Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04745 Brassica carinata HOM05D004580 ORTHO05D005917 1.2e-230 802.7 388 100.0
C03p34240 Brassica napus HOM05D004580 ORTHO05D005917 5.6e-228 793.9 384 100.0
BolC3t15733H Brassica oleracea HOM05D004580 ORTHO05D005917 5.6e-228 793.9 384 100.0
A03p28330 Brassica napus HOM05D004580 ORTHO05D005917 7.1e-223 776.9 384 97.7
BraA03t12037Z Brassica rapa HOM05D004580 ORTHO05D005917 1.6e-222 775.8 384 97.4
BcaB01g02835 Brassica carinata HOM05D004580 ORTHO05D005917 7.8e-222 773.5 386 96.9
BcaB01g02823 Brassica carinata HOM05D004580 ORTHO05D005917 3.9e-221 771.2 386 96.6
Thhalv10028722m.g Eutrema salsugineum HOM05D004580 ORTHO05D005917 2.9e-216 755.0 389 93.6
BcaB01g02381 Brassica carinata HOM05D004580 ORTHO05D005917 3.5e-214 748.0 389 93.6
Carub.0006s2756 Capsella rubella HOM05D004580 ORTHO05D005917 1.3e-208 729.6 391 89.5
Sp6g08660 Schrenkiella parvula HOM05D004580 ORTHO05D005917 2.9e-208 728.4 388 91.0
AL6G41550 Arabidopsis lyrata HOM05D004580 ORTHO05D005917 5.4e-207 724.2 392 89.0
AT4G08960 Arabidopsis thaliana HOM05D004580 ORTHO05D005917 4.6e-206 721.1 393 89.3
CARHR259970 Cardamine hirsuta HOM05D004580 ORTHO05D005917 1.5e-204 716.1 396 87.6
Aa31LG9G14650 Aethionema arabicum HOM05D004580 ORTHO05D005917 2.8e-203 711.8 384 89.3
C09p37760 Brassica napus HOM05D004580 ORTHO05D005917 5.3e-202 707.6 385 88.1
BolC9t56609H Brassica oleracea HOM05D004580 ORTHO05D005917 5.3e-202 707.6 385 88.1
THA.LOC104813113 Tarenaya hassleriana HOM05D004580 ORTHO05D005917 4.9e-192 674.5 392 84.2
BcaC04g20934 Brassica carinata HOM05D004580 ORTHO05D005917 1.4e-191 672.9 385 85.2
Manes.18G065933 Manihot esculenta HOM05D004580 ORTHO05D005917 5.7e-172 607.8 386 76.4
COL.COLO4_12032 Corchorus olitorius HOM05D004580 ORTHO05D005917 4.8e-171 604.7 392 74.7
Duzib093G0091 Durio zibethinus HOM05D004580 ORTHO05D005917 7.0e-170 600.9 392 74.2
Cfa013658 Carpinus fangiana HOM05D004580 ORTHO05D005917 5.9e-169 597.8 384 74.5
Cpa.g.sc36.160 Carica papaya HOM05D004580 ORTHO05D005917 1.1e-167 593.6 394 73.9
CiPaw.07G178200 Carya illinoinensis HOM05D004580 ORTHO05D005917 2.5e-167 592.4 388 74.5
Ciclev10001487m.g Citrus clementina HOM05D004580 ORTHO05D005917 3.2e-167 592.0 388 72.7
Haze_22292 Corylus avellana HOM05D004580 ORTHO05D005917 1.2e-166 590.1 363 77.1
Atru.chr13.1137 Acer truncatum HOM05D004580 ORTHO05D005917 3.6e-166 588.6 381 73.8
Gorai.010G039500 Gossypium raimondii HOM05D004580 ORTHO05D005917 8.0e-166 587.4 392 72.4
Gohir.A06G034900 Gossypium hirsutum HOM05D004580 ORTHO05D005917 6.7e-165 584.3 392 71.9
MELO3C011036.2 Cucumis melo HOM05D004580 ORTHO05D005917 1.1e-164 583.6 388 72.2
