Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04430 Brassica carinata HOM05D004670 ORTHO05D008020 2.7e-223 778.9 562 100.0
BolC3t16289H Brassica oleracea HOM05D004670 ORTHO05D008020 2.7e-223 778.9 562 100.0
A03p33060 Brassica napus HOM05D004670 ORTHO05D008020 9.7e-197 690.6 568 91.4
C03p40240 Brassica napus HOM05D004670 ORTHO05D008020 3.7e-196 688.7 551 94.2
BraA03t12476Z Brassica rapa HOM05D004670 ORTHO05D008020 3.1e-195 685.6 568 91.2
BcaB04g19393 Brassica carinata HOM05D004670 ORTHO05D008020 4.7e-167 592.0 573 83.6
Sp3g01690 Schrenkiella parvula HOM05D004670 ORTHO05D008020 1.3e-164 583.9 595 81.2
BraSC246t45824Z Brassica rapa HOM05D004670 ORTHO05D008020 3.4e-157 559.3 572 80.9
BolC1t05888H Brassica oleracea HOM05D004670 ORTHO05D008020 2.8e-156 556.2 569 79.8
Thhalv10020352m.g Eutrema salsugineum HOM05D004670 ORTHO05D008020 4.1e-155 552.4 598 72.4
BNapus_Darmor_BZH_scaffold_99p00180 Brassica napus HOM05D004670 ORTHO05D008020 4.2e-152 542.3 572 79.2
Carub.0003s0177 Capsella rubella HOM05D004670 ORTHO05D008020 4.4e-149 532.3 582 76.6
AT3G02650 Arabidopsis thaliana HOM05D004670 ORTHO05D008020 3.7e-148 529.3 577 77.8
AL3G12030 Arabidopsis lyrata HOM05D004670 ORTHO05D008020 7.0e-147 525.0 589 76.7
BNapus_Darmor_BZH_scaffold_122p00150 Brassica napus HOM05D004670 ORTHO05D008020 7.0e-147 525.0 392 76.0
CARHR076670 Cardamine hirsuta HOM05D004670 ORTHO05D008020 1.6e-146 523.9 573 78.5
THA.LOC104802429 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 8.7e-113 411.8 592 66.6
THA.LOC104827168 Tarenaya hassleriana HOM05D004670 ORTHO05D008020 7.4e-104 382.1 589 62.6
QL10p048429 Quercus lobata HOM05D004670 ORTHO05D008020 1.2e-77 295.0 458 61.4
Thecc.06G195000 Theobroma cacao HOM05D004670 ORTHO05D008020 7.7e-77 292.4 572 55.9
Duzib150G0183 Durio zibethinus HOM05D004670 ORTHO05D008020 2.9e-76 290.4 576 57.1
TWI18G1064 Tripterygium wilfordii HOM05D004670 ORTHO05D008020 3.8e-76 290.0 474 56.5
Potri.001G361500 Populus trichocarpa HOM05D004670 ORTHO05D008020 6.1e-74 282.7 403 46.4
Cfa014310 Carpinus fangiana HOM05D004670 ORTHO05D008020 1.4e-73 281.6 575 52.2
Gorai.013G250400 Gossypium raimondii HOM05D004670 ORTHO05D008020 3.3e-72 276.9 416 45.2
MD00G1017000 Malus domestica HOM05D004670 ORTHO05D008020 3.3e-72 276.9 581 53.7
Atru.chr2.211 Acer truncatum HOM05D004670 ORTHO05D008020 7.4e-72 275.8 588 52.6
Gohir.A13G215800 Gossypium hirsutum HOM05D004670 ORTHO05D008020 9.7e-72 275.4 575 54.8
Haze_12758 Corylus avellana HOM05D004670 ORTHO05D008020 1.3e-71 275.0 405 45.2
COL.COLO4_09284 Corchorus olitorius HOM05D004670 ORTHO05D008020 2.8e-71 273.9 560 51.8
