Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 3.5e-132 474.9 239 100.0
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 3.5e-132 474.9 239 100.0
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 1.4e-128 463.0 239 97.1
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 1.3e-121 439.9 242 92.6
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 1.3e-121 439.9 242 92.6
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 2.7e-116 422.2 242 88.4
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 1.1e-112 410.2 242 85.1
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 1.3e-110 403.3 241 83.8
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 7.9e-108 394.0 242 81.8
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 2.0e-106 389.4 244 80.7
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 2.0e-106 389.4 242 81.0
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 1.1e-104 383.6 242 79.8
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 7.7e-95 350.9 265 69.1
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 3.3e-85 318.9 244 66.8
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 3.4e-82 308.9 195 81.5
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 3.6e-68 262.3 246 59.3
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 4.0e-67 258.8 243 53.1
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.2e-66 257.3 242 52.1
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 2.7e-63 246.1 243 52.7
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 2.3e-62 243.0 243 52.7
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.9e-62 242.3 244 51.6
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 8.6e-62 241.1 244 52.0
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.5e-61 240.4 242 51.2
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 3.3e-61 239.2 245 53.5
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 4.3e-61 238.8 243 47.3
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 1.4e-59 233.8 243 49.4
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 2.0e-58 229.9 244 48.4
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 2.6e-58 229.6 243 48.1
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 3.4e-58 229.2 244 49.6
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 8.3e-57 224.6 242 50.0
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 3.2e-56 222.6 243 47.3
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 3.2e-56 222.6 243 52.3
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 9.2e-56 221.1 244 46.3
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 2.7e-55 219.5 243 44.9
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 2.7e-55 219.5 243 47.3
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 4.6e-55 218.8 243 46.9
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 5.1e-54 215.3 243 44.9
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 6.6e-54 214.9 243 47.3
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.1e-53 214.2 243 47.3
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 3.3e-53 212.6 244 44.3
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 4.3e-53 212.2 243 46.9
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.3e-53 212.2 243 45.7
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 9.5e-53 211.1 243 44.0
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 1.6e-52 210.3 244 45.5
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 2.1e-52 209.9 243 46.9
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 2.1e-52 209.9 243 42.8
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 8.1e-52 208.0 243 45.7
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 1.4e-51 207.2 243 42.4
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 3.1e-51 206.1 243 44.4
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 5.2e-51 205.3 247 41.3
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 6.8e-51 204.9 247 41.3
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 6.8e-51 204.9 244 43.0
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 8.9e-51 204.5 243 44.0
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 1.2e-50 204.1 243 44.4
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 1.7e-49 200.3 243 43.6
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 4.1e-48 195.7 242 43.4
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 5.4e-48 195.3 246 42.7
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 7.1e-48 194.9 242 43.0
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.7e-47 193.0 235 44.7
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 7.8e-47 191.4 243 41.6
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 7.8e-47 191.4 243 43.6
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 3.9e-46 189.1 243 42.0
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 8.7e-46 188.0 231 42.4
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 1.1e-45 187.6 243 42.4
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 1.5e-45 187.2 245 40.8
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 2.5e-45 186.4 243 42.4
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 2.5e-45 186.4 245 44.1
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 2.5e-45 186.4 202 49.5
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 2.8e-44 183.0 188 54.3
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 2.4e-43 179.9 248 43.5
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 2.0e-42 176.8 247 42.5
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 4.4e-42 175.6 243 40.3
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 7.6e-42 174.9 247 42.1
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 1.3e-41 174.1 243 42.0
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 1.7e-41 173.7 221 43.0
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.7e-41 173.7 205 45.4
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 8.4e-41 171.4 243 39.9
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 8.4e-41 171.4 292 33.6
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 8.4e-41 171.4 174 51.1
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 1.1e-40 171.0 253 41.1
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.1e-40 171.0 247 40.9
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 7.1e-40 168.3 242 38.8
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 1.2e-39 167.5 243 37.0
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 1.6e-39 167.2 244 40.2
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 6.0e-39 165.2 201 42.3
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 3.0e-38 162.9 169 50.9
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 9.3e-32 141.4 251 36.3
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 2.7e-31 139.8 175 42.9
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 5.1e-30 135.6 173 44.5
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 8.7e-30 134.8 241 32.4
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 1.5e-29 134.0 243 32.1
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 9.6e-29 131.3 243 33.7
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 3.1e-27 126.3 166 38.6
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 9.9e-26 121.3 203 36.5
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.3e-25 120.9 237 29.5
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 5.5e-24 115.5 247 30.4
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 1.6e-20 104.0 160 37.5
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 1.1e-13 81.3 95 44.2
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 1.2e-07 61.2 72 38.9
MBI14_g37361_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 2.3e-06 57.0 44 54.5


User provided reference genes

Program Settings