Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 7.6e-122 440.7 245 100.0
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 7.6e-122 440.7 245 100.0
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 7.6e-122 440.7 245 100.0
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 7.9e-119 430.6 245 98.0
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 3.0e-118 428.7 245 92.7
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 3.4e-106 388.7 253 85.8
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.4e-104 383.3 250 84.0
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.8e-102 376.3 249 82.3
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 1.5e-101 373.2 249 79.1
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.9e-101 372.9 249 81.9
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 1.9e-101 372.9 246 79.7
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 3.3e-101 372.1 247 82.2
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.3e-101 372.1 249 80.7
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 5.7e-101 371.3 249 79.5
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 6.9e-99 364.4 246 76.0
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.5e-98 363.2 246 76.0
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.5e-98 363.2 243 77.8
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.0e-98 362.8 245 78.0
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 3.4e-98 362.1 246 76.4
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.3e-97 360.1 244 78.3
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 1.7e-97 359.8 244 78.3
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 3.8e-97 358.6 244 77.9
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 3.8e-97 358.6 244 77.9
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 1.2e-95 353.6 250 76.4
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 5.1e-94 348.2 246 76.8
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.9e-93 346.3 243 74.9
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 6.3e-92 341.3 246 74.4
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 2.4e-83 312.8 246 68.3
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 9.1e-83 310.8 247 67.6
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 1.5e-82 310.1 247 66.4
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 4.5e-82 308.5 242 66.5
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 7.7e-82 307.8 246 65.0
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 1.0e-81 307.4 248 65.7
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 1.3e-81 307.0 244 65.2
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.9e-81 305.8 249 64.7
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 2.9e-81 305.8 246 64.6
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 3.8e-81 305.4 253 65.2
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 5.0e-81 305.1 245 66.1
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.5e-81 304.3 250 65.2
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.1e-80 303.9 247 65.6
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 1.4e-80 303.5 246 65.9
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.4e-80 303.5 244 64.8
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 1.9e-80 303.1 247 66.8
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 3.2e-80 302.4 248 64.5
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.2e-80 302.4 244 64.3
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 4.2e-80 302.0 245 66.1
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 5.5e-80 301.6 245 66.1
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.4e-80 300.8 244 63.9
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 9.4e-80 300.8 244 64.3
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 1.2e-79 300.4 245 65.7
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 1.2e-79 300.4 246 65.9
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.6e-79 300.1 244 64.8
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 2.7e-79 299.3 245 65.3
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 2.7e-79 299.3 246 64.2
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 7.9e-79 297.7 246 65.0
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.8e-78 296.6 245 62.4
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 1.8e-78 296.6 247 64.0
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 1.8e-78 296.6 250 64.8
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.3e-78 296.2 245 62.0
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.0e-78 295.8 245 62.4
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 3.0e-78 295.8 246 65.0
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 5.2e-78 295.0 266 61.7
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 5.2e-78 295.0 253 62.8
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 1.5e-77 293.5 253 62.5
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 2.6e-77 292.7 244 63.5
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 4.4e-77 292.0 246 64.6
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 5.7e-77 291.6 246 63.8
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 7.4e-77 291.2 249 63.9
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 9.7e-77 290.8 253 62.1
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 1.7e-76 290.0 243 63.0
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.2e-76 289.7 246 62.2
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.8e-76 289.3 245 62.9
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 2.8e-76 289.3 256 64.1
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 2.8e-76 289.3 247 63.2
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 3.7e-76 288.9 245 63.3
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 4.8e-76 288.5 254 63.0
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 4.8e-76 288.5 255 61.2
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.1e-75 287.3 253 61.3
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 1.8e-75 286.6 253 62.1
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 1.8e-75 286.6 244 62.3
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.4e-75 286.2 249 63.5
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 3.1e-75 285.8 245 62.9
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 7.0e-75 284.6 244 63.1
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 9.1e-75 284.3 253 62.5