Sabra16G0238400 Salix brachista HOM05D004670 ORTHO05D008020 4.8e-71 273.1 568 53.9
Gohir.D13G219500 Gossypium hirsutum HOM05D004670 ORTHO05D008020 6.3e-71 272.7 416 44.2
QL10p044086 Quercus lobata HOM05D004670 ORTHO05D008020 6.3e-71 272.7 288 52.8
Haze_20607 Corylus avellana HOM05D004670 ORTHO05D008020 8.2e-71 272.3 408 44.9
CANSAT54G2504 Cannabis sativa HOM05D004670 ORTHO05D008020 1.1e-70 271.9 569 53.4
Dinv17145 Davidia involucrata HOM05D004670 ORTHO05D008020 1.5e-69 268.1 495 58.2
CiPaw.07G084800 Carya illinoinensis HOM05D004670 ORTHO05D008020 2.0e-69 267.7 613 48.9
Rhsim05G0163600 Rhododendron simsii HOM05D004670 ORTHO05D008020 2.6e-69 267.3 382 45.3
Prupe.6G365500 Prunus persica HOM05D004670 ORTHO05D008020 3.4e-69 266.9 284 51.4
TAR362G1162 Trochodendron aralioides HOM05D004670 ORTHO05D008020 4.2e-67 260.0 466 55.4
Nitab4.5_0001348g0230 Nicotiana tabacum HOM05D004670 ORTHO05D008020 2.7e-66 257.3 548 52.2
CSS0027504 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.9e-66 255.8 365 43.8
CSS0030730 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 7.9e-66 255.8 365 43.8
Nitab4.5_0008751g0030 Nicotiana tabacum HOM05D004670 ORTHO05D008020 2.3e-65 254.2 544 49.8
Ciclev10004046m.g Citrus clementina HOM05D004670 ORTHO05D008020 3.9e-65 253.4 572 51.2
Nn1g09528 Nelumbo nucifera HOM05D004670 ORTHO05D008020 2.0e-64 251.1 338 44.4
Sed0002677 Sechium edule HOM05D004670 ORTHO05D008020 2.0e-64 251.1 579 48.2
Manes.13G000200 Manihot esculenta HOM05D004670 ORTHO05D008020 3.3e-64 250.4 418 40.9
Sopen11g001140 Solanum pennellii HOM05D004670 ORTHO05D008020 3.3e-64 250.4 586 46.8
Peaxi162Scf00066g00021 Petunia axillaris HOM05D004670 ORTHO05D008020 7.4e-64 249.2 535 49.5
PGSC0003DMG400006026 Solanum tuberosum HOM05D004670 ORTHO05D008020 4.8e-63 246.5 573 47.5
Solyc11g005140.1 Solanum lycopersicum HOM05D004670 ORTHO05D008020 6.3e-63 246.1 586 46.1
Lj8P583T10 Lonicera japonica HOM05D004670 ORTHO05D008020 1.1e-62 245.4 301 46.5
FAN14G3835 Fragaria x ananassa HOM05D004670 ORTHO05D008020 1.8e-62 244.6 572 53.1
FvH4_6g27990 Fragaria vesca HOM05D004670 ORTHO05D008020 5.3e-62 243.0 572 53.1
AUR62025405 Chenopodium quinoa HOM05D004670 ORTHO05D008020 2.6e-61 240.7 534 50.2
MELO3C008575.2 Cucumis melo HOM05D004670 ORTHO05D008020 3.5e-61 240.4 545 48.3
AUR62008838 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.3e-60 238.4 543 49.9
Glyma.15G017400 Glycine max HOM05D004670 ORTHO05D008020 1.3e-60 238.4 454 55.7
EL10Ac4g10032 Beta vulgaris HOM05D004670 ORTHO05D008020 2.2e-60 237.7 579 48.4
CAN.G716.1 Capsicum annuum HOM05D004670 ORTHO05D008020 3.8e-60 236.9 545 48.1
