Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.8e-60 235.7 118 100.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-58 229.6 119 98.3
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-58 229.6 119 98.3
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.3e-58 229.6 119 98.3
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.7e-58 229.2 119 97.5
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-54 216.5 118 91.5
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.2e-49 198.4 123 84.6
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 3.9e-47 191.4 121 82.6
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 3.9e-47 191.4 125 80.0
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 5.0e-47 191.0 125 79.2
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 8.1e-45 183.7 120 80.8
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 1.4e-44 183.0 126 75.4
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 4.0e-44 181.4 122 79.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 5.2e-44 181.0 119 79.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.5e-43 179.5 120 78.3
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.5e-43 179.5 120 78.3
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 2.0e-43 179.1 121 80.2
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 9.2e-41 170.2 120 76.7
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-29 132.5 123 58.5
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 3.6e-29 131.7 118 57.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 8.9e-28 127.1 130 55.4
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 8.9e-28 127.1 130 55.4
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.2e-27 126.7 122 56.6
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.5e-27 126.3 124 54.8
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 3.4e-27 125.2 130 54.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 3.4e-27 125.2 130 54.6
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 4.4e-27 124.8 127 56.7
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.2e-26 122.5 122 55.7
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 6.4e-26 120.9 118 51.7
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.0e-23 113.6 118 48.3
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 1.7e-23 112.8 125 49.6
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.1e-22 110.2 130 47.7
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 1.9e-22 109.4 126 46.0
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.3e-21 106.7 100 50.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.6e-21 106.3 132 47.7
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.6e-21 106.3 117 49.6
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 1.6e-21 106.3 127 49.6
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 2.1e-21 105.9 99 55.6
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 3.6e-21 105.1 118 52.5
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.6e-21 105.1 128 46.9
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 4.8e-21 104.8 129 47.3
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 6.2e-21 104.4 131 45.8
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 8.1e-21 104.0 137 48.2
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 8.1e-21 104.0 116 46.6
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 8.1e-21 104.0 126 45.2
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.1e-20 103.6 110 52.7
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.4e-20 103.2 126 45.2
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 1.8e-20 102.8 127 47.2
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.8e-20 102.8 126 45.2
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 4.0e-20 101.7 125 46.4
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 5.3e-20 101.3 120 45.0
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 6.9e-20 100.9 103 53.4
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 9.0e-20 100.5 83 56.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.0e-19 99.4 123 44.7
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 7.6e-19 97.4 117 45.3
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 7.6e-19 97.4 130 47.7
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.8e-18 95.1 129 46.5
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.8e-18 95.1 128 45.3
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 4.9e-18 94.7 125 41.6
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 6.4e-18 94.4 85 51.8
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 6.4e-18 94.4 128 41.4
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 1.1e-17 93.6 87 54.0
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.1e-17 93.6 97 48.5
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 131 45.8
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.4e-17 93.2 129 42.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 2.4e-17 92.4 131 45.8
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 3.2e-17 92.0 127 41.7
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.2e-17 91.7 127 40.9
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.2e-17 91.7 127 40.9
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 4.2e-17 91.7 125 42.4
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 4.2e-17 91.7 126 43.7
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 7.1e-17 90.9 121 47.9
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 7.1e-17 90.9 132 45.5
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 9.3e-17 90.5 124 46.0
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 9.3e-17 90.5 127 41.7
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.2e-16 90.1 90 50.0
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.2e-16 90.1 132 47.7
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.6e-16 89.7 96 45.8
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.6e-16 89.7 89 53.9
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 2.1e-16 89.4 125 46.4
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.7e-16 89.0 103 47.6
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 3.5e-16 88.6 129 45.7
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 3.5e-16 88.6 86 53.5
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 3.5e-16 88.6 107 43.9
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 4.6e-16 88.2 123 47.2
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 6.0e-16 87.8 117 45.3
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 7.9e-16 87.4 103 47.6
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.0e-15 87.0 93 49.5
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.3e-15 86.7 106 50.0
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.3e-15 86.7 130 42.3
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.3e-15 85.9 123 45.5
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.9e-15 85.1 120 43.3
