Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 3.0e-190 668.3 329 100.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-188 662.9 329 99.1
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 8.2e-188 660.2 329 98.5
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 1.3e-180 636.3 332 95.8
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 1.7e-180 636.0 332 95.8
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 4.8e-172 607.8 328 92.1
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 4.8e-172 607.8 328 92.1
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 2.0e-170 602.4 332 90.4
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 3.8e-169 598.2 335 89.6
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 1.2e-167 593.2 340 87.1
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.1e-167 592.4 320 92.5
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 5.7e-165 584.3 335 88.4
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 1.3e-164 583.2 335 86.9
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 5.9e-162 574.3 321 87.5
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.5e-161 570.5 334 85.0
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 5.5e-160 567.8 330 86.7
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-154 549.3 324 82.1
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 1.3e-153 546.6 324 81.8
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 1.3e-153 546.6 324 81.8
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 1.7e-153 546.2 328 81.4
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 6.5e-153 544.3 329 81.2
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 1.5e-149 533.1 323 81.1
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 4.1e-147 525.0 337 77.4
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.0e-147 524.2 320 79.1
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 7.8e-146 520.8 307 81.8
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 2.3e-145 519.2 324 79.3
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 7.3e-144 514.2 334 75.7
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 2.1e-143 512.7 331 75.8
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.8e-142 509.6 334 75.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 4.0e-142 508.4 333 76.0
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 5.2e-142 508.1 324 77.5
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 5.7e-141 504.6 324 76.2
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 7.5e-141 504.2 325 76.0
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 9.8e-141 503.8 343 72.0
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 4.9e-140 501.5 343 71.7
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.1e-139 500.4 334 73.1
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.4e-139 500.0 333 74.5
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 1.8e-139 499.6 337 73.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 4.1e-139 498.4 331 73.1
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.6e-138 496.5 332 75.3
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.0e-138 496.1 331 74.0
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 4.6e-138 495.0 334 73.7
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 1.7e-137 493.0 328 73.8
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 1.5e-136 490.0 332 72.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 1.9e-136 489.6 321 74.1
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.3e-136 487.6 341 71.6
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 7.3e-136 487.6 326 75.2
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 1.2e-135 486.9 330 72.1
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.6e-135 486.5 351 70.1
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 2.1e-135 486.1 332 71.4
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 2.1e-135 486.1 315 76.2
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.6e-135 485.3 340 70.6
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 4.7e-135 485.0 328 72.6
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 4.7e-135 485.0 330 70.9
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 6.2e-135 484.6 266 83.5
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.1e-134 483.8 263 84.4
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 2.3e-134 482.6 321 74.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 5.2e-134 481.5 331 71.9
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-134 481.5 323 71.8
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 5.2e-134 481.5 323 71.8
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 6.8e-134 481.1 266 82.0
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.9e-134 480.7 327 71.9
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 1.2e-133 480.3 338 70.7
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.5e-133 479.9 326 71.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 2.0e-133 479.6 324 70.7
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 2.0e-133 479.6 328 73.8
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 2.6e-133 479.2 329 69.9
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 9.8e-133 477.2 343 69.7
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.3e-132 476.9 329 70.8
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 1.7e-132 476.5 335 71.9
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 1.7e-132 476.5 334 71.6
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.2e-132 476.1 292 77.1
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.2e-132 476.1 324 71.6
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.7e-132 475.3 334 71.6
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 1.9e-131 473.0 263 82.9
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.4e-131 472.6 292 76.7
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.2e-131 472.2 263 82.9
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 4.1e-131 471.9 263 82.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.1e-131 471.9 300 74.0
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 5.4e-131 471.5 329 70.2
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 7.0e-131 471.1 331 70.4
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 9.2e-131 470.7 322 73.3
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 2.0e-130 469.5 329 70.5
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 2.0e-130 469.5 298 74.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.5e-130 468.8 327 70.0
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 6.0e-130 468.0 343 67.9
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 7.8e-130 467.6 261 80.1
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.0e-129 467.2 326 72.1
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.7e-129 466.5 274 79.9
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 3.0e-129 465.7 327 69.1
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 3.9e-129 465.3 332 69.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.6e-129 464.5 266 81.2
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 6.6e-129 464.5 261 80.1
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 6.6e-129 464.5 261 82.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 8.6e-129 464.2 314 73.2
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.1e-128 463.8 327 69.4
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 1.1e-128 463.8 307 73.0
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.9e-128 463.0 282 75.9
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 3.3e-128 462.2 321 69.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 5.6e-128 461.5 348 66.1
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 7.3e-128 461.1 325 70.2
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 9.5e-128 460.7 318 71.1
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 8.1e-127 457.6 286 76.2
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 8.1e-127 457.6 263 81.4
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.1e-126 457.2 325 69.5
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.1e-126 455.7 286 76.2
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 2.0e-125 453.0 321 69.5
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 7.5e-125 451.1 272 78.3
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.9e-124 448.4 259 79.5
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 1.4e-123 446.8 287 74.9
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.4e-123 446.8 325 68.9
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.9e-123 446.4 325 68.9
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 9.2e-123 444.1 240 85.8
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 3.5e-122 442.2 328 67.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.1e-120 437.2 332 66.3
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 6.2e-119 431.4 240 82.5
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.8e-118 429.9 233 84.5
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 3.8e-116 422.2 261 75.9
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 1.2e-114 417.2 268 72.0
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.5e-112 410.2 232 83.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 1.9e-112 409.8 216 85.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.5e-112 409.5 219 84.9
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 7.3e-112 407.9 217 84.3
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.2e-111 407.1 217 83.4
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.6e-111 406.8 340 60.9
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 2.1e-111 406.4 217 82.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 2.2e-108 396.4 217 83.4
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 9.3e-107 391.0 320 61.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.6e-106 390.2 324 61.1
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 3.0e-105 386.0 208 85.1
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 2.1e-103 379.8 265 66.8
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.5e-101 373.6 313 60.4
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 4.6e-98 362.1 219 73.5
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.5e-96 357.1 216 86.1
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 3.3e-96 355.9 290 63.8
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 2.4e-94 349.7 318 56.0
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.2e-84 316.6 208 77.9
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 8.4e-84 314.7 233 62.2
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 1.1e-83 314.3 219 73.5
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 4.2e-83 312.4 234 69.2
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 4.1e-78 295.8 154 86.4
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 7.6e-77 291.6 159 83.6
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 5.1e-73 278.9 237 62.0
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 4.7e-66 255.8 165 80.6
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 8.8e-65 251.5 213 62.9
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 8.8e-65 251.5 212 61.3
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 2.6e-56 223.4 126 80.2
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.3e-52 211.1 147 67.3
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 2.7e-29 133.7 112 68.8
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 6.8e-17 92.4 49 83.7
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 3.4e-16 90.1 84 56.0
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 5.4e-14 82.8 108 49.1
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 3.5e-13 80.1 102 48.0


User provided reference genes

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