Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1436.4 724 100.0
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1436.4 724 100.0
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 0.0e+00 1339.3 724 93.6
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1330.9 725 92.8
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 0.0e+00 1329.3 731 93.0
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1316.6 724 91.3
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 0.0e+00 1266.1 724 88.4
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1253.0 725 88.1
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 0.0e+00 1251.1 729 87.8
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1250.0 725 88.1
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 0.0e+00 1237.6 725 87.6
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 0.0e+00 1234.9 726 86.4
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 0.0e+00 1231.5 725 87.0
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 0.0e+00 1218.4 724 85.2
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 0.0e+00 1210.3 724 84.8
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 0.0e+00 1208.4 724 84.8
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1193.7 728 85.4
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 0.0e+00 1156.4 745 80.1
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 0.0e+00 1135.9 722 82.4
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 2.5e-311 1071.6 730 74.5
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 1.8e-272 942.6 543 86.7
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.2e-268 929.9 747 64.5
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 2.5e-266 922.2 747 64.8
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 3.3e-266 921.8 747 64.7
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 8.2e-265 917.1 748 63.9
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 3.1e-264 915.2 744 63.0
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 4.2e-261 904.8 748 62.6
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 3.6e-260 901.7 746 63.1
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 1.8e-259 899.4 750 62.5
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 3.9e-259 898.3 746 61.9
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 2.8e-257 892.1 752 62.2
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 4.5e-255 884.8 743 62.0
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 5.9e-255 884.4 742 62.0
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 6.5e-254 880.9 748 60.8
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 6.5e-254 880.9 760 60.8
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.3e-251 872.5 744 61.6
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 1.5e-250 869.8 747 60.8
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 2.0e-250 869.4 745 60.9
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 1.7e-249 866.3 740 61.6
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 8.2e-249 864.0 660 66.5
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 8.2e-249 864.0 736 60.6
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 1.8e-248 862.8 748 60.2
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 2.4e-248 862.4 740 61.2
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 5.3e-248 861.3 745 59.7
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 7.0e-248 860.9 740 60.3
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 2.0e-247 859.4 743 60.3
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.0e-246 857.1 748 60.4
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 1.1e-245 853.6 747 58.8
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 9.4e-245 850.5 765 59.5
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 2.1e-244 849.4 748 59.1
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 8.0e-244 847.4 721 60.6
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.0e-243 847.0 739 58.9
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 3.3e-242 842.0 742 60.0
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 2.2e-241 839.3 745 60.4
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 1.1e-240 837.0 742 58.2
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 1.1e-240 837.0 744 58.1
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.8e-240 836.3 746 59.5
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.8e-240 836.3 747 58.6
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 5.3e-240 834.7 778 56.3
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 7.0e-240 834.3 747 60.2
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 9.1e-240 833.9 750 58.0
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.2e-239 833.6 749 59.1
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 8.5e-238 827.4 748 58.2
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 1.5e-237 826.6 745 57.7
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 1.9e-237 826.2 612 68.1
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 3.2e-237 825.5 729 59.5
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 4.7e-236 821.6 748 57.6
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 6.1e-236 821.2 755 58.0
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 5.2e-235 818.1 835 55.0
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.2e-234 817.0 746 57.0
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 1.5e-234 816.6 735 58.1
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.4e-234 815.1 733 58.5
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 5.7e-234 814.7 780 55.8
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 5.7e-234 814.7 750 57.2
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 3.1e-232 808.9 780 55.6
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 5.9e-231 804.7 761 56.8
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.0e-230 803.9 783 55.3
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 4.2e-229 798.5 772 56.6
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 4.7e-228 795.0 678 61.4
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 3.4e-226 788.9 673 62.4
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 5.7e-226 788.1 768 55.7
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 5.4e-224 781.6 746 56.2
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 7.0e-224 781.2 758 55.9
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 2.7e-223 779.2 740 57.0
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 2.3e-222 776.2 802 53.2
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 7.2e-221 771.2 670 61.2
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.0e-219 767.3 671 60.1
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 1.4e-219 766.9 825 52.2
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.0e-218 763.1 663 60.5
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 6.1e-212 741.5 741 54.3
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.0e-211 740.7 693 57.3
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 3.3e-205 719.2 673 56.3
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.6e-202 709.5 659 56.8
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 3.4e-202 709.1 764 51.7
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 7.5e-202 708.0 753 52.1
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 1.1e-200 704.1 811 49.7
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 5.4e-200 701.8 743 52.5
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.7e-198 696.8 655 55.4
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 3.9e-198 695.7 568 64.8
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.0e-190 669.5 739 50.3
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 3.9e-190 669.1 746 50.5
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 1.5e-186 657.1 745 51.3
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 3.4e-186 656.0 730 50.1
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 4.0e-179 632.5 617 55.4
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 2.4e-176 623.2 617 54.9
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 7.3e-173 611.7 756 47.8
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 4.9e-169 599.0 797 46.8
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 1.1e-168 597.8 577 54.9
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 1.5e-162 577.4 630 51.6
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 7.1e-160 568.5 738 46.6
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 1.3e-156 557.8 931 39.8
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 2.1e-156 557.0 610 51.1
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 2.8e-156 556.6 613 50.1
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 8.7e-150 535.0 541 53.4
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 3.7e-140 503.1 649 47.6
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 3.1e-131 473.4 393 61.3
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 1.3e-129 468.0 536 48.9
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 2.2e-108 397.5 393 52.4
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 6.4e-92 342.8 657 35.3
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.9e-88 331.3 368 50.8
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 3.6e-79 300.4 697 30.7
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 4.9e-76 290.0 631 34.1
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 9.3e-59 232.6 372 37.9
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.5e-53 215.3 228 49.1
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.5e-53 215.3 228 49.1
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 6.0e-50 203.4 577 30.7
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 1.5e-48 198.7 187 59.9
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 6.0e-42 176.8 102 89.2
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 1.6e-39 168.7 150 58.7
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 5.3e-38 163.7 162 50.6
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 2.3e-33 148.3 77 89.6
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 3.9e-33 147.5 77 88.3
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 6.3e-31 140.2 77 84.4
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 5.3e-30 137.1 186 41.9
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 7.4e-24 116.7 56 100.0
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 1.2e-18 99.4 191 42.4
C05p29450 Brassica napus HOM05D005077 ORTHO05D018175 4.7e-18 97.4 67 82.1
BolC5t31675H Brassica oleracea HOM05D005077 ORTHO05D018175 4.7e-18 97.4 67 82.1
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 3.0e-17 94.7 192 35.4
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 9.7e-16 89.7 62 66.1
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 4.8e-15 87.4 102 44.1
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 1.4e-14 85.9 50 76.0
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.2e-10 72.8 94 46.8
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.0e-09 68.2 79 48.1
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.3e-08 64.7 56 57.1


User provided reference genes

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