CsaV3_2G010440 Cucumis sativus L. HOM05D004670 ORTHO05D008020 3.8e-60 236.9 540 51.1
EL10Ac7g17697 Beta vulgaris HOM05D004670 ORTHO05D008020 4.2e-59 233.4 420 37.9
Aqoxy3G03703 Aquilegia oxysepala HOM05D004670 ORTHO05D008020 5.5e-59 233.0 278 45.0
Phvul.008G212400 Phaseolus vulgaris HOM05D004670 ORTHO05D008020 5.5e-59 233.0 559 48.8
SHI13694 Sapria himalayana HOM05D004670 ORTHO05D008020 5.5e-59 233.0 330 40.6
Sc16g0010690 Simmondsia chinensis HOM05D004670 ORTHO05D008020 1.6e-58 231.5 390 38.7
MBI07_g36706_MAGBIO Magnolia biondii HOM05D004670 ORTHO05D008020 2.1e-58 231.1 326 42.0
Glyma.13G356700 Glycine max HOM05D004670 ORTHO05D008020 3.6e-58 230.3 475 54.3
Psat5g107920 Pisum sativum HOM05D004670 ORTHO05D008020 4.7e-58 229.9 569 47.3
VMungo0647G0492 Vigna mungo HOM05D004670 ORTHO05D008020 1.0e-57 228.8 544 50.6
Ah.06g195210 Amaranthus hybridus HOM05D004670 ORTHO05D008020 1.4e-57 228.4 395 39.0
arahy.Tifrunner.gnm1.ann1.H9JUXY Arachis hypogaea HOM05D004670 ORTHO05D008020 6.7e-57 226.1 558 46.2
RcHm_v2.0_Chr2g0131651 Rosa chinensis HOM05D004670 ORTHO05D008020 1.1e-56 225.3 576 51.0
PGR119G2020 Punica granatum HOM05D004670 ORTHO05D008020 2.0e-56 224.6 455 54.3
DCAR_024376 Daucus carota HOM05D004670 ORTHO05D008020 4.4e-56 223.4 408 39.2
Eucgr.L01231 Eucalyptus grandis HOM05D004670 ORTHO05D008020 1.7e-55 221.5 455 53.0
CDE06G0776 Ceratophyllum demersum HOM05D004670 ORTHO05D008020 2.2e-55 221.1 411 38.7
Eucgr.B01443 Eucalyptus grandis HOM05D004670 ORTHO05D008020 2.8e-55 220.7 455 52.5
Migut.C01066 Erythranthe guttata HOM05D004670 ORTHO05D008020 6.3e-55 219.5 377 40.8
SalBow7G4343 Salvia bowleyana HOM05D004670 ORTHO05D008020 6.3e-55 219.5 246 47.2
MSTRG.25359 Avicennia marina HOM05D004670 ORTHO05D008020 8.2e-55 219.2 411 38.7
TPR.G23340 Trifolium pratense HOM05D004670 ORTHO05D008020 8.2e-55 219.2 574 49.5
SalBow7G3652 Salvia bowleyana HOM05D004670 ORTHO05D008020 1.4e-54 218.4 246 47.2
AUR62044648 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.8e-54 218.0 373 40.5
SGA_v2.0_scaffold52G18920 Striga asiatica HOM05D004670 ORTHO05D008020 9.1e-54 215.7 312 42.0
Lsat_1_v5_gn_7_7580 Lactuca sativa HOM05D004670 ORTHO05D008020 2.7e-53 214.2 585 45.6
Ca_16311_v3 Cicer arietinum L. HOM05D004670 ORTHO05D008020 5.9e-53 213.0 577 40.6
Oeu040399.1 Olea europaea HOM05D004670 ORTHO05D008020 5.0e-52 209.9 418 38.5
ECA236G4653 Erigeron canadensis HOM05D004670 ORTHO05D008020 1.6e-50 204.9 315 40.0
Medtr3g081310 Medicago truncatula HOM05D004670 ORTHO05D008020 1.6e-50 204.9 568 49.1
PSO017G2252 Papaver somniferum HOM05D004670 ORTHO05D008020 1.6e-50 204.9 412 35.9
ECA246G0724 Erigeron canadensis HOM05D004670 ORTHO05D008020 3.6e-50 203.8 277 43.7
