Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04265 Brassica carinata HOM05D003920 ORTHO05D004877 2.2e-160 568.9 285 100.0
C03p43290 Brassica napus HOM05D003920 ORTHO05D004877 1.0e-157 560.1 282 99.6
BolC3t16599H Brassica oleracea HOM05D003920 ORTHO05D004877 1.3e-157 559.7 281 99.6
A03p35650 Brassica napus HOM05D003920 ORTHO05D004877 5.7e-153 544.3 286 97.6
BraA03t12740Z Brassica rapa HOM05D003920 ORTHO05D004877 9.7e-153 543.5 285 97.5
BcaB03g11569 Brassica carinata HOM05D003920 ORTHO05D004877 8.5e-149 530.4 286 93.0
Sp3g06990 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.6e-139 498.4 324 80.6
AT3G08505 Arabidopsis thaliana HOM05D003920 ORTHO05D004877 1.7e-133 479.6 312 79.5
BcaC09g47976 Brassica carinata HOM05D003920 ORTHO05D004877 2.9e-133 478.8 301 80.7
Thhalv10021103m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 1.1e-132 476.9 323 77.4
BcaB04g21254 Brassica carinata HOM05D003920 ORTHO05D004877 1.9e-132 476.1 311 80.4
BraA01t04343Z Brassica rapa HOM05D003920 ORTHO05D004877 3.2e-132 475.3 301 80.7
AL3G19480 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 1.6e-131 473.0 311 79.4
CARHR082810 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.7e-131 472.2 306 79.1
Carub.0003s0765 Capsella rubella HOM05D003920 ORTHO05D004877 1.4e-127 459.9 319 75.5
THA.LOC104827426 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.2e-113 413.7 336 67.3
THA.LOC104819067 Tarenaya hassleriana HOM05D003920 ORTHO05D004877 1.3e-112 410.2 346 64.5
BraA08t33064Z Brassica rapa HOM05D003920 ORTHO05D004877 1.2e-110 403.7 317 65.9
BcaC07g37767 Brassica carinata HOM05D003920 ORTHO05D004877 2.0e-110 402.9 316 66.5
A08p28590 Brassica napus HOM05D003920 ORTHO05D004877 1.5e-108 396.7 314 65.9
Aa31LG5G18640 Aethionema arabicum HOM05D003920 ORTHO05D004877 2.5e-108 396.0 204 87.7
CARHR291420 Cardamine hirsuta HOM05D003920 ORTHO05D004877 2.1e-107 392.9 331 63.7
Thhalv10010518m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 3.6e-107 392.1 328 64.0
Sp1g00020 Schrenkiella parvula HOM05D003920 ORTHO05D004877 3.6e-107 392.1 342 61.7
Gohir.A08G027700 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.8e-106 389.8 347 61.1
Gohir.D08G038400 Gossypium hirsutum HOM05D003920 ORTHO05D004877 5.2e-106 388.3 347 61.1
ECA248G0446 Erigeron canadensis HOM05D003920 ORTHO05D004877 8.9e-106 387.5 334 61.7
Gorai.004G036900 Gossypium raimondii HOM05D003920 ORTHO05D004877 2.6e-105 386.0 346 61.0
Dinv43454 Davidia involucrata HOM05D003920 ORTHO05D004877 4.4e-105 385.2 350 59.7
Psat5g204200 Pisum sativum HOM05D003920 ORTHO05D004877 7.5e-105 384.4 345 59.1
Eucgr.J01264 Eucalyptus grandis HOM05D003920 ORTHO05D004877 1.3e-104 383.6 350 60.6
TPR.G12140 Trifolium pratense HOM05D003920 ORTHO05D004877 1.3e-104 383.6 345 58.8
Nn2g15431 Nelumbo nucifera HOM05D003920 ORTHO05D004877 2.2e-104 382.9 341 60.7