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 1.6e-74 283.5 257 62.6
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 1.6e-74 283.5 250 61.6
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 5.9e-74 281.6 245 62.9
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.9e-74 281.6 245 63.3
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.9e-74 281.6 245 62.9
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.9e-74 281.6 245 62.9
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.9e-74 281.6 245 62.9
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 1.7e-73 280.0 247 61.1
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.7e-73 280.0 249 62.7
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 2.2e-73 279.6 246 61.8
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.9e-73 279.3 245 62.9
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.8e-73 278.9 253 59.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.8e-73 278.9 253 61.3
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 5.0e-73 278.5 248 59.7
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 6.5e-73 278.1 246 59.8
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 6.5e-73 278.1 248 60.5
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 1.5e-72 276.9 244 61.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 7.2e-72 274.6 254 59.8
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 7.2e-72 274.6 200 69.5
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 2.1e-71 273.1 257 59.5
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 3.6e-71 272.3 257 59.9
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 4.7e-71 271.9 257 59.9
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 1.8e-70 270.0 313 51.4
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 2.3e-70 269.6 247 60.3
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 8.8e-70 267.7 254 58.3
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.5e-69 266.9 230 62.6
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 4.4e-69 265.4 254 57.1
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 7.5e-69 264.6 234 60.7
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 9.7e-69 264.2 253 60.1
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 9.7e-69 264.2 241 61.8
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 2.8e-68 262.7 237 62.9
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 8.2e-68 261.2 242 57.9
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 5.3e-67 258.5 242 59.9
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 7.0e-67 258.1 239 59.0
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.6e-66 256.9 234 59.0
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.6e-66 256.9 265 57.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 3.5e-66 255.8 234 59.0
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 4.5e-66 255.4 202 65.8
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 1.0e-65 254.2 321 49.8
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.2e-65 253.1 202 64.4
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 6.5e-65 251.5 238 57.6
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 1.1e-64 250.8 248 59.3
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.2e-63 247.3 259 58.7
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 1.2e-61 240.7 244 54.1
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 3.4e-61 239.2 218 59.2
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 3.7e-60 235.7 226 58.4
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 8.3e-60 234.6 242 52.1
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.1e-59 234.2 230 55.7
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.2e-58 230.7 244 52.0
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.3e-57 226.5 237 53.2
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 5.0e-57 225.3 300 47.0
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 4.7e-55 218.8 244 54.1
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 6.1e-55 218.4 250 56.4
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 6.8e-54 214.9 141 73.0
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.5e-53 213.8 148 70.3
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.9e-52 208.8 228 50.9
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.4e-51 206.5 237 49.8
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 5.4e-51 205.3 136 72.8
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.6e-50 203.8 246 51.6
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 8.9e-46 188.0 166 57.2
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.0e-45 186.8 169 58.0
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 2.0e-45 186.8 212 50.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.3e-41 173.3 286 40.2
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 3.0e-41 172.9 112 72.3
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 6.6e-41 171.8 266 42.1
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 4.3e-40 169.1 117 71.8
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.8e-38 161.8 199 48.2
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 8.6e-33 144.8 166 44.0
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 3.4e-29 132.9 263 34.2
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 1.0e-25 121.3 125 58.4
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 9.5e-24 114.8 95 57.9
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 1.4e-22 110.9 88 56.8
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 8.9e-22 108.2 81 74.1
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 1.2e-21 107.8 125 51.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 1.4e-19 100.9 69 68.1
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 7.8e-18 95.1 90 57.8
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 1.7e-17 94.0 110 36.4
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 4.3e-16 89.4 93 45.2
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 6.4e-12 75.5 76 57.9
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.7e-10 70.1 76 53.9
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 2.7e-10 70.1 152 33.6
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.0e-09 68.2 133 42.1
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 3.9e-09 66.2 81 44.4
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 2.5e-08 63.5 120 40.8


User provided reference genes

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