PSO675G7837 Papaver somniferum HOM05D004670 ORTHO05D008020 3.6e-50 203.8 411 36.0
TPR.G9216 Trifolium pratense HOM05D004670 ORTHO05D008020 4.0e-49 200.3 335 39.1
HanXRQChr16g0532601 Helianthus annuus HOM05D004670 ORTHO05D008020 8.8e-49 199.1 576 46.0
Cc10_g12810 Coffea canephora HOM05D004670 ORTHO05D008020 2.0e-48 198.0 314 39.5
HanXRQChr02g0056371 Helianthus annuus HOM05D004670 ORTHO05D008020 9.8e-48 195.7 572 45.5
ATR0743G160 Amborella trichopoda HOM05D004670 ORTHO05D008020 1.7e-47 194.9 353 36.0
Lalb_Chr13g0290441 Lupinus albus HOM05D004670 ORTHO05D008020 3.7e-47 193.7 564 40.6
Lj2g0025819 Lotus japonicus HOM05D004670 ORTHO05D008020 9.1e-46 189.1 402 35.8
HPP92_012838 Vanilla planifolia HOM05D004670 ORTHO05D008020 3.2e-43 180.6 383 35.2
Dinv17144 Davidia involucrata HOM05D004670 ORTHO05D008020 1.0e-41 175.6 246 39.8
Cpa.g.sc127.45 Carica papaya HOM05D004670 ORTHO05D008020 3.4e-40 170.6 487 52.0
Zm00001eb144640 Zea mays HOM05D004670 ORTHO05D008020 5.9e-37 159.8 273 35.5
Thecc.09G224400 Theobroma cacao HOM05D004670 ORTHO05D008020 1.6e-34 151.8 240 41.7
PGR119G2157 Punica granatum HOM05D004670 ORTHO05D008020 1.5e-32 145.2 240 36.7
SEGI_06910 Sequoiadendron giganteum HOM05D004670 ORTHO05D008020 3.0e-28 131.0 390 27.2
Lj6g0018960 Lotus japonicus HOM05D004670 ORTHO05D008020 2.5e-27 127.9 397 29.7
TPR.G17089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.6e-26 125.2 280 35.0
TPR.G5228 Trifolium pratense HOM05D002798 ORTHO05D003052 2.3e-25 121.3 263 35.4
CSS0025547 Camellia sinensis var. sinensis HOM05D004670 ORTHO05D008020 2.9e-23 114.4 252 34.9
AUR62000265 Chenopodium quinoa HOM05D004670 ORTHO05D008020 6.4e-23 113.2 346 30.6
Cpa.g.sc35.62 Carica papaya HOM05D004670 ORTHO05D022223 8.3e-23 112.8 177 41.2
Medtr5g092030 Medicago truncatula HOM05D004670 ORTHO05D014137 2.3e-20 104.8 273 31.1
Medtr5g088900 Medicago truncatula HOM05D004670 ORTHO05D014137 8.1e-18 96.3 254 29.5
Medtr8g105355 Medicago truncatula HOM05D004670 ORTHO05D014137 9.8e-16 89.4 180 34.4
Medtr8g105450 Medicago truncatula HOM05D004670 ORTHO05D014137 9.8e-16 89.4 180 34.4
AUR62008837 Chenopodium quinoa HOM05D004670 ORTHO05D008020 5.4e-14 83.6 89 43.8
AUR62006613 Chenopodium quinoa HOM05D004670 ORTHO05D008020 1.0e-12 79.3 179 33.0
Cpa.g.c31883 Carica papaya HOM05D004670 ORTHO05D022223 1.3e-12 79.0 110 44.5
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 4.3e-11 73.9 212 27.8
Nn1g08093 Nelumbo nucifera HOM05D007661 ORTHO05D009671 4.3e-11 73.9 156 28.8
Gorai.013G189900 Gossypium raimondii HOM05D007661 ORTHO05D009671 1.6e-10 72.0 173 27.7
TPR.G25089 Trifolium pratense HOM05D004670 ORTHO05D014137 1.6e-10 72.0 162 34.0
