Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 2.8e-31 138.3 85 100.0
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 2.8e-31 138.3 85 100.0
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 2.8e-31 138.3 85 100.0
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 2.8e-31 138.3 85 100.0
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 6.9e-30 133.7 86 98.8
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 6.9e-30 133.7 86 98.8
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 5.1e-25 117.5 85 80.0
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.5e-24 115.9 85 78.8
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.9e-24 115.5 85 88.2
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 1.9e-24 115.5 85 85.9
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 4.3e-24 114.4 85 78.8
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 7.4e-24 113.6 85 83.5
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.8e-23 110.9 85 75.3
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 5.8e-21 104.0 85 82.4
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 5.8e-21 104.0 85 82.4
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.0e-20 103.2 85 77.6
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 4.9e-20 100.9 85 81.2
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 4.9e-20 100.9 85 81.2
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 4.9e-20 100.9 85 81.2
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 2.1e-18 95.5 84 78.6
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 2.7e-18 95.1 86 69.8
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 7.9e-18 93.6 85 78.8
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 7.9e-18 93.6 85 78.8
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 7.4e-16 87.0 85 70.6
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 9.7e-16 86.7 85 75.3
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.2e-15 85.5 88 69.3
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.8e-15 84.3 85 60.0
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 6.3e-15 84.0 85 69.4
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.4e-14 82.8 85 69.4
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 1.8e-14 82.4 85 58.8
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 3.1e-14 81.6 85 58.8
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 3.1e-14 81.6 85 58.8
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 3.1e-14 81.6 85 58.8
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 3.1e-14 81.6 85 58.8
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 3.1e-14 81.6 85 58.8
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 1.5e-13 79.3 74 60.8
A03p54930 Brassica napus HOM05D003086 ORTHO05D003347 1.0e-12 76.6 86 65.1
BraA03t14558Z Brassica rapa HOM05D003086 ORTHO05D003347 1.0e-12 76.6 86 65.1
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 5.0e-12 74.3 86 57.0
BcaNung06471 Brassica carinata HOM05D003086 ORTHO05D003347 8.5e-12 73.6 86 57.0
C07p53320 Brassica napus HOM05D003086 ORTHO05D003347 8.5e-12 73.6 86 57.0
BolC7t45826H Brassica oleracea HOM05D003086 ORTHO05D003347 8.5e-12 73.6 86 57.0
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.2e-11 71.2 63 61.9
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 5.1e-09 64.3 78 57.7
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 8.8e-09 63.5 61 54.1
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.1e-08 63.2 75 44.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.5e-08 62.8 60 56.7
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.5e-08 62.0 55 56.4
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 3.3e-08 61.6 73 53.4
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 3.3e-08 61.6 72 44.4
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 3.3e-08 61.6 62 54.8
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 9.7e-08 60.1 63 55.6
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 9.7e-08 60.1 58 67.2
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 9.7e-08 60.1 58 67.2
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 1.3e-07 59.7 68 48.5
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.3e-07 59.7 69 63.8
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.3e-07 59.7 69 63.8
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.3e-07 59.7 63 54.0
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.3e-07 59.7 56 53.6
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 1.3e-07 59.7 84 45.2
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 1.7e-07 59.3 58 63.8
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 1.7e-07 59.3 63 50.8
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.8e-07 58.5 63 54.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 2.8e-07 58.5 63 50.8
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.8e-07 58.5 41 68.3
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 3.7e-07 58.2 65 49.2
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 3.7e-07 58.2 74 45.9
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.8e-07 57.8 69 44.9
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 4.8e-07 57.8 63 52.4
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 6.3e-07 57.4 64 50.0
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 6.3e-07 57.4 42 71.4
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.3e-07 57.4 58 69.0
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.3e-07 57.4 58 69.0
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 8.2e-07 57.0 41 65.9
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.1e-06 56.6 41 68.3
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 1.1e-06 56.6 57 66.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.4e-06 56.2 36 72.2
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.4e-06 56.2 36 72.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.4e-06 56.2 36 72.2
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 1.4e-06 56.2 61 50.8
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.4e-06 56.2 66 45.5
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.4e-06 56.2 41 63.4
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.8e-06 55.8 42 61.9
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.8e-06 55.8 64 53.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.8e-06 55.8 39 69.2
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.8e-06 55.8 44 63.6
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-06 55.5 69 44.9
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.4e-06 55.5 53 54.7
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 45 62.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 45 62.2
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.4e-06 55.5 41 63.4
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.4e-06 55.5 56 50.0
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 66 48.5
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 2.4e-06 55.5 61 55.7
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.4e-06 55.5 60 50.0
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 2.4e-06 55.5 42 66.7
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 64 48.4
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 2.4e-06 55.5 64 48.4
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.4e-06 55.5 64 48.4
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.4e-06 55.5 65 47.7
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 3.1e-06 55.1 43 67.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 3.1e-06 55.1 43 67.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 3.1e-06 55.1 43 67.4
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 3.1e-06 55.1 69 50.7
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 3.1e-06 55.1 45 62.2
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 3.1e-06 55.1 61 45.9
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.1e-06 54.7 42 64.3
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 4.1e-06 54.7 69 43.5
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 4.1e-06 54.7 66 57.6
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 4.1e-06 54.7 67 47.8
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 4.1e-06 54.7 34 76.5
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 4.1e-06 54.7 56 50.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 4.1e-06 54.7 58 55.2
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 5.3e-06 54.3 66 45.5
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.3e-06 54.3 67 46.3
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 5.3e-06 54.3 67 46.3
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 5.3e-06 54.3 55 47.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.3e-06 54.3 64 46.9
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 5.3e-06 54.3 55 49.1
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 5.3e-06 54.3 51 56.9
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 5.3e-06 54.3 39 64.1
RcHm_v2.0_Chr1g0381731 Rosa chinensis HOM05D003086 ORTHO05D003347 5.3e-06 54.3 45 57.8
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 6.9e-06 53.9 66 47.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 6.9e-06 53.9 42 64.3
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 6.9e-06 53.9 39 71.8
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 6.9e-06 53.9 36 66.7
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 6.9e-06 53.9 64 46.9
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.1e-06 53.5 42 59.5
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 9.1e-06 53.5 85 42.4
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.1e-06 53.5 75 48.0
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 9.1e-06 53.5 44 68.2
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 9.1e-06 53.5 61 55.7


User provided reference genes

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