Gohir.D06G035500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 1.1e-164 583.6 392 72.2
Duzib041G0230 Durio zibethinus HOM05D004580 ORTHO05D005917 4.4e-164 581.6 387 72.1
Eucgr.B00032 Eucalyptus grandis HOM05D004580 ORTHO05D005917 5.7e-164 581.3 398 71.4
Lsat_1_v5_gn_4_64561 Lactuca sativa HOM05D004580 ORTHO05D005917 5.7e-164 581.3 365 75.3
TWI12G1022 Tripterygium wilfordii HOM05D004580 ORTHO05D005917 2.8e-163 578.9 367 73.6
Thecc.08G104300 Theobroma cacao HOM05D004580 ORTHO05D005917 3.7e-163 578.6 393 71.2
PGR031G1028 Punica granatum HOM05D004580 ORTHO05D005917 4.8e-163 578.2 388 72.9
CsaV3_2G029780 Cucumis sativus L. HOM05D004580 ORTHO05D005917 8.2e-163 577.4 390 72.1
RcHm_v2.0_Chr1g0321971 Rosa chinensis HOM05D004580 ORTHO05D005917 9.1e-162 573.9 359 75.8
Sed0021368 Sechium edule HOM05D004580 ORTHO05D005917 3.5e-161 572.0 380 72.6
arahy.Tifrunner.gnm1.ann1.UE4JHM Arachis hypogaea HOM05D004580 ORTHO05D005917 1.0e-160 570.5 341 77.7
Potri.005G162900 Populus trichocarpa HOM05D004580 ORTHO05D005917 1.0e-160 570.5 375 74.1
ClCG08G011200 Citrullus lanatus HOM05D004580 ORTHO05D005917 3.8e-160 568.5 363 74.9
Actinidia04333 Actinidia chinensis HOM05D004580 ORTHO05D005917 6.5e-160 567.8 377 73.2
Sabra05G0123100 Salix brachista HOM05D004580 ORTHO05D005917 6.5e-160 567.8 388 71.4
Prupe.1G521000 Prunus persica HOM05D004580 ORTHO05D005917 1.9e-159 566.2 404 70.0
TAR625G1360 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.9e-159 566.2 342 78.1
arahy.Tifrunner.gnm1.ann1.T3Z839 Arachis hypogaea HOM05D004580 ORTHO05D005917 2.5e-159 565.8 342 77.2
Aqoxy7G04111 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 5.5e-159 564.7 338 78.1
Nn5g30036 Nelumbo nucifera HOM05D004580 ORTHO05D005917 5.5e-159 564.7 360 74.4
QL12p037342 Quercus lobata HOM05D004580 ORTHO05D005917 9.4e-159 563.9 361 74.2
Hma1.2p1_0044F.1_g026170 Hydrangea macrophylla HOM05D004580 ORTHO05D005917 2.1e-158 562.8 388 69.3
RcHm_v2.0_Chr7g0243401 Rosa chinensis HOM05D004580 ORTHO05D005917 2.1e-158 562.8 338 78.7
FvH4_6g23990 Fragaria vesca HOM05D004580 ORTHO05D005917 3.6e-158 562.0 383 71.5
FAN14G1039 Fragaria x ananassa HOM05D004580 ORTHO05D005917 3.6e-158 562.0 383 71.5
VMungo1127G0933 Vigna mungo HOM05D004580 ORTHO05D005917 4.7e-158 561.6 359 73.8
MD15G1419400 Malus domestica HOM05D004580 ORTHO05D005917 8.0e-158 560.8 363 73.8
Dinv17643 Davidia involucrata HOM05D004580 ORTHO05D005917 1.4e-157 560.1 346 75.4
HanXRQChr04g0124871 Helianthus annuus HOM05D004580 ORTHO05D005917 1.8e-157 559.7 384 69.5
MD08G1227100 Malus domestica HOM05D004580 ORTHO05D005917 2.3e-157 559.3 349 76.2
CANSAT25G2089 Cannabis sativa HOM05D004580 ORTHO05D005917 6.7e-157 557.8 362 73.8
