Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04283 Brassica carinata HOM05D010897 ORTHO05D010396 2.8e-51 204.9 99 100.0
C03p42870 Brassica napus HOM05D010897 ORTHO05D010396 2.8e-51 204.9 99 100.0
BolC3t16555H Brassica oleracea HOM05D010897 ORTHO05D010396 2.8e-51 204.9 99 100.0
BraA03t12703Z Brassica rapa HOM05D010897 ORTHO05D010396 8.2e-51 203.4 99 99.0
A03p35250 Brassica napus HOM05D010897 ORTHO05D010396 3.1e-50 201.4 99 99.0
BraA05t22807Z Brassica rapa HOM05D010897 ORTHO05D010396 2.7e-49 198.4 99 93.9
C05p59870 Brassica napus HOM05D010897 ORTHO05D010396 3.5e-49 198.0 99 93.9
BolC5t34641H Brassica oleracea HOM05D010897 ORTHO05D010396 3.5e-49 198.0 99 93.9
A05p40760 Brassica napus HOM05D010897 ORTHO05D010396 5.9e-49 197.2 99 92.9
BcaB03g14702 Brassica carinata HOM05D010897 ORTHO05D010396 1.3e-48 196.1 99 92.9
Sp3g06350 Schrenkiella parvula HOM05D010897 ORTHO05D010396 1.5e-47 192.6 99 91.9
Thhalv10021826m.g Eutrema salsugineum HOM05D010897 ORTHO05D010396 5.5e-47 190.7 99 88.9
CARHR082070 Cardamine hirsuta HOM05D010897 ORTHO05D010396 5.2e-45 184.1 99 89.9
BcaC05g29535 Brassica carinata HOM05D010897 ORTHO05D010396 6.8e-45 183.7 99 87.9
AT3G07425 Arabidopsis thaliana HOM05D010897 ORTHO05D010396 8.8e-45 183.3 99 85.9
Carub.0003s0697 Capsella rubella HOM05D010897 ORTHO05D010396 2.0e-44 182.2 99 85.9
AL3G18730 Arabidopsis lyrata HOM05D010897 ORTHO05D010396 9.8e-44 179.9 99 85.9
Aa31LG5G18000 Aethionema arabicum HOM05D010897 ORTHO05D010396 4.7e-30 134.4 100 67.0
THA.LOC104822469 Tarenaya hassleriana HOM05D010897 ORTHO05D010396 2.3e-24 115.5 104 59.6
Manes.12G052800 Manihot esculenta HOM05D008716 ORTHO05D010396 1.5e-12 76.3 97 46.4
SalBow3G3739 Salvia bowleyana HOM05D008716 ORTHO05D010396 4.4e-12 74.7 103 45.6
Glyma.08G344900 Glycine max HOM05D008716 ORTHO05D010396 2.9e-11 72.0 105 45.7
Lj1g0004683 Lotus japonicus HOM05D008716 ORTHO05D010396 4.9e-11 71.2 100 46.0
Hma1.2p1_0161F.1_g071310 Hydrangea macrophylla HOM05D008716 ORTHO05D010396 1.1e-10 70.1 84 44.0
Phvul.008G137500 Phaseolus vulgaris HOM05D008716 ORTHO05D010396 1.9e-10 69.3 105 43.8
CANSAT01G0992 Cannabis sativa HOM05D008716 ORTHO05D010396 2.4e-10 68.9 105 45.7
Ca_07396_v3 Cicer arietinum L. HOM05D008716 ORTHO05D010396 4.1e-10 68.2 92 42.4
Psat3g151280 Pisum sativum HOM05D008716 ORTHO05D010396 4.1e-10 68.2 92 45.7
Potri.002G250100 Populus trichocarpa HOM05D008716 ORTHO05D010396 4.1e-10 68.2 105 41.0
Eucgr.K02092 Eucalyptus grandis HOM05D008716 ORTHO05D010396 5.4e-10 67.8 98 40.8
FAN15G3441 Fragaria x ananassa HOM05D002214 ORTHO05D007367 5.4e-10 67.8 82 45.1
TPR.G26813 Trifolium pratense HOM05D008716 ORTHO05D010396 7.1e-10 67.4 104 41.3
Medtr7g052240 Medicago truncatula HOM05D008716 ORTHO05D010396 9.2e-10 67.0 105 40.0
RcHm_v2.0_Chr6g0283141 Rosa chinensis HOM05D008716 ORTHO05D010396 1.6e-09 66.2 104 39.4
Migut.D00724 Erythranthe guttata HOM05D008716 ORTHO05D010396 2.1e-09 65.9 82 42.7
Cc01_g16240 Coffea canephora HOM05D008716 ORTHO05D010396 2.7e-09 65.5 79 44.3
Nitab4.5_0000038g0060 Nicotiana tabacum HOM05D008716 ORTHO05D010396 7.8e-09 63.9 105 38.1
Migut.N00660 Erythranthe guttata HOM05D008716 ORTHO05D010396 1.0e-08 63.5 73 45.2
Gohir.A11G142000 Gossypium hirsutum HOM05D008716 ORTHO05D010396 1.0e-08 63.5 107 43.0
Gohir.D11G148300 Gossypium hirsutum HOM05D008716 ORTHO05D010396 2.3e-08 62.4 107 42.1
Gorai.007G159000 Gossypium raimondii HOM05D008716 ORTHO05D010396 2.3e-08 62.4 107 42.1
VMungo1383G3111 Vigna mungo HOM05D008716 ORTHO05D010396 2.3e-08 62.4 78 48.7
Thecc.01G212000 Theobroma cacao HOM05D008716 ORTHO05D010396 3.0e-08 62.0 86 47.7
Prupe.8G191500 Prunus persica HOM05D008716 ORTHO05D010396 4.3e-07 58.2 103 35.9
CiPaw.13G054500 Carya illinoinensis HOM05D008716 ORTHO05D010396 5.6e-07 57.8 87 48.3
Lsat_1_v5_gn_9_16200 Lactuca sativa HOM05D008716 ORTHO05D010396 7.3e-07 57.4 104 36.5
Gohir.D07G095100 Gossypium hirsutum HOM05D008716 ORTHO05D010396 9.5e-07 57.0 79 43.0
Sed0019156 Sechium edule HOM05D008716 ORTHO05D010396 2.1e-06 55.8 102 36.3
Duzib133G0923 Durio zibethinus HOM05D008716 ORTHO05D010396 3.6e-06 55.1 86 46.5
Lalb_Chr01g0022011 Lupinus albus HOM05D008716 ORTHO05D010396 3.6e-06 55.1 80 43.8
QL09p045905 Quercus lobata HOM05D008716 ORTHO05D010396 3.6e-06 55.1 84 42.9
Lsat_1_v5_gn_5_178421 Lactuca sativa HOM05D008716 ORTHO05D010396 8.1e-06 53.9 106 36.8


User provided reference genes

Program Settings