Potri.001G268200 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.9e-104 382.5 348 59.2
MSTRG.5016 Avicennia marina HOM05D003920 ORTHO05D004877 3.7e-104 382.1 311 65.0
Medtr3g028190 Medicago truncatula HOM05D003920 ORTHO05D004877 3.7e-104 382.1 345 59.4
Ca_27172_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.4e-104 381.3 345 59.7
Sabra16G0164300 Salix brachista HOM05D003920 ORTHO05D004877 8.3e-104 380.9 348 58.6
Lj3g0003225 Lotus japonicus HOM05D003920 ORTHO05D004877 1.1e-103 380.6 347 59.7
Manes.10G144700 Manihot esculenta HOM05D003920 ORTHO05D004877 1.4e-103 380.2 349 60.2
Phvul.005G019900 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.4e-103 380.2 351 58.4
CDE04G0006 Ceratophyllum demersum HOM05D003920 ORTHO05D004877 1.9e-103 379.8 337 59.3
HanXRQChr01g0016141 Helianthus annuus HOM05D003920 ORTHO05D004877 1.9e-103 379.8 334 59.9
Nn7g36164 Nelumbo nucifera HOM05D003920 ORTHO05D004877 1.9e-103 379.8 341 60.4
Potri.009G062600 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.4e-103 379.4 348 58.3
Sabra09G0046300 Salix brachista HOM05D003920 ORTHO05D004877 3.2e-103 379.0 346 58.7
Prupe.2G011700 Prunus persica HOM05D003920 ORTHO05D004877 4.1e-103 378.6 355 56.9
arahy.Tifrunner.gnm1.ann1.LBVL0K Arachis hypogaea HOM05D003920 ORTHO05D004877 9.2e-103 377.5 342 60.2
DCAR_003208 Daucus carota HOM05D003920 ORTHO05D004877 2.0e-102 376.3 347 59.1
Rhsim07G0054700 Rhododendron simsii HOM05D003920 ORTHO05D004877 2.0e-102 376.3 345 59.1
MD02G1313900 Malus domestica HOM05D003920 ORTHO05D004877 2.7e-102 375.9 350 57.4
Glyma.15G272400 Glycine max HOM05D003920 ORTHO05D004877 3.5e-102 375.6 351 58.1
Lalb_Chr01g0015291 Lupinus albus HOM05D003920 ORTHO05D004877 3.5e-102 375.6 345 59.1
Aqoxy2G00138 Aquilegia oxysepala HOM05D003920 ORTHO05D004877 1.0e-101 374.0 347 57.6
MD07G1008500 Malus domestica HOM05D003920 ORTHO05D004877 1.7e-101 373.2 350 58.0
TWI73G0359 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 1.7e-101 373.2 369 55.8
COL.COLO4_23923 Corchorus olitorius HOM05D003920 ORTHO05D004877 2.3e-101 372.9 212 77.8
BolC8t48154H Brassica oleracea HOM05D003920 ORTHO05D004877 3.0e-101 372.5 294 66.0
VMungo1080G0709 Vigna mungo HOM05D003920 ORTHO05D004877 3.0e-101 372.5 351 57.8
A08p10660 Brassica napus HOM05D003920 ORTHO05D004877 3.9e-101 372.1 297 66.0
Glyma.08G153800 Glycine max HOM05D003920 ORTHO05D004877 3.9e-101 372.1 351 58.4
SEGI_34678 Sequoiadendron giganteum HOM05D003920 ORTHO05D004877 1.9e-100 369.8 312 62.8
Peaxi162Scf00428g00618 Petunia axillaris HOM05D003920 ORTHO05D004877 3.3e-100 369.0 348 56.6
arahy.Tifrunner.gnm1.ann1.Z50281 Arachis hypogaea HOM05D003920 ORTHO05D004877 1.2e-99 367.1 223 74.9
BolC8t49780H Brassica oleracea HOM05D003920 ORTHO05D004877 1.6e-99 366.7 292 65.8
Peaxi162Scf00407g00639 Petunia axillaris HOM05D003920 ORTHO05D004877 2.8e-99 365.9 348 54.6
