Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04379 Brassica carinata HOM05D004244 ORTHO05D004964 2.1e-136 489.2 270 100.0
C03p40780 Brassica napus HOM05D004244 ORTHO05D004964 8.9e-132 473.8 270 97.0
BolC3t16346H Brassica oleracea HOM05D004244 ORTHO05D004964 8.9e-132 473.8 270 97.0
A03p33580 Brassica napus HOM05D004244 ORTHO05D004964 4.8e-117 424.9 271 90.8
BraA03t12533Z Brassica rapa HOM05D004244 ORTHO05D004964 9.0e-116 420.6 271 88.9
BcaB04g19340 Brassica carinata HOM05D004244 ORTHO05D004964 6.0e-96 354.8 278 80.6
Sp3g03210 Schrenkiella parvula HOM05D004244 ORTHO05D004964 2.6e-91 339.3 276 75.4
Thhalv10021319m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 6.7e-79 298.1 277 69.3
CARHR078490 Cardamine hirsuta HOM05D004244 ORTHO05D004964 4.5e-75 285.4 284 66.9
AL3G14300 Arabidopsis lyrata HOM05D004244 ORTHO05D004964 1.4e-73 280.4 282 67.0
Carub.0003s0352 Capsella rubella HOM05D004244 ORTHO05D004964 5.7e-70 268.5 283 65.7
AT3G04310 Arabidopsis thaliana HOM05D004244 ORTHO05D004964 3.7e-69 265.8 284 65.5
Aa31LG5G14830 Aethionema arabicum HOM05D004244 ORTHO05D004964 1.6e-59 233.8 289 58.8
Ciclev10021373m.g Citrus clementina HOM05D004244 ORTHO05D004964 3.6e-24 116.3 286 40.9
Manes.08G141600 Manihot esculenta HOM05D004244 ORTHO05D004964 2.3e-23 113.6 234 38.0
Cpa.g.sc756.3 Carica papaya HOM05D004244 ORTHO05D004964 6.8e-23 112.1 187 43.9
TAR633G1781 Trochodendron aralioides HOM05D004244 ORTHO05D004964 8.9e-23 111.7 234 34.6
Gohir.D11G254600 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.5e-22 110.9 250 37.6
Gorai.007G273200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.5e-22 110.9 250 37.6
Atru.chr2.1111 Acer truncatum HOM05D004244 ORTHO05D004964 2.0e-22 110.5 295 36.6
C05p62860 Brassica napus HOM05D004244 ORTHO05D004964 5.8e-22 109.0 86 70.9
BolC5t34941H Brassica oleracea HOM05D004244 ORTHO05D004964 5.8e-22 109.0 86 70.9
Duzib106G0844 Durio zibethinus HOM05D004244 ORTHO05D004964 5.8e-22 109.0 184 44.6
Potri.019G023400 Populus trichocarpa HOM05D004244 ORTHO05D004964 5.8e-22 109.0 235 39.6
PGR031G0411 Punica granatum HOM05D004244 ORTHO05D004964 9.8e-22 108.2 187 42.2
Thecc.05G266700 Theobroma cacao HOM05D004244 ORTHO05D004964 3.2e-20 103.2 246 37.0
Rhsim09G0132600 Rhododendron simsii HOM05D004244 ORTHO05D004964 5.4e-20 102.4 246 38.6
GSVIVG01026322001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.4e-20 102.4 182 41.8
MBI07_g19046_MAGBIO Magnolia biondii HOM05D004244 ORTHO05D004964 9.2e-20 101.7 266 34.2
Sabra19G0033400 Salix brachista HOM05D004244 ORTHO05D004964 2.1e-19 100.5 178 39.9
MD16G1230800 Malus domestica HOM05D004244 ORTHO05D004964 2.3e-18 97.1 192 37.5
Eucgr.B01738 Eucalyptus grandis HOM05D004244 ORTHO05D004964 3.0e-18 96.7 196 39.8
Gohir.A11G244500 Gossypium hirsutum HOM05D004244 ORTHO05D004964 8.6e-18 95.1 182 41.8
