Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04676 Brassica carinata HOM05D013989 ORTHO05D004630 5.6e-77 290.8 141 100.0
BcaC04g22438 Brassica carinata HOM05D013989 ORTHO05D004630 7.1e-72 273.9 141 95.0
BcaC04g22439 Brassica carinata HOM05D013989 ORTHO05D004630 7.1e-72 273.9 141 95.0
BcaC04g21462 Brassica carinata HOM05D013989 ORTHO05D004630 8.6e-70 266.9 141 94.3
BcaC01g00609 Brassica carinata HOM05D013989 ORTHO05D004630 1.1e-69 266.5 141 92.9
BcaC04g20585 Brassica carinata HOM05D013989 ORTHO05D091667 1.5e-69 266.2 141 93.6
BcaC05g27683 Brassica carinata HOM05D013989 ORTHO05D004630 1.7e-62 242.7 141 87.9
BcaC04g20466 Brassica carinata HOM05D013989 ORTHO05D094706 2.3e-62 242.3 141 87.9
BcaC02g07949 Brassica carinata HOM05D013989 ORTHO05D004630 2.4e-51 205.7 141 73.8
BcaC08g46297 Brassica carinata HOM05D013989 ORTHO05D094633 2.2e-41 172.6 141 69.5
BcaC08g46298 Brassica carinata HOM05D013989 ORTHO05D091802 1.1e-40 170.2 141 69.5
AT5G50330 Arabidopsis thaliana HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
BcaB08g35409 Brassica carinata HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
BcaC04g20804 Brassica carinata HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
A10p08400 Brassica napus HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
C09p38980 Brassica napus HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
BolC9t56778H Brassica oleracea HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
BraSC37t46165Z Brassica rapa HOM05D000290 ORTHO05D004630 6.7e-14 81.3 39 92.3
AL664U10010 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 8.8e-14 80.9 39 92.3
Carub.0008s1037 Capsella rubella HOM05D000290 ORTHO05D004630 8.8e-14 80.9 39 92.3
AL8G24390 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 3.3e-13 79.0 39 89.7
CARHR258180 Cardamine hirsuta HOM05D000290 ORTHO05D004630 1.7e-12 76.6 39 84.6
Thhalv10013416m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 3.7e-12 75.5 39 84.6
Aa31LG3G5900 Aethionema arabicum HOM05D000290 ORTHO05D004630 1.4e-11 73.6 39 79.5
CARHR232200 Cardamine hirsuta HOM05D000290 ORTHO05D004630 3.1e-11 72.4 39 79.5
AL7G28370 Arabidopsis lyrata HOM05D000290 ORTHO05D004630 9.1e-11 70.9 39 76.9
BcaB03g12448 Brassica carinata HOM05D000290 ORTHO05D004630 9.1e-11 70.9 39 76.9
BcaC07g38154 Brassica carinata HOM05D000290 ORTHO05D004630 2.6e-10 69.3 39 74.4
BraA08t34086Z Brassica rapa HOM05D000290 ORTHO05D004630 2.6e-10 69.3 39 74.4
Thhalv10027088m.g Eutrema salsugineum HOM05D000290 ORTHO05D004630 2.6e-10 69.3 39 74.4
Sp7g22800 Schrenkiella parvula HOM05D000290 ORTHO05D004630 2.6e-10 69.3 39 74.4
Gohir.D07G057700 Gossypium hirsutum HOM05D000290 ORTHO05D004630 7.7e-10 67.8 37 78.4
Gorai.001G061200 Gossypium raimondii HOM05D000290 ORTHO05D004630 7.7e-10 67.8 37 78.4
Potri.012G093600 Populus trichocarpa HOM05D000290 ORTHO05D004630 1.3e-09 67.0 35 80.0
Sabra15G0113100 Salix brachista HOM05D000290 ORTHO05D004630 1.3e-09 67.0 35 80.0
Solyc03g110940.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 1.3e-09 67.0 36 77.8
THA.LOC104825002 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 1.3e-09 67.0 39 74.4
