Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 1.5e-155 553.1 340 100.0
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 1.4e-150 536.6 340 98.2
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 1.0e-145 520.4 371 89.5
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 5.2e-145 518.1 343 95.0
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 2.0e-141 506.1 374 82.1
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 6.1e-138 494.6 340 85.6
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.9e-123 446.4 330 80.9
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 3.9e-116 422.2 331 74.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 4.0e-113 412.1 339 77.6
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.0e-113 412.1 340 78.8
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 1.1e-107 394.0 343 75.5
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 4.3e-107 392.1 340 69.7
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 2.2e-95 353.2 302 67.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 2.4e-94 349.7 333 64.6
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 2.9e-87 326.2 327 62.4
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 2.5e-86 323.2 349 59.9
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 3.2e-86 322.8 333 62.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.5e-80 303.9 301 64.1
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.3e-74 282.0 305 66.2
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.9e-73 278.5 302 66.2
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 5.9e-72 275.4 304 61.5
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.9e-70 270.4 304 54.9
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 3.6e-69 266.2 303 60.7
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 4.8e-66 255.8 330 48.8
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 1.4e-65 254.2 333 52.9
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 2.4e-65 253.4 293 51.5
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.3e-65 252.3 330 51.8
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.5e-64 250.8 331 46.5
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.0e-64 250.4 328 47.6
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 4.5e-64 249.2 285 55.8
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 5.9e-64 248.8 288 55.6
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 5.9e-64 248.8 330 51.8
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 1.0e-63 248.1 332 47.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.7e-63 247.3 330 51.8
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 2.9e-63 246.5 288 56.6
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 2.9e-63 246.5 333 52.6
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 8.5e-63 245.0 326 47.2
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 4.2e-62 242.7 292 55.5
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 7.2e-62 241.9 333 52.3
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 9.4e-62 241.5 330 49.1
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-61 241.1 332 52.1
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 1.0e-60 238.0 339 49.9
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.8e-60 237.3 324 45.4
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.3e-60 236.9 332 50.3
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 2.3e-60 236.9 334 43.7
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.8e-60 235.0 331 51.1
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 1.1e-59 234.6 323 44.6
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.5e-59 234.2 323 44.6
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 2.6e-59 233.4 329 45.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 2.6e-59 233.4 334 50.6
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 4.4e-59 232.6 332 53.3
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 5.7e-59 232.3 333 44.1
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.7e-58 230.7 329 47.7
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.8e-58 229.2 337 49.3
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 6.3e-58 228.8 329 47.7
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 6.3e-58 228.8 336 53.3
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 1.1e-57 228.0 333 48.3
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.1e-57 226.5 332 44.0
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 4.1e-57 226.1 334 47.0
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.3e-57 225.7 333 48.6
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 7.0e-57 225.3 335 43.3
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-56 224.6 336 44.0
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 1.5e-56 224.2 321 41.7
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.5e-56 223.0 335 48.4
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.0e-55 221.5 331 42.6
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.7e-55 220.7 329 45.0
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.9e-55 219.9 334 44.6
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 3.8e-55 219.5 331 52.9
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 3.8e-55 219.5 335 46.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 6.5e-55 218.8 332 42.8
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 8.5e-55 218.4 335 43.0
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 1.1e-54 218.0 326 51.8
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.9e-54 217.2 318 46.9
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.9e-54 217.2 331 47.1
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 4.2e-54 216.1 384 39.6
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 4.2e-54 216.1 331 41.1
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.2e-54 215.3 332 46.1
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.7e-53 213.4 328 42.7
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.7e-53 213.4 335 42.7
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 8.0e-53 211.8 318 42.5
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 1.4e-52 211.1 331 40.8
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.8e-52 210.7 335 46.9
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.3e-52 210.3 328 41.8
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 4.0e-52 209.5 330 42.1
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 6.7e-52 208.8 330 42.1
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 2.0e-51 207.2 334 49.1
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 3.3e-51 206.5 334 47.3
