Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 8.6e-157 557.0 289 100.0
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 4.2e-71 272.3 458 44.8
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.6e-70 270.4 465 44.1
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 1.5e-68 263.8 462 44.6
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 8.5e-64 248.1 455 44.0
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 1.6e-62 243.8 444 44.6
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 2.7e-62 243.0 432 42.4
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 8.0e-62 241.5 445 44.3
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 1.0e-61 241.1 451 43.9
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 1.0e-61 241.1 451 43.9
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 1.0e-61 241.1 451 43.9
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 1.2e-60 237.7 213 67.1
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 3.7e-59 232.6 213 66.7
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 2.5e-55 219.9 405 44.0
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 6.1e-54 215.3 454 41.0
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 2.0e-49 200.3 424 38.4
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 6.6e-32 142.1 441 31.7
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 6.6e-24 115.5 309 34.0
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 3.4e-20 103.2 137 48.2
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 4.4e-20 102.8 287 33.1
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 4.4e-20 102.8 285 35.1
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 5.8e-20 102.4 274 33.9
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 7.6e-20 102.1 233 36.5
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 2.2e-19 100.5 456 26.8
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 2.9e-19 100.1 238 34.5
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.9e-19 100.1 306 31.0
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 4.9e-19 99.4 134 47.8
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 4.9e-19 99.4 277 32.5
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 1.1e-18 98.2 136 44.1
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 1.1e-18 98.2 276 33.3
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 1.1e-18 98.2 201 35.3
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 1.4e-18 97.8 171 38.0
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 1.4e-18 97.8 289 31.8
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 2.4e-18 97.1 269 33.1
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 2.4e-18 97.1 434 26.7
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 3.2e-18 96.7 232 35.8
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 3.2e-18 96.7 294 33.0
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 3.2e-18 96.7 136 44.1
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 4.1e-18 96.3 286 33.2
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 4.1e-18 96.3 286 33.2
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 4.1e-18 96.3 217 37.8
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 4.1e-18 96.3 452 28.1
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 5.4e-18 95.9 134 45.5
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 1.2e-17 94.7 134 44.8
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.2e-17 94.7 130 46.2
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.1e-17 94.0 287 32.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 2.7e-17 93.6 450 28.7
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 3.5e-17 93.2 265 32.1
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 4.6e-17 92.8 393 29.0
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 6.0e-17 92.4 378 29.4
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 7.8e-17 92.0 288 31.9
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 7.8e-17 92.0 440 25.9
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 1.0e-16 91.7 285 30.5
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 1.7e-16 90.9 300 29.0
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 1.7e-16 90.9 278 31.3
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 3.0e-16 90.1 270 30.4
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 5.1e-16 89.4 294 32.7
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 6.6e-16 89.0 271 31.7
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 8.6e-16 88.6 133 42.9
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 1.1e-15 88.2 144 41.0
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 1.1e-15 88.2 392 28.3
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 1.9e-15 87.4 307 28.0
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 1.9e-15 87.4 129 41.1
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 3.3e-15 86.7 168 39.9
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.2e-14 84.7 239 33.5
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.6e-14 84.3 289 30.8
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 1.6e-14 84.3 289 30.8
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 2.1e-14 84.0 227 33.5
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 2.8e-14 83.6 138 41.3
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 2.8e-14 83.6 133 40.6
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 3.6e-14 83.2 133 40.6
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 3.6e-14 83.2 125 41.6
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 4.7e-14 82.8 275 32.0
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 4.7e-14 82.8 426 25.8
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.1e-13 81.6 136 40.4
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.1e-13 81.6 133 40.6
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.8e-13 80.9 134 40.3
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.8e-13 80.9 141 41.8
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 3.1e-13 80.1 140 44.3
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 3.1e-13 80.1 195 32.8
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 3.1e-13 80.1 427 26.2
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 5.2e-13 79.3 257 30.4
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 5.2e-13 79.3 133 40.6
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 5.2e-13 79.3 144 40.3
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 6.8e-13 79.0 281 30.6
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 6.8e-13 79.0 429 25.6
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 8.9e-13 78.6 224 33.0
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 1.2e-12 78.2 467 25.9
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.5e-12 77.8 224 35.3
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 2.6e-12 77.0 136 41.2
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 3.4e-12 76.6 477 25.4
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 3.4e-12 76.6 429 25.4
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 3.4e-12 76.6 282 30.1
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 4.4e-12 76.3 470 25.1
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 4.4e-12 76.3 148 36.5
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 5.8e-12 75.9 164 35.4
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 7.6e-12 75.5 425 25.2
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 9.9e-12 75.1 133 39.8
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 1.3e-11 74.7 276 29.3
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 2.9e-11 73.6 282 28.4
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 3.8e-11 73.2 139 38.1
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 1.4e-10 71.2 132 37.9
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 9.3e-10 68.6 415 26.0
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.3e-08 64.7 164 33.5
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 1.9e-07 60.8 126 36.5
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 4.3e-07 59.7 207 25.1
ECA234G0697 Erigeron canadensis HOM05D006741 ORTHO05D008434 6.2e-06 55.8 231 27.3


User provided reference genes

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