Duzib084G0271 Durio zibethinus HOM05D000290 ORTHO05D004630 1.7e-09 66.6 36 80.6
Gohir.A07G053300 Gossypium hirsutum HOM05D000290 ORTHO05D004630 1.7e-09 66.6 37 75.7
Gohir.D09G246000 Gossypium hirsutum HOM05D000290 ORTHO05D004630 1.7e-09 66.6 36 80.6
Gorai.006G270500 Gossypium raimondii HOM05D000290 ORTHO05D004630 1.7e-09 66.6 36 80.6
QL10p005012 Quercus lobata HOM05D000290 ORTHO05D004630 2.2e-09 66.2 35 80.0
Peaxi162Scf00324g00333 Petunia axillaris HOM05D000290 ORTHO05D004630 2.9e-09 65.9 36 75.0
Potri.015G091000 Populus trichocarpa HOM05D000290 ORTHO05D004630 2.9e-09 65.9 35 77.1
THA.LOC104811604 Tarenaya hassleriana HOM05D000290 ORTHO05D004630 2.9e-09 65.9 39 71.8
MELO3C002336.2 Cucumis melo HOM05D000290 ORTHO05D004630 3.8e-09 65.5 36 72.2
CsaV3_1G009330 Cucumis sativus L. HOM05D000290 ORTHO05D004630 3.8e-09 65.5 36 72.2
Gohir.A09G245100 Gossypium hirsutum HOM05D000290 ORTHO05D004630 3.8e-09 65.5 36 77.8
CAN.G352.56 Capsicum annuum HOM05D000290 ORTHO05D004630 6.5e-09 64.7 36 75.0
Sopen03g030130 Solanum pennellii HOM05D000290 ORTHO05D004630 6.5e-09 64.7 36 75.0
COL.COLO4_03516 Corchorus olitorius HOM05D000290 ORTHO05D004630 8.5e-09 64.3 36 75.0
Thecc.03G123200 Theobroma cacao HOM05D000290 ORTHO05D004630 8.5e-09 64.3 36 77.8
Migut.I00478 Erythranthe guttata HOM05D000290 ORTHO05D004630 1.1e-08 63.9 42 66.7
Hma1.2p1_0046F.1_g027510 Hydrangea macrophylla HOM05D000290 ORTHO05D004630 1.1e-08 63.9 38 71.1
Nitab4.5_0000366g0080 Nicotiana tabacum HOM05D000290 ORTHO05D004630 1.1e-08 63.9 36 69.4
Lj9C475G6 Lonicera japonica HOM05D000290 ORTHO05D004630 1.5e-08 63.5 39 69.2
CiPaw.11G011800 Carya illinoinensis HOM05D000290 ORTHO05D004630 2.5e-08 62.8 34 76.5
Ciclev10020267m.g Citrus clementina HOM05D000290 ORTHO05D004630 2.5e-08 62.8 38 68.4
Glyma.17G127200 Glycine max HOM05D000290 ORTHO05D004630 2.5e-08 62.8 36 72.2
Lsat_1_v5_gn_4_78801 Lactuca sativa HOM05D000290 ORTHO05D004630 2.5e-08 62.8 35 71.4
SGA_v2.0_scaffold161G37824 Striga asiatica HOM05D000290 ORTHO05D004630 3.2e-08 62.4 35 74.3
CSS0024917 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 4.2e-08 62.0 56 55.4
Cpa.g.sc4.75 Carica papaya HOM05D000290 ORTHO05D004630 4.2e-08 62.0 39 66.7
HanXRQChr02g0035151 Helianthus annuus HOM05D000290 ORTHO05D004630 4.2e-08 62.0 35 71.4
Lsat_1_v5_gn_1_29520 Lactuca sativa HOM05D000290 ORTHO05D004630 4.2e-08 62.0 35 74.3
Nitab4.5_0006219g0020 Nicotiana tabacum HOM05D000290 ORTHO05D004630 4.2e-08 62.0 36 69.4
SalBow5G1105 Salvia bowleyana HOM05D000290 ORTHO05D004630 4.2e-08 62.0 39 66.7
Eucgr.K02755 Eucalyptus grandis HOM05D000290 ORTHO05D004630 5.5e-08 61.6 39 64.1
GSVIVG01007537001 Vitis vinifera HOM05D000290 ORTHO05D004630 5.5e-08 61.6 39 69.2
Manes.14G055200 Manihot esculenta HOM05D000290 ORTHO05D004630 9.4e-08 60.8 39 69.2
Oeu011574.1 Olea europaea HOM05D000290 ORTHO05D004630 9.4e-08 60.8 39 66.7
Nitab4.5_0010637g0030 Nicotiana tabacum HOM05D000290 ORTHO05D004630 1.6e-07 60.1 39 66.7
unitig_0.g2230 Utricularia gibba HOM05D000290 ORTHO05D004630 1.6e-07 60.1 39 64.1
CSS0022906 Camellia sinensis var. sinensis HOM05D000290 ORTHO05D004630 2.1e-07 59.7 39 64.1
MD17G1259300 Malus domestica HOM05D000290 ORTHO05D004630 2.1e-07 59.7 35 65.7