DCAR_023183 Daucus carota HOM05D004580 ORTHO05D005917 1.7e-155 553.1 377 70.0
Phvul.011G102600 Phaseolus vulgaris HOM05D004580 ORTHO05D005917 1.7e-155 553.1 361 72.9
Sc10g0006870 Simmondsia chinensis HOM05D004580 ORTHO05D005917 2.2e-155 552.7 406 66.7
FAN05G1019 Fragaria x ananassa HOM05D004580 ORTHO05D005917 2.8e-155 552.4 343 75.8
ECA236G1081 Erigeron canadensis HOM05D004580 ORTHO05D005917 1.8e-154 549.7 377 69.5
DCAR_002598 Daucus carota HOM05D004580 ORTHO05D005917 2.4e-154 549.3 376 69.9
Potri.002G099000 Populus trichocarpa HOM05D004580 ORTHO05D005917 2.4e-154 549.3 390 69.7
vmacro15988 Vaccinium macrocarpon HOM05D004580 ORTHO05D005917 5.3e-154 548.1 362 70.2
Nn5g30292 Nelumbo nucifera HOM05D004580 ORTHO05D005917 9.1e-154 547.4 339 75.2
PSO541G6503 Papaver somniferum HOM05D004580 ORTHO05D005917 2.0e-153 546.2 372 70.2
MSTRG.13678 Avicennia marina HOM05D004580 ORTHO05D005917 1.0e-152 543.9 391 66.5
TAR381G0740 Trochodendron aralioides HOM05D004580 ORTHO05D005917 1.0e-152 543.9 377 71.4
Hund08631 Selenicereus undatus HOM05D004580 ORTHO05D005917 1.3e-152 543.5 407 64.6
MBI05_g34722_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 2.9e-152 542.3 389 66.3
Nitab4.5_0000069g0120 Nicotiana tabacum HOM05D004580 ORTHO05D005917 8.5e-152 540.8 386 65.5
MELO3C003564.2 Cucumis melo HOM05D004580 ORTHO05D005917 4.2e-151 538.5 354 71.8
Nitab4.5_0013217g0010 Nicotiana tabacum HOM05D004580 ORTHO05D005917 5.5e-151 538.1 386 65.3
Glyma.11G184601 Glycine max HOM05D004580 ORTHO05D005917 9.4e-151 537.3 339 74.0
Medtr4g053370 Medicago truncatula HOM05D004580 ORTHO05D005917 1.2e-150 537.0 341 74.8
MSTRG.2066 Avicennia marina HOM05D004580 ORTHO05D005917 2.1e-150 536.2 392 65.6
PGSC0003DMG402016396 Solanum tuberosum HOM05D004580 ORTHO05D005917 2.1e-150 536.2 390 66.2
ClCG11G014220 Citrullus lanatus HOM05D004580 ORTHO05D005917 2.7e-150 535.8 354 71.8
Oeu036766.1 Olea europaea HOM05D004580 ORTHO05D005917 2.7e-150 535.8 389 66.3
Sabra02G0077800 Salix brachista HOM05D004580 ORTHO05D005917 2.7e-150 535.8 392 68.9
CsaV3_3G047600 Cucumis sativus L. HOM05D004580 ORTHO05D005917 1.0e-149 533.9 355 71.0
Rhsim09G0069400 Rhododendron simsii HOM05D004580 ORTHO05D005917 8.8e-149 530.8 395 65.6
ATR0706G027 Amborella trichopoda HOM05D004580 ORTHO05D005917 2.0e-148 529.6 333 73.0
PSO781G0322 Papaver somniferum HOM05D004580 ORTHO05D005917 2.0e-148 529.6 359 68.8
Sed0008659 Sechium edule HOM05D004580 ORTHO05D005917 5.7e-148 528.1 320 75.3
Solyc01g008280.4 Solanum lycopersicum HOM05D004580 ORTHO05D005917 2.8e-147 525.8 385 65.2
Sopen01g003800 Solanum pennellii HOM05D004580 ORTHO05D005917 4.8e-147 525.0 385 65.5
CDE05G3003 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 8.3e-147 524.2 368 67.9