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 7.5e-51 205.3 333 39.6
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.2e-50 203.8 330 46.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 2.2e-50 203.8 330 46.1
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.4e-49 200.3 322 46.0
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.6e-48 196.8 339 41.9
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 3.5e-48 196.4 328 48.8
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 5.9e-48 195.7 330 39.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.9e-48 195.7 285 48.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 7.7e-48 195.3 326 44.8
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.0e-47 194.9 333 46.5
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.3e-47 194.5 292 47.3
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 2.2e-47 193.7 333 40.8
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 2.2e-47 193.7 333 42.6
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 3.8e-47 193.0 334 46.4
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 1.9e-46 190.7 332 38.0
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 2.5e-46 190.3 340 47.4
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 2.7e-45 186.8 300 41.3
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 3.6e-45 186.4 334 46.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 3.6e-45 186.4 330 44.5
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.7e-45 186.0 332 46.7
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.7e-45 186.0 389 35.0
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 6.1e-45 185.7 391 39.6
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 8.0e-45 185.3 264 43.2
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.8e-44 184.1 401 34.7
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 3.0e-44 183.3 333 46.8
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.0e-44 183.3 389 37.5
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 5.2e-44 182.6 369 35.5
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 1.2e-43 181.4 227 55.5
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 1.2e-43 181.4 227 55.5
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 1.5e-43 181.0 334 37.4
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 3.7e-42 176.4 321 39.3
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 1.4e-41 174.5 232 53.0
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.4e-41 174.5 329 37.4
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 9.1e-41 171.8 338 41.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.6e-40 171.0 327 42.5
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 6.5e-39 165.6 330 37.9
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 5.5e-38 162.5 271 41.3
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 2.1e-37 160.6 346 37.9
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 2.7e-37 160.2 212 52.4
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 1.4e-36 157.9 293 37.5
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.5e-35 154.5 265 43.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.7e-34 151.0 403 37.0
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.7e-34 151.0 276 38.4
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 3.7e-34 149.8 312 36.9
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 1.4e-33 147.9 275 39.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 1.2e-29 134.8 288 33.0
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.7e-29 132.9 264 47.0
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 5.2e-28 129.4 122 54.9
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 1.2e-27 128.3 196 41.8
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 2.0e-27 127.5 314 31.5
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 1.7e-26 124.4 266 35.7
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 3.7e-26 123.2 263 46.0
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 1.4e-25 121.3 208 36.1
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 1.2e-24 118.2 123 52.8
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.0e-23 115.2 229 39.3
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 8.6e-23 112.1 175 40.6
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-21 108.2 124 51.6
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.2e-21 108.2 124 51.6
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 1.6e-21 107.8 126 50.8
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.8e-21 107.1 124 46.0
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.8e-20 104.4 110 50.9
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 4.0e-20 103.2 307 32.9
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.2e-20 102.8 175 38.3
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 5.8e-19 99.4 249 35.3
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 1.3e-18 98.2 123 47.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.2e-18 97.4 366 26.5
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-17 94.7 125 44.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.4e-17 92.8 369 30.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 3.9e-15 86.7 325 26.8
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 6.6e-15 85.9 187 35.3
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 8.6e-15 85.5 112 43.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 8.6e-15 85.5 112 43.8
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.2e-13 81.6 180 34.4
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 8.1e-13 79.0 134 40.3
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.1e-12 78.6 84 51.2
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.4e-12 78.2 134 41.8
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 3.4e-11 73.6 106 45.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 2.2e-10 70.9 225 31.1
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-09 67.4 60 55.0
BcaB02g06539 Brassica carinata HOM05D003707 ORTHO05D004309 3.2e-09 67.0 74 59.5
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 6.0e-08 62.8 189 28.6
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 7.8e-08 62.4 156 34.0
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.6e-07 59.3 118 34.7
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 8.6e-07 58.9 342 24.6
BraA09t41558Z Brassica rapa HOM05D065654 ORTHO05D032288 1.5e-06 58.2 234 29.1
A09p61960 Brassica napus HOM05D065654 ORTHO05D032288 2.5e-06 57.4 253 28.9


User provided reference genes

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