Nitab4.5_0005418g0070 Nicotiana tabacum HOM05D000290 ORTHO05D004630 2.1e-07 59.7 36 72.2
CANSAT80G1334 Cannabis sativa HOM05D000290 ORTHO05D004630 2.7e-07 59.3 35 65.7
Actinidia25610 Actinidia chinensis HOM05D000290 ORTHO05D004630 3.6e-07 58.9 46 63.0
PSO017G4570 Papaver somniferum HOM05D000290 ORTHO05D004630 3.6e-07 58.9 34 67.6
PSO478G4646 Papaver somniferum HOM05D000290 ORTHO05D004630 3.6e-07 58.9 34 67.6
RcHm_v2.0_Chr7g0190911 Rosa chinensis HOM05D000290 ORTHO05D004630 3.6e-07 58.9 35 62.9
Aa31LG7G11030 Aethionema arabicum HOM05D000290 ORTHO05D004630 4.7e-07 58.5 38 65.8
ECA247G0104 Erigeron canadensis HOM05D000290 ORTHO05D004630 4.7e-07 58.5 35 68.6
CDE02G0588 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 6.1e-07 58.2 33 66.7
Solyc07g009150.3 Solanum lycopersicum HOM05D000290 ORTHO05D004630 6.1e-07 58.2 32 75.0
Sopen07g017140 Solanum pennellii HOM05D000290 ORTHO05D004630 6.1e-07 58.2 32 75.0
PGSC0003DMG400024209 Solanum tuberosum HOM05D000290 ORTHO05D004630 6.1e-07 58.2 32 75.0
CDE09G0950 Ceratophyllum demersum HOM05D000290 ORTHO05D004630 8.0e-07 57.8 33 66.7
FvH4_5g07580 Fragaria vesca HOM05D000290 ORTHO05D004630 8.0e-07 57.8 35 62.9
FAN18G2983 Fragaria x ananassa HOM05D000290 ORTHO05D004630 8.0e-07 57.8 35 62.9
Lj2C144T5 Lonicera japonica HOM05D000290 ORTHO05D004630 8.0e-07 57.8 39 64.1
Lj5C100G2 Lonicera japonica HOM05D000290 ORTHO05D004630 8.0e-07 57.8 39 64.1
Prupe.5G156400 Prunus persica HOM05D000290 ORTHO05D004630 8.0e-07 57.8 35 62.9
TAR446G0003 Trochodendron aralioides HOM05D000290 ORTHO05D004630 8.0e-07 57.8 39 59.0
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 1.0e-06 57.4 39 61.5
FAN04G1418 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.0e-06 57.4 35 62.9
FAN08G2628 Fragaria x ananassa HOM05D000290 ORTHO05D004630 1.0e-06 57.4 35 62.9
Nn4g22452 Nelumbo nucifera HOM05D000290 ORTHO05D004630 1.0e-06 57.4 39 56.4
MSTRG.4588 Avicennia marina HOM05D000290 ORTHO05D004630 1.4e-06 57.0 33 69.7
Glyma.05G045000 Glycine max HOM05D000290 ORTHO05D004630 2.3e-06 56.2 35 65.7
MD06G1149200 Malus domestica HOM05D000290 ORTHO05D004630 2.3e-06 56.2 34 61.8
Sc04g0000940 Simmondsia chinensis HOM05D000290 ORTHO05D004630 2.3e-06 56.2 35 62.9
arahy.Tifrunner.gnm1.ann1.JHQ7C4 Arachis hypogaea HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 68.6
arahy.Tifrunner.gnm1.ann1.RWP7TH Arachis hypogaea HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 68.6
Cc04_g10280 Coffea canephora HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 62.9
Phvul.003G208300 Phaseolus vulgaris HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 65.7
VMungo1215G2720 Vigna mungo HOM05D000290 ORTHO05D004630 5.2e-06 55.1 35 65.7
FAN13G0034 Fragaria x ananassa HOM05D000290 ORTHO05D004630 6.7e-06 54.7 35 60.0
Rhsim08G0185200 Rhododendron simsii HOM05D000290 ORTHO05D004630 6.7e-06 54.7 34 64.7
HanXRQChr09g0272881 Helianthus annuus HOM05D000290 ORTHO05D004630 8.8e-06 54.3 39 64.1
Lj4g0027510 Lotus japonicus HOM05D000290 ORTHO05D004630 8.8e-06 54.3 35 62.9
TPR.G37534 Trifolium pratense HOM05D000290 ORTHO05D004630 8.8e-06 54.3 35 65.7


User provided reference genes

Program Settings