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 5.1e-15 84.7 127 43.3
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 6.7e-15 84.3 121 47.1
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 6.7e-15 84.3 83 49.4
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.7e-15 84.3 97 46.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.7e-15 84.3 97 46.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.7e-15 84.3 97 46.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 6.7e-15 84.3 97 46.4
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.7e-15 84.3 77 57.1
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 6.7e-15 84.3 93 47.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 8.7e-15 84.0 111 42.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.1e-14 83.6 84 52.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 1.1e-14 83.6 123 39.0
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.1e-14 83.6 125 44.8
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.5e-14 83.2 122 42.6
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.5e-14 83.2 125 44.8
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.5e-14 83.2 85 54.1
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 1.9e-14 82.8 130 38.5
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.9e-14 82.8 130 44.6
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.5e-14 82.4 98 46.9
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 2.5e-14 82.4 84 48.8
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.5e-14 82.4 79 51.9
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 3.3e-14 82.0 98 46.9
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 3.3e-14 82.0 79 53.2
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 3.3e-14 82.0 96 45.8
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 5.6e-14 81.3 84 53.6
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 5.6e-14 81.3 84 53.6
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.4e-14 80.9 131 42.7
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 9.6e-14 80.5 100 44.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-13 80.1 124 43.5
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 1.3e-13 80.1 124 37.9
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.3e-13 80.1 99 46.5
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.6e-13 79.7 102 45.1
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 2.1e-13 79.3 103 40.8
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 3.7e-13 78.6 123 39.8
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 4.8e-13 78.2 107 44.9
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 6.2e-13 77.8 81 51.9
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 6.2e-13 77.8 106 40.6
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 8.1e-13 77.4 124 41.9
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 8.1e-13 77.4 118 42.4
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 1.1e-12 77.0 82 48.8
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.4e-12 76.6 80 47.5
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.4e-12 76.6 82 48.8
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.8e-12 76.3 79 48.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.8e-12 76.3 83 48.2
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 1.8e-12 76.3 105 41.0
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 3.1e-12 75.5 87 46.0
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 4.0e-12 75.1 100 40.0
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 4.0e-12 75.1 119 37.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 5.3e-12 74.7 77 51.9
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 5.3e-12 74.7 103 44.7
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 5.3e-12 74.7 60 56.7
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 6.9e-12 74.3 88 43.2
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 6.9e-12 74.3 78 53.8
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 9.0e-12 73.9 90 45.6
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.0e-11 72.8 113 38.1
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.0e-11 72.8 122 39.3
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.6e-11 72.4 89 44.9
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.6e-11 72.4 77 44.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 2.6e-11 72.4 79 49.4
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.5e-11 71.6 93 40.9
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.5e-11 71.6 93 40.9
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 4.5e-11 71.6 87 44.8
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 5.8e-11 71.2 84 46.4
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 7.6e-11 70.9 99 40.4
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.6e-11 70.9 118 37.3
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 2.9e-10 68.9 81 44.4
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.9e-10 68.9 96 38.5
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.9e-10 68.2 81 45.7
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 6.4e-10 67.8 135 38.5
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 6.4e-10 67.8 119 38.7
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.1e-09 67.0 95 44.2
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 1.4e-09 66.6 82 46.3
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.4e-09 66.6 123 40.7
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.4e-09 65.9 82 45.1
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 3.2e-09 65.5 115 37.4
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.2e-09 65.1 88 43.2
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 5.5e-09 64.7 114 36.8
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 5.5e-09 64.7 82 47.6
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-08 63.5 84 42.9
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.2e-08 63.5 126 38.9
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.6e-08 63.2 126 40.5
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 2.7e-08 62.4 123 38.2
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.5e-08 62.0 90 41.1
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.8e-07 59.7 39 61.5
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.8e-07 59.7 82 41.5
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.8e-07 59.7 86 38.4
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 2.3e-07 59.3 87 37.9
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.0e-07 58.9 75 46.7
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.9e-07 58.5 118 38.1
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.5e-06 56.6 102 36.3
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.3e-06 55.5 97 41.2
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.3e-06 55.1 117 35.0
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 5.6e-06 54.7 78 34.6


User provided reference genes

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