Aqoxy5G00098 Aquilegia oxysepala HOM05D004244 ORTHO05D004964 1.1e-17 94.7 242 34.7
A05p43120 Brassica napus HOM05D004244 ORTHO05D004964 1.1e-17 94.7 89 62.9
Manes.03G156200 Manihot esculenta HOM05D004244 ORTHO05D004964 1.1e-17 94.7 190 35.3
CsaV3_2G012190 Cucumis sativus L. HOM05D004244 ORTHO05D004964 1.9e-17 94.0 247 32.4
Actinidia34761 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.3e-17 93.2 187 34.2
GSVIVG01001856001 Vitis vinifera HOM05D004244 ORTHO05D004964 5.6e-17 92.4 285 34.0
Prupe.1G052600 Prunus persica HOM05D004244 ORTHO05D004964 1.2e-16 91.3 184 38.0
MD13G1225800 Malus domestica HOM05D004244 ORTHO05D004964 1.6e-16 90.9 191 37.2
COL.COLO4_16006 Corchorus olitorius HOM05D004244 ORTHO05D004964 2.1e-16 90.5 189 36.5
FvH4_4g05190 Fragaria vesca HOM05D004244 ORTHO05D004964 2.1e-16 90.5 193 37.3
Ca_11893_v3 Cicer arietinum L. HOM05D004244 ORTHO05D004964 3.6e-16 89.7 179 38.5
MELO3C023072.2 Cucumis melo HOM05D004244 ORTHO05D004964 3.6e-16 89.7 247 32.0
Cfa014824 Carpinus fangiana HOM05D004244 ORTHO05D004964 6.2e-16 89.0 191 37.2
Nitab4.5_0000841g0060 Nicotiana tabacum HOM05D004244 ORTHO05D004964 6.2e-16 89.0 192 35.4
Nn3g19830 Nelumbo nucifera HOM05D004244 ORTHO05D004964 8.1e-16 88.6 246 33.3
Nitab4.5_0008594g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.1e-16 88.6 185 36.8
Haze_11497 Corylus avellana HOM05D004244 ORTHO05D004964 1.1e-15 88.2 178 38.8
FAN12G2846 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.1e-15 88.2 193 36.8
TAR362G0565 Trochodendron aralioides HOM05D004244 ORTHO05D004964 1.1e-15 88.2 198 36.4
Glyma.10G132400 Glycine max HOM05D004244 ORTHO05D004964 1.4e-15 87.8 181 37.6
Lj6g0017438 Lotus japonicus HOM05D004244 ORTHO05D004964 1.4e-15 87.8 187 38.0
FAN17G1122 Fragaria x ananassa HOM05D004244 ORTHO05D004964 1.8e-15 87.4 193 36.8
Hma1.2p1_0112F.1_g054970 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 2.3e-15 87.0 175 37.7
QL06p021978 Quercus lobata HOM05D004244 ORTHO05D004964 2.3e-15 87.0 189 37.0
Actinidia38930 Actinidia chinensis HOM05D004244 ORTHO05D004964 3.1e-15 86.7 238 33.2
CiPaw.01G175300 Carya illinoinensis HOM05D004244 ORTHO05D004964 5.2e-15 85.9 188 37.2
Cc09_g03010 Coffea canephora HOM05D004244 ORTHO05D004964 1.2e-14 84.7 190 33.2
Duzib052G0780 Durio zibethinus HOM05D004244 ORTHO05D004964 1.2e-14 84.7 191 34.0
Oeu010184.1 Olea europaea HOM05D004244 ORTHO05D004964 1.5e-14 84.3 183 35.5
Duzib052G0270 Durio zibethinus HOM05D004244 ORTHO05D004964 2.6e-14 83.6 191 34.0
COL.COLO4_15535 Corchorus olitorius HOM05D004244 ORTHO05D004964 3.4e-14 83.2 238 33.2
arahy.Tifrunner.gnm1.ann1.QYR710 Arachis hypogaea HOM05D004244 ORTHO05D004964 4.4e-14 82.8 192 35.9
CDE11G0045 Ceratophyllum demersum HOM05D004244 ORTHO05D004964 5.8e-14 82.4 225 29.8