Lj9C630T11 Lonicera japonica HOM05D003920 ORTHO05D004877 6.2e-99 364.8 222 73.0
Migut.N01471 Erythranthe guttata HOM05D003920 ORTHO05D004877 8.0e-99 364.4 333 59.2
DCAR_022405 Daucus carota HOM05D003920 ORTHO05D004877 1.1e-98 364.0 348 56.9
Thecc.01G412100 Theobroma cacao HOM05D003920 ORTHO05D004877 1.1e-98 364.0 328 60.1
EL10Ac2g04315 Beta vulgaris HOM05D003920 ORTHO05D004877 1.4e-98 363.6 328 59.1
PSO339G5616 Papaver somniferum HOM05D003920 ORTHO05D004877 1.4e-98 363.6 355 55.5
Sc10g0000010 Simmondsia chinensis HOM05D003920 ORTHO05D004877 1.4e-98 363.6 311 62.4
Sopen10g011530 Solanum pennellii HOM05D003920 ORTHO05D004877 1.8e-98 363.2 349 56.4
Carub.0005s3016 Capsella rubella HOM05D003920 ORTHO05D004877 2.3e-98 362.8 317 62.5
PSO384G3532 Papaver somniferum HOM05D003920 ORTHO05D004877 2.3e-98 362.8 355 55.5
SGA_v2.0_scaffold167G38446 Striga asiatica HOM05D003920 ORTHO05D004877 2.3e-98 362.8 322 59.6
Aa31LG10G17420 Aethionema arabicum HOM05D003920 ORTHO05D004877 3.1e-98 362.5 317 59.9
AL5G46410 Arabidopsis lyrata HOM05D003920 ORTHO05D004877 3.1e-98 362.5 320 61.2
CAN.G709.1 Capsicum annuum HOM05D003920 ORTHO05D004877 4.0e-98 362.1 338 58.6
QL04p007133 Quercus lobata HOM05D003920 ORTHO05D004877 4.0e-98 362.1 328 59.1
PGR044G2195 Punica granatum HOM05D003920 ORTHO05D004877 8.9e-98 360.9 352 54.8
Ciclev10031666m.g Citrus clementina HOM05D003920 ORTHO05D004877 1.2e-97 360.5 315 55.2
Zm00001eb381600 Zea mays HOM05D003920 ORTHO05D004877 1.2e-97 360.5 354 56.2
Nitab4.5_0000634g0100 Nicotiana tabacum HOM05D003920 ORTHO05D004877 2.0e-97 359.8 341 55.4
HPP92_005768 Vanilla planifolia HOM05D003920 ORTHO05D004877 2.0e-97 359.8 351 56.1
unitig_85.g27216 Utricularia gibba HOM05D003920 ORTHO05D004877 2.6e-97 359.4 326 53.7
vmacro13655 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 4.4e-97 358.6 288 59.7
MBI04_g13623_MAGBIO Magnolia biondii HOM05D003920 ORTHO05D004877 5.8e-97 358.2 350 56.3
ATR0605G260 Amborella trichopoda HOM05D003920 ORTHO05D004877 1.3e-96 357.1 335 57.0
Sed0011667 Sechium edule HOM05D003920 ORTHO05D004877 1.3e-96 357.1 347 55.3
AUR62009376 Chenopodium quinoa HOM05D003920 ORTHO05D004877 2.9e-96 355.9 335 57.0
FAN06G2354 Fragaria x ananassa HOM05D003920 ORTHO05D004877 3.7e-96 355.5 211 74.4
FvH4_7g00890 Fragaria vesca HOM05D003920 ORTHO05D004877 6.4e-96 354.8 211 73.9
TAR633G1074 Trochodendron aralioides HOM05D003920 ORTHO05D004877 8.3e-96 354.4 229 69.4
Atru.chr11.2647 Acer truncatum HOM05D003920 ORTHO05D004877 4.1e-95 352.1 320 58.4
TAR369G0176 Trochodendron aralioides HOM05D003920 ORTHO05D004877 4.1e-95 352.1 352 54.5
Gorai.004G173300 Gossypium raimondii HOM05D003920 ORTHO05D004877 5.4e-95 351.7 213 72.8
SalBow5G4770 Salvia bowleyana HOM05D003920 ORTHO05D004877 7.0e-95 351.3 329 56.5
Gohir.D08G166100 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.6e-94 350.1 213 72.8
