Sed0025403 Sechium edule HOM05D002114 ORTHO05D002155 7.4e-08 62.4 125 39.2
Thecc.02G041700 Theobroma cacao HOM05D002114 ORTHO05D002155 7.4e-08 62.4 344 28.8
CsaV3_4G028580 Cucumis sativus L. HOM05D002114 ORTHO05D002155 9.6e-08 62.0 128 40.6
DCAR_014283 Daucus carota HOM05D002114 ORTHO05D002155 1.3e-07 61.6 474 23.2
Dinv27382 Davidia involucrata HOM05D002114 ORTHO05D002155 1.3e-07 61.6 129 37.2
arahy.Tifrunner.gnm1.ann1.506V44 Arachis hypogaea HOM05D002114 ORTHO05D002155 1.6e-07 61.2 136 36.0
COL.COLO4_17899 Corchorus olitorius HOM05D002114 ORTHO05D002155 1.6e-07 61.2 142 35.9
Duzib248G0335 Durio zibethinus HOM05D002114 ORTHO05D002155 1.6e-07 61.2 347 26.2
Sed0018069 Sechium edule HOM05D002114 ORTHO05D002155 1.6e-07 61.2 130 34.6
MELO3C022782.2 Cucumis melo HOM05D002114 ORTHO05D002155 2.1e-07 60.8 132 35.6
Sed0005417 Sechium edule HOM05D002114 ORTHO05D002155 2.1e-07 60.8 124 37.9
Gorai.002G207700 Gossypium raimondii HOM05D002114 ORTHO05D002155 2.8e-07 60.5 354 26.8
HanXRQChr02g0058831 Helianthus annuus HOM05D002114 ORTHO05D002155 2.8e-07 60.5 298 26.2
Sc23g0001300 Simmondsia chinensis HOM05D002114 ORTHO05D002155 3.7e-07 60.1 140 31.4
Nn1g08551 Nelumbo nucifera HOM05D002114 ORTHO05D002155 4.8e-07 59.7 147 32.7
Lalb_Chr04g0253291 Lupinus albus HOM05D002114 ORTHO05D002155 6.3e-07 59.3 141 37.6
Rhsim11G0065200 Rhododendron simsii HOM05D002114 ORTHO05D002155 6.3e-07 59.3 143 30.8
arahy.Tifrunner.gnm1.ann1.J4263J Arachis hypogaea HOM05D002114 ORTHO05D002155 8.2e-07 58.9 162 32.7
Lsat_1_v5_gn_9_116241 Lactuca sativa HOM05D002114 ORTHO05D002155 8.2e-07 58.9 323 29.4
TAR624G1393 Trochodendron aralioides HOM05D002114 ORTHO05D002155 8.2e-07 58.9 335 26.6
Sed0020454 Sechium edule HOM05D002114 ORTHO05D002155 1.1e-06 58.5 130 33.8
CSS0028412 Camellia sinensis var. sinensis HOM05D002114 ORTHO05D002155 1.8e-06 57.8 79 49.4
Duzib052G0911 Durio zibethinus HOM05D002114 ORTHO05D002155 1.8e-06 57.8 148 30.4
SGA_v2.0_scaffold24G10503 Striga asiatica HOM05D002114 ORTHO05D002155 3.1e-06 57.0 115 39.1
SGA_v2.0_scaffold28G12028 Striga asiatica HOM05D002114 ORTHO05D002155 3.1e-06 57.0 126 38.1
Glyma.06G108800 Glycine max HOM05D002114 ORTHO05D002155 4.1e-06 56.6 125 35.2
Ca_25760_v3 Cicer arietinum L. HOM05D002114 ORTHO05D002155 6.9e-06 55.8 128 37.5
Hund16822 Selenicereus undatus HOM05D002114 ORTHO05D002155 6.9e-06 55.8 122 35.2
Migut.N03319 Erythranthe guttata HOM05D002114 ORTHO05D002155 9.0e-06 55.5 116 33.6


User provided reference genes

Program Settings