PSO063G2745 Papaver somniferum HOM05D007661 ORTHO05D009671 2.1e-10 71.6 156 27.6
PSO017G1759 Papaver somniferum HOM05D007661 ORTHO05D009671 4.7e-10 70.5 156 26.9
TAR362G0078 Trochodendron aralioides HOM05D007661 ORTHO05D009671 4.7e-10 70.5 156 28.2
Gohir.D13G171200 Gossypium hirsutum HOM05D007661 ORTHO05D009671 8.1e-10 69.7 178 26.4
Gorai.013G189200 Gossypium raimondii HOM05D007661 ORTHO05D009671 1.1e-09 69.3 215 26.0
TPR.G5188 Trifolium pratense HOM05D004670 ORTHO05D008020 1.1e-09 69.3 167 31.7
A06p17960 Brassica napus HOM05D000424 ORTHO05D000355 5.2e-09 67.0 219 27.4
BraA06t24887Z Brassica rapa HOM05D000424 ORTHO05D000355 5.2e-09 67.0 219 27.4
Hma1.2p1_0060F.1_g032840 Hydrangea macrophylla HOM05D006218 ORTHO05D007338 2.0e-08 65.1 193 25.4
QL02p015096 Quercus lobata HOM05D006218 ORTHO05D007338 3.4e-08 64.3 210 25.2
Sopen09g035780 Solanum pennellii HOM05D007661 ORTHO05D009671 3.4e-08 64.3 145 26.2
HanXRQChr14g0453291 Helianthus annuus HOM05D006596 ORTHO05D008497 4.4e-08 63.9 250 22.8
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 7.6e-08 63.2 223 26.5
Gorai.009G186600 Gossypium raimondii HOM05D006218 ORTHO05D007338 2.2e-07 61.6 172 26.2
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 2.9e-07 61.2 245 24.5
Ah.06g194670 Amaranthus hybridus HOM05D006596 ORTHO05D008497 3.8e-07 60.8 274 23.0
CAN.G1202.7 Capsicum annuum HOM05D006218 ORTHO05D007338 4.9e-07 60.5 151 27.8
COL.COLO4_38175 Corchorus olitorius HOM05D007661 ORTHO05D009671 4.9e-07 60.5 169 25.4
QL02p015030 Quercus lobata HOM05D006218 ORTHO05D007338 4.9e-07 60.5 210 24.3
Gohir.A05G178200 Gossypium hirsutum HOM05D006218 ORTHO05D007338 6.4e-07 60.1 172 25.6
arahy.Tifrunner.gnm1.ann1.9489MQ Arachis hypogaea HOM05D006218 ORTHO05D007338 8.4e-07 59.7 182 26.4
Nitab4.5_0003027g0060 Nicotiana tabacum HOM05D006218 ORTHO05D007338 1.1e-06 59.3 185 23.2
DCAR_006421 Daucus carota HOM05D006218 ORTHO05D007338 1.9e-06 58.5 274 24.8
Gohir.D05G181600 Gossypium hirsutum HOM05D006218 ORTHO05D007338 1.9e-06 58.5 172 25.6
Atru.BG.229.p Acer truncatum HOM05D006218 ORTHO05D007338 3.2e-06 57.8 152 27.0
Medtr5g088510 Medicago truncatula HOM05D004783 ORTHO05D005581 5.4e-06 57.0 135 25.9
VMungo1080G1842 Vigna mungo HOM05D004670 ORTHO05D014137 7.1e-06 56.6 40 65.0
Hma1.2p1_1765F.1_g301480 Hydrangea macrophylla HOM05D000424 ORTHO05D000355 9.2e-06 56.2 132 28.8
Lj1g0010915 Lotus japonicus HOM05D006596 ORTHO05D008497 9.2e-06 56.2 218 23.9
TPR.G10813 Trifolium pratense HOM05D004670 ORTHO05D008020 9.2e-06 56.2 67 43.3


User provided reference genes

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