Nitab4.5_0011837g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.6e-94 350.1 360 53.9
Sopen01g034110 Solanum pennellii HOM05D003920 ORTHO05D004877 3.5e-94 349.0 348 54.6
CSS0030964 Camellia sinensis var. sinensis HOM05D003920 ORTHO05D004877 4.6e-94 348.6 328 57.6
Haze_03212 Corylus avellana HOM05D003920 ORTHO05D004877 4.6e-94 348.6 322 59.0
Solyc01g087030.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 1.3e-93 347.1 348 54.6
CsaV3_7G031170 Cucumis sativus L. HOM05D003920 ORTHO05D004877 1.9e-92 343.2 323 57.3
Solyc10g038000.3 Solanum lycopersicum HOM05D003920 ORTHO05D004877 3.3e-92 342.4 212 71.7
MELO3C023541.2 Cucumis melo HOM05D003920 ORTHO05D004877 5.6e-92 341.7 323 57.6
Lsat_1_v5_gn_1_107981 Lactuca sativa HOM05D003920 ORTHO05D004877 5.6e-92 341.7 318 57.2
Cc02_g27790 Coffea canephora HOM05D003920 ORTHO05D004877 1.8e-90 336.7 358 51.4
Thhalv10023829m.g Eutrema salsugineum HOM05D003920 ORTHO05D004877 2.3e-90 336.3 334 57.8
C08p21410 Brassica napus HOM05D003920 ORTHO05D004877 1.5e-89 333.6 200 73.5
MSTRG.20593 Avicennia marina HOM05D003920 ORTHO05D004877 9.9e-89 330.9 302 59.3
Sp5g00030 Schrenkiella parvula HOM05D003920 ORTHO05D004877 4.1e-87 325.5 283 64.0
FAN01G3017 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.4e-87 325.1 189 74.1
FAN03G2194 Fragaria x ananassa HOM05D003920 ORTHO05D004877 5.4e-87 325.1 189 74.1
ClCG09G004250 Citrullus lanatus HOM05D003920 ORTHO05D004877 2.7e-86 322.8 186 76.3
RcHm_v2.0_Chr1g0315781 Rosa chinensis HOM05D003920 ORTHO05D004877 6.0e-86 321.6 189 73.0
TWI53G1741 Tripterygium wilfordii HOM05D003920 ORTHO05D004877 8.6e-85 317.8 190 73.7
Lj7A569G59 Lonicera japonica HOM05D003920 ORTHO05D004877 3.6e-83 312.4 274 53.3
BcaC07g39147 Brassica carinata HOM05D003920 ORTHO05D004877 8.1e-83 311.2 296 52.7
PGR044G2672 Punica granatum HOM05D003920 ORTHO05D004877 6.4e-80 301.6 337 50.4
Pp3c5_25680 Physcomitrium patens HOM05D003920 ORTHO05D004877 1.9e-79 300.1 211 61.1
Manes.07G005000 Manihot esculenta HOM05D003920 ORTHO05D004877 2.4e-79 299.7 297 57.6
Potri.004G134400 Populus trichocarpa HOM05D003920 ORTHO05D004877 2.4e-79 299.7 285 57.2
SMO203G0245 Selaginella moellendorffii HOM05D003920 ORTHO05D004877 5.4e-79 298.5 316 51.9
SGA_v2.0_scaffold24G10678 Striga asiatica HOM05D003920 ORTHO05D004877 9.2e-79 297.7 282 58.2
Hund03665 Selenicereus undatus HOM05D003920 ORTHO05D004877 6.6e-77 291.6 318 53.8
Peaxi162Scf00148g00610 Petunia axillaris HOM05D003920 ORTHO05D004877 1.1e-76 290.8 263 52.5
AUR62023057 Chenopodium quinoa HOM05D003920 ORTHO05D004877 9.6e-76 287.7 291 55.0
Actinidia24671 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.1e-75 286.6 244 55.7
Sabra04G0083700 Salix brachista HOM05D003920 ORTHO05D004877 2.1e-75 286.6 265 52.1
Zm00001eb252860 Zea mays HOM05D003920 ORTHO05D004877 8.1e-75 284.6 325 44.3
Mapoly0042s0020 Marchantia polymorpha HOM05D003920 ORTHO05D004877 7.6e-73 278.1 211 55.5