Ah.01g012710 Amaranthus hybridus HOM05D004580 ORTHO05D005917 1.1e-146 523.9 395 64.3
CSS0036827 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 2.4e-146 522.7 391 66.2
GSVIVG01009068001 Vitis vinifera HOM05D004580 ORTHO05D005917 5.4e-146 521.5 342 72.5
CSS0039091 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.2e-145 520.4 387 66.1
Ca_19393_v3 Cicer arietinum L. HOM05D004580 ORTHO05D005917 1.7e-144 516.5 372 67.7
HPP92_004278 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.3e-144 516.2 388 66.5
Lj3g0026440 Lotus japonicus HOM05D004580 ORTHO05D005917 3.8e-144 515.4 344 69.8
Lalb_Chr03g0028011 Lupinus albus HOM05D004580 ORTHO05D005917 8.6e-144 514.2 365 68.5
Migut.E00684 Erythranthe guttata HOM05D004580 ORTHO05D005917 1.9e-143 513.1 392 62.5
Nn1g05417 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.9e-143 513.1 325 74.2
PSO541G6453 Papaver somniferum HOM05D004580 ORTHO05D005917 1.9e-143 513.1 360 66.9
Psat7g188520 Pisum sativum HOM05D004580 ORTHO05D005917 8.0e-142 507.7 383 65.5
SGA_v2.0_scaffold358G49840 Striga asiatica HOM05D004580 ORTHO05D005917 1.0e-141 507.3 366 65.6
CSS0011251 Camellia sinensis var. sinensis HOM05D004580 ORTHO05D005917 1.4e-141 506.9 309 74.8
Lj3P847T35 Lonicera japonica HOM05D004580 ORTHO05D005917 1.4e-141 506.9 306 75.5
AUR62017729 Chenopodium quinoa HOM05D004580 ORTHO05D005917 3.0e-141 505.8 371 65.0
SEGI_24357 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 9.8e-140 500.7 380 63.7
EL10Ac9g22979 Beta vulgaris HOM05D004580 ORTHO05D005917 3.7e-139 498.8 344 68.3
FvH4_5g29380 Fragaria vesca HOM05D004580 ORTHO05D005917 3.8e-136 488.8 335 70.4
Os06g0219800 Oryza sativa ssp. japonica HOM05D004580 ORTHO05D005917 6.8e-133 478.0 367 62.9
MBI02_g02175_MAGBIO Magnolia biondii HOM05D004580 ORTHO05D005917 5.8e-132 474.9 347 66.3
Zm00001eb372770 Zea mays HOM05D004580 ORTHO05D005917 1.3e-131 473.8 369 63.4
Peaxi162Scf00021g02317 Petunia axillaris HOM05D004580 ORTHO05D005917 4.1e-130 468.8 361 62.3
SHI33348 Sapria himalayana HOM05D004580 ORTHO05D005917 7.3e-127 458.0 372 60.5
AagrBONN_evm.TU.Sc2ySwM_117.2526 Anthoceros agrestis HOM05D004580 ORTHO05D005917 8.0e-126 454.5 389 57.8
Gorai.009G235200 Gossypium raimondii HOM05D004580 ORTHO05D005917 1.4e-125 453.8 321 66.4
HPP92_016361 Vanilla planifolia HOM05D004580 ORTHO05D005917 2.6e-124 449.5 368 61.7
Mapoly0004s0171 Marchantia polymorpha HOM05D004580 ORTHO05D005917 1.3e-123 447.2 383 58.0
Pp3c1_41950 Physcomitrium patens HOM05D004580 ORTHO05D005917 1.7e-120 436.8 336 60.1
FAN18G2046 Fragaria x ananassa HOM05D004580 ORTHO05D005917 8.6e-120 434.5 282 72.7