Lsat_1_v5_gn_2_42020 Lactuca sativa HOM05D004244 ORTHO05D004964 5.8e-14 82.4 185 34.1
Peaxi162Scf00125g01118 Petunia axillaris HOM05D004244 ORTHO05D004964 5.8e-14 82.4 293 30.4
Thecc.04G269100 Theobroma cacao HOM05D004244 ORTHO05D004964 5.8e-14 82.4 198 34.3
arahy.Tifrunner.gnm1.ann1.9VYP7U Arachis hypogaea HOM05D004244 ORTHO05D004964 7.6e-14 82.0 192 35.9
Nn1g03029 Nelumbo nucifera HOM05D004244 ORTHO05D004964 9.9e-14 81.6 238 32.4
Lj2C46G4 Lonicera japonica HOM05D004244 ORTHO05D004964 2.2e-13 80.5 174 38.5
Lalb_Chr03g0036891 Lupinus albus HOM05D004244 ORTHO05D004964 2.2e-13 80.5 186 36.6
TPR.G23981 Trifolium pratense HOM05D004244 ORTHO05D004964 2.2e-13 80.5 174 35.6
TWI09G1213 Tripterygium wilfordii HOM05D004244 ORTHO05D004964 2.2e-13 80.5 187 36.4
MSTRG.24646 Avicennia marina HOM05D004244 ORTHO05D004964 2.9e-13 80.1 190 32.6
Peaxi162Scf00077g00117 Petunia axillaris HOM05D004244 ORTHO05D004964 2.9e-13 80.1 181 36.5
VMungo0720G2410 Vigna mungo HOM05D004244 ORTHO05D004964 2.9e-13 80.1 171 35.1
Dinv27132 Davidia involucrata HOM05D004244 ORTHO05D004964 3.7e-13 79.7 191 35.6
Actinidia11381 Actinidia chinensis HOM05D004244 ORTHO05D004964 4.9e-13 79.3 192 33.9
ClCG06G007490 Citrullus lanatus HOM05D004244 ORTHO05D004964 4.9e-13 79.3 184 35.9
Medtr1g045520 Medicago truncatula HOM05D004244 ORTHO05D004964 4.9e-13 79.3 188 34.6
PSO674G0105 Papaver somniferum HOM05D004244 ORTHO05D004964 6.4e-13 79.0 250 37.2
EL10Ac4g09763 Beta vulgaris HOM05D004244 ORTHO05D004964 1.1e-12 78.2 199 34.2
Gohir.D09G232300 Gossypium hirsutum HOM05D004244 ORTHO05D004964 1.9e-12 77.4 190 34.7
Gorai.006G255200 Gossypium raimondii HOM05D004244 ORTHO05D004964 1.9e-12 77.4 190 34.2
Sopen04g021060 Solanum pennellii HOM05D004244 ORTHO05D004964 1.9e-12 77.4 180 35.6
SalBow1G0411 Salvia bowleyana HOM05D004244 ORTHO05D004964 3.2e-12 76.6 180 30.0
Potri.010G063300 Populus trichocarpa HOM05D004244 ORTHO05D004964 7.1e-12 75.5 187 32.6
Sc09g0001820 Simmondsia chinensis HOM05D004244 ORTHO05D004964 7.1e-12 75.5 249 35.7
Gohir.A09G231200 Gossypium hirsutum HOM05D004244 ORTHO05D004964 2.1e-11 73.9 190 34.2
Rhsim02G0048800 Rhododendron simsii HOM05D004244 ORTHO05D004964 2.1e-11 73.9 172 35.5
CAN.G4.41 Capsicum annuum HOM05D004244 ORTHO05D004964 4.6e-11 72.8 174 33.3
Phvul.007G227000 Phaseolus vulgaris HOM05D004244 ORTHO05D004964 4.6e-11 72.8 183 31.7
PSO170G0851 Papaver somniferum HOM05D004244 ORTHO05D004964 6.0e-11 72.4 244 37.7
SalBow3G0496 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.0e-11 72.4 187 34.2
SalBow3G1459 Salvia bowleyana HOM05D004244 ORTHO05D004964 6.0e-11 72.4 187 34.2
ATR0723G041 Amborella trichopoda HOM05D004244 ORTHO05D004964 7.8e-11 72.0 174 33.9
CANSAT78G2336 Cannabis sativa HOM05D004244 ORTHO05D004964 7.8e-11 72.0 278 28.1
