Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 1.9e-289 998.8 654 100.0
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 7.8e-174 614.8 692 68.2
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 4.3e-156 555.8 721 64.1
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 2.4e-154 550.1 726 63.6
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 3.1e-146 523.1 717 59.3
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 5.9e-145 518.8 696 59.5
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 6.5e-144 515.4 722 60.2
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 2.8e-139 500.0 705 57.3
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 1.1e-138 498.0 697 58.0
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 1.6e-134 484.2 720 53.6
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 2.4e-130 470.3 731 53.4
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.3e-128 464.5 758 54.2
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 4.4e-124 449.5 730 58.1
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 8.5e-120 435.3 708 55.8
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 2.0e-105 387.5 704 43.9
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 2.0e-105 387.5 704 43.9
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 5.9e-105 386.0 714 42.7
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.0e-104 385.2 678 43.4
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 1.6e-102 377.9 691 43.8
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 3.6e-102 376.7 670 42.2
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 8.0e-102 375.6 719 41.2
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 1.4e-101 374.8 695 43.6
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 6.8e-101 372.5 735 39.5
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 2.0e-100 370.9 708 41.8
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 2.0e-100 370.9 702 43.2
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 2.0e-100 370.9 710 46.2
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 2.6e-100 370.5 512 47.9
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 2.6e-100 370.5 690 47.5
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 3.4e-100 370.2 695 42.9
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 4.4e-100 369.8 534 43.6
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 4.4e-100 369.8 637 48.4
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 5.7e-100 369.4 527 46.7
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 5.7e-100 369.4 694 43.8
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 7.5e-100 369.0 680 43.2
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 7.5e-100 369.0 713 43.1
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 9.8e-100 368.6 697 48.1
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 1.3e-99 368.2 685 48.0
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 1.3e-99 368.2 683 37.6
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 3.7e-99 366.7 717 44.2
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 4.9e-99 366.3 708 40.1
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.4e-98 364.8 709 46.7
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 3.1e-98 363.6 520 42.9
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.2e-97 361.7 699 44.8
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 1.6e-97 361.3 529 45.7
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 1.0e-96 358.6 732 37.4
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 1.0e-96 358.6 699 46.8
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 2.3e-96 357.5 699 50.4
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 2.3e-96 357.5 729 45.3
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 2.9e-96 357.1 678 49.1
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 3.8e-96 356.7 720 39.6
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 5.0e-96 356.3 711 45.9
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 1.1e-95 355.1 694 40.3
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 1.5e-95 354.8 704 43.3
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 9.5e-95 352.1 720 40.7
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 9.5e-95 352.1 658 49.1
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 1.6e-94 351.3 692 44.2
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 2.8e-94 350.5 724 44.2
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 4.7e-94 349.7 696 45.1
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 6.1e-94 349.4 708 43.1
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 1.8e-93 347.8 531 42.6
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 3.0e-93 347.1 708 41.0
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 8.9e-93 345.5 715 44.5
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 2.6e-92 344.0 701 42.9
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 3.4e-92 343.6 721 45.9
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 1.3e-91 341.7 726 46.1
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 2.9e-91 340.5 694 42.5
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 2.4e-90 337.4 724 42.8
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 3.2e-90 337.0 722 46.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 1.2e-89 335.1 710 45.2
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 3.5e-89 333.6 547 42.8
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.0e-88 332.0 694 45.0
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 3.9e-88 330.1 671 45.3
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 8.6e-88 328.9 722 45.0
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 1.1e-87 328.6 719 45.8
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 9.5e-87 325.5 518 42.7
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 1.6e-86 324.7 711 41.9
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 2.1e-86 324.3 532 47.6
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 2.8e-86 323.9 715 41.8
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 6.2e-86 322.8 528 39.8
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 1.1e-85 322.0 528 40.0
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.4e-85 321.6 693 39.5
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 2.3e-85 320.9 699 43.8
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 8.9e-85 318.9 721 39.9
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 5.8e-84 316.2 717 40.2
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 1.7e-83 314.7 670 44.5
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.9e-82 311.2 730 38.5
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 7.8e-81 305.8 306 53.6
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.0e-80 305.4 532 38.0
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.5e-79 301.6 721 37.3
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 1.2e-78 298.5 527 38.0
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 8.1e-78 295.8 726 39.8
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 8.1e-78 295.8 561 37.3
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 1.7e-75 288.1 531 39.5
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 6.0e-73 279.6 527 41.9
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 6.6e-72 276.2 690 34.9
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 9.5e-71 272.3 739 37.8
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.3e-67 261.9 411 43.1
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 3.8e-67 260.4 471 39.7
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.7e-65 254.2 419 43.9
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 2.3e-64 251.1 618 33.8
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 3.9e-64 250.4 477 41.3
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 6.6e-64 249.6 387 50.1
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.1e-63 248.8 448 36.6
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 9.6e-63 245.7 207 64.3
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 9.9e-60 235.7 726 33.2
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 3.5e-57 227.3 724 37.2
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 1.2e-52 212.2 544 33.5
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 5.4e-50 203.4 198 56.1
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.2e-49 202.2 202 50.5
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 3.5e-49 200.7 346 53.8
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 1.5e-47 195.3 434 40.3
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 5.3e-45 186.8 579 29.7
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 2.0e-44 184.9 370 41.6
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 2.5e-42 177.9 222 48.6
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 2.4e-37 161.4 242 38.8
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 2.9e-35 154.5 223 41.3
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 4.2e-34 150.6 352 32.7
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 6.7e-32 143.3 233 39.5
BraA03t12436Z Brassica rapa HOM05D004723 ORTHO05D019910 5.7e-31 140.2 117 74.4
BcaC01g04505 Brassica carinata HOM05D004723 ORTHO05D019910 1.6e-30 138.7 117 72.6
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.7e-30 137.5 281 39.9
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 2.0e-28 131.7 118 59.3
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 3.0e-24 117.9 489 27.2
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 3.4e-20 104.4 99 49.5
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 3.8e-19 100.9 137 49.6
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 5.5e-18 97.1 253 39.5
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 1.2e-17 95.9 252 32.9
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 1.6e-17 95.5 187 36.9
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 1.8e-16 92.0 60 80.0
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 3.0e-16 91.3 66 60.6
C03p39890 Brassica napus HOM05D004723 ORTHO05D019910 5.1e-16 90.5 79 67.1
C03p39780 Brassica napus HOM05D004723 ORTHO05D019910 6.7e-16 90.1 157 49.7
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 1.5e-15 89.0 66 57.6
BolC3t16251H Brassica oleracea HOM05D004723 ORTHO05D019910 6.3e-14 83.6 79 63.3
A03p32680 Brassica napus HOM05D004723 ORTHO05D019910 1.4e-13 82.4 154 44.8
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.1e-13 81.3 98 48.0
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 9.1e-13 79.7 258 27.5
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.2e-12 79.3 213 36.2
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.5e-12 79.0 147 38.1
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 8.5e-11 73.2 246 38.2
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 2.5e-10 71.6 113 44.2
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 8.0e-09 66.6 119 44.5
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 2.3e-08 65.1 69 55.1
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 2.0e-07 62.0 48 56.2
GSVIVG01005594001 Vitis vinifera HOM05D004723 ORTHO05D006176 4.4e-07 60.8 206 37.4
GSVIVG01005388001 Vitis vinifera HOM05D004723 ORTHO05D006176 6.3e-06 57.0 78 41.0


User provided reference genes

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