Pp3c2_670 Physcomitrium patens HOM05D004580 ORTHO05D005917 4.3e-119 432.2 347 59.4
Gohir.D05G227500 Gossypium hirsutum HOM05D004580 ORTHO05D005917 8.1e-118 427.9 231 83.5
Gohir.A05G224950 Gossypium hirsutum HOM05D004580 ORTHO05D005917 2.1e-113 413.3 304 66.1
SMO329G0013 Selaginella moellendorffii HOM05D004580 ORTHO05D005917 2.1e-113 413.3 327 59.0
CBR_g45439 Chara braunii HOM05D004580 ORTHO05D005917 3.0e-112 409.5 391 55.0
Lalb_Chr19g0136591 Lupinus albus HOM05D004580 ORTHO05D005917 4.0e-109 399.1 380 54.7
TPR.G17228 Trifolium pratense HOM05D004580 ORTHO05D005917 1.3e-107 394.0 315 61.3
Glyma.12G087751 Glycine max HOM05D004580 ORTHO05D005917 2.0e-100 370.2 206 83.0
FAN02G1810 Fragaria x ananassa HOM05D004580 ORTHO05D005917 7.6e-100 368.2 198 85.9
BraA09t38542Z Brassica rapa HOM05D004580 ORTHO05D005917 7.3e-95 351.7 219 78.1
unitig_8.g3592 Utricularia gibba HOM05D004580 ORTHO05D005917 2.1e-94 350.1 201 78.6
A09p29790 Brassica napus HOM05D004580 ORTHO05D005917 3.4e-92 342.8 177 90.4
SEGI_19435 Sequoiadendron giganteum HOM05D004580 ORTHO05D005917 4.9e-91 339.0 271 60.5
Aqoxy6G00748 Aquilegia oxysepala HOM05D004580 ORTHO05D005917 7.9e-89 331.6 234 69.7
CAN.G282.45 Capsicum annuum HOM05D004580 ORTHO05D005917 8.4e-83 311.6 231 64.1
Cre13.g580650 Chlamydomonas reinhardtii HOM05D004580 ORTHO05D005917 1.3e-80 304.3 400 40.2
FAN24G1342 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.3e-72 277.7 229 60.7
CDE05G0498 Ceratophyllum demersum HOM05D004580 ORTHO05D005917 3.3e-71 273.1 230 58.7
MCO01G633 Micromonas commoda HOM05D004580 ORTHO05D005917 3.7e-70 269.6 304 44.4
PRCOL_00005481 Prasinoderma coloniale HOM05D004580 ORTHO05D005917 1.4e-69 267.7 345 40.6
FvH4_2g11953 Fragaria vesca HOM05D004580 ORTHO05D000007 1.1e-66 258.1 221 58.4
Cfa021829 Carpinus fangiana HOM05D004580 ORTHO05D011646 2.8e-62 243.4 382 37.4
Oeu013193.1 Olea europaea HOM05D004580 ORTHO05D005917 5.5e-58 229.2 197 56.9
Cfa001645 Carpinus fangiana HOM05D004580 ORTHO05D020348 6.3e-54 215.7 349 35.8
GSVIVG01009057001 Vitis vinifera HOM05D004580 ORTHO05D005917 2.0e-47 194.1 125 76.0
FAN24G1075 Fragaria x ananassa HOM05D004580 ORTHO05D005917 1.9e-34 151.0 148 55.4
Cfa014845 Carpinus fangiana HOM05D000016 ORTHO05D000725 2.3e-32 144.1 142 53.5
Nn5g29558 Nelumbo nucifera HOM05D004580 ORTHO05D005917 2.2e-30 137.5 116 61.2
Nn3g16512 Nelumbo nucifera HOM05D004580 ORTHO05D005917 1.8e-24 117.9 65 81.5
FvH4_4g06652 Fragaria vesca HOM05D004580 ORTHO05D000031 2.4e-21 107.5 57 82.5
BraA09t38543Z Brassica rapa HOM05D004580 ORTHO05D107497 7.3e-10 69.3 142 38.0
Nitab4.5_0006124g0020 Nicotiana tabacum HOM05D000011 ORTHO05D036898 3.7e-06 57.0 43 65.1


User provided reference genes

Program Settings