PGSC0003DMG402028717 Solanum tuberosum HOM05D004244 ORTHO05D004964 7.8e-11 72.0 167 35.9
Hma1.2p1_0130F.1_g060490 Hydrangea macrophylla HOM05D004244 ORTHO05D004964 3.9e-10 69.7 247 30.4
Sc19g0005660 Simmondsia chinensis HOM05D004244 ORTHO05D004964 3.9e-10 69.7 192 32.3
Hund07175 Selenicereus undatus HOM05D004244 ORTHO05D004964 5.1e-10 69.3 260 34.6
EL10Ac3g06716 Beta vulgaris HOM05D004244 ORTHO05D004964 8.6e-10 68.6 252 32.1
Sopen09g033990 Solanum pennellii HOM05D004244 ORTHO05D004964 1.1e-09 68.2 189 30.7
CSS0047223 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 1.9e-09 67.4 150 34.7
Sabra10G0043500 Salix brachista HOM05D004244 ORTHO05D004964 1.9e-09 67.4 177 31.1
Solyc09g091010.3 Solanum lycopersicum HOM05D004244 ORTHO05D004964 1.9e-09 67.4 189 30.2
Migut.F02055 Erythranthe guttata HOM05D004244 ORTHO05D004964 2.5e-09 67.0 181 31.5
Nitab4.5_0000451g0020 Nicotiana tabacum HOM05D004244 ORTHO05D004964 3.3e-09 66.6 199 31.7
PGSC0003DMG402001493 Solanum tuberosum HOM05D004244 ORTHO05D004964 4.3e-09 66.2 194 31.4
Cc03_g06840 Coffea canephora HOM05D004244 ORTHO05D004964 5.6e-09 65.9 184 33.2
Psat1g024120 Pisum sativum HOM05D004244 ORTHO05D004964 5.6e-09 65.9 177 32.2
DCAR_030773 Daucus carota HOM05D004244 ORTHO05D004964 7.3e-09 65.5 146 35.6
vmacro10383 Vaccinium macrocarpon HOM05D004244 ORTHO05D004964 9.6e-09 65.1 88 47.7
AUR62000633 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.1e-08 63.9 178 33.1
AUR62006986 Chenopodium quinoa HOM05D004244 ORTHO05D004964 2.8e-08 63.5 172 33.1
Cpa.g.sc59.37 Carica papaya HOM05D004244 ORTHO05D004964 3.6e-08 63.2 183 31.1
CSS0047414 Camellia sinensis var. sinensis HOM05D004244 ORTHO05D004964 4.7e-08 62.8 150 32.7
MSTRG.9217 Avicennia marina HOM05D004244 ORTHO05D004964 6.2e-08 62.4 178 29.8
Nitab4.5_0000867g0080 Nicotiana tabacum HOM05D004244 ORTHO05D004964 8.1e-08 62.0 198 30.3
Oeu008815.1 Olea europaea HOM05D004244 ORTHO05D004964 8.1e-08 62.0 148 32.4
Thhalv10017015m.g Eutrema salsugineum HOM05D004244 ORTHO05D004964 1.1e-07 61.6 190 30.5
HPP92_025817 Vanilla planifolia HOM05D004244 ORTHO05D004964 1.1e-07 61.6 240 30.4
Eucgr.H02883 Eucalyptus grandis HOM05D004244 ORTHO05D004964 2.4e-07 60.5 188 31.9
PGR004G0368 Punica granatum HOM05D004244 ORTHO05D004964 4.0e-07 59.7 194 28.4
Solyc04g050270.1 Solanum lycopersicum HOM05D004244 ORTHO05D004964 5.2e-07 59.3 161 34.2
Atru.chr4.1873 Acer truncatum HOM05D004244 ORTHO05D004964 6.8e-07 58.9 179 34.6
Aa31LG5G4140 Aethionema arabicum HOM05D004244 ORTHO05D004964 4.4e-06 56.2 185 29.7
SGA_v2.0_scaffold329G48831 Striga asiatica HOM05D004244 ORTHO05D004964 5.8e-06 55.8 167 28.7
Sp4g15550 Schrenkiella parvula HOM05D004244 ORTHO05D004964 9.9e-06 55.1 189 27.0


User provided reference genes

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