Lalb_Chr20g0108061 Lupinus albus HOM05D003920 ORTHO05D004877 2.4e-71 273.1 312 51.0
vmacro08182 Vaccinium macrocarpon HOM05D003920 ORTHO05D004877 3.5e-70 269.2 296 52.4
Glyma.15G273000 Glycine max HOM05D003920 ORTHO05D004877 4.6e-70 268.9 314 43.9
arahy.Tifrunner.gnm1.ann1.3CZ6TN Arachis hypogaea HOM05D003920 ORTHO05D004877 6.0e-70 268.5 320 44.4
Lalb_Chr01g0015331 Lupinus albus HOM05D003920 ORTHO05D004877 3.9e-69 265.8 317 49.8
Nitab4.5_0004786g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 5.1e-69 265.4 342 48.2
Lj3g0002246 Lotus japonicus HOM05D003920 ORTHO05D004877 8.7e-69 264.6 322 47.5
arahy.Tifrunner.gnm1.ann1.NHZH5I Arachis hypogaea HOM05D003920 ORTHO05D004877 4.3e-68 262.3 189 62.4
Gohir.A08G145200 Gossypium hirsutum HOM05D003920 ORTHO05D004877 1.6e-67 260.4 156 73.7
Phvul.005G020000 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 6.2e-67 258.5 316 49.1
VMungo1080G1751 Vigna mungo HOM05D003920 ORTHO05D004877 1.8e-66 256.9 188 60.6
Glyma.08G154100 Glycine max HOM05D003920 ORTHO05D004877 2.4e-66 256.5 315 43.2
AagrBONN_evm.TU.Sc2ySwM_344.3645 Anthoceros agrestis HOM05D003920 ORTHO05D004877 3.1e-66 256.1 315 45.7
Medtr3g028170 Medicago truncatula HOM05D003920 ORTHO05D004877 2.0e-65 253.4 312 48.4
Ca_14370_v3 Cicer arietinum L. HOM05D003920 ORTHO05D004877 6.4e-64 248.4 194 58.2
TPR.G12281 Trifolium pratense HOM05D003920 ORTHO05D004877 1.1e-63 247.7 191 57.1
Psat5g204240 Pisum sativum HOM05D003920 ORTHO05D004877 1.4e-63 247.3 189 59.3
Nitab4.5_0001299g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 1.2e-62 244.2 222 55.0
Actinidia36714 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.7e-62 243.0 285 47.0
Nitab4.5_0000254g0170 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.3e-60 235.7 249 47.4
Actinidia31057 Actinidia chinensis HOM05D003920 ORTHO05D004877 2.8e-59 233.0 289 50.5
unitig_26.g8826 Utricularia gibba HOM05D003920 ORTHO05D004877 1.1e-50 204.5 254 47.6
Cre06.g278136 Chlamydomonas reinhardtii HOM05D003920 ORTHO05D004877 6.9e-50 201.8 197 44.7
arahy.Tifrunner.gnm1.ann1.HIY6S0 Arachis hypogaea HOM05D003920 ORTHO05D004877 5.8e-49 198.7 182 51.6
arahy.Tifrunner.gnm1.ann1.YQ2HRW Arachis hypogaea HOM05D003920 ORTHO05D004877 1.7e-48 197.2 182 51.6
PRCOL_00005356 Prasinoderma coloniale HOM05D003920 ORTHO05D004877 1.7e-48 197.2 208 43.3
Nitab4.5_0003190g0010 Nicotiana tabacum HOM05D003920 ORTHO05D004877 4.6e-46 189.1 226 42.9
Phvul.011G110100 Phaseolus vulgaris HOM05D003920 ORTHO05D004877 1.3e-40 171.0 93 79.6
Oeu039134.1 Olea europaea HOM05D003920 ORTHO05D004877 1.2e-38 164.5 97 77.3
GSVIVG01032073001 Vitis vinifera HOM05D003920 ORTHO05D004877 3.6e-38 162.9 97 73.2
TPR.G31394 Trifolium pratense HOM05D002628 ORTHO05D002785 1.2e-14 84.7 102 38.2
QL04p032014 Quercus lobata HOM05D003920 ORTHO05D004877 9.7e-12 75.1 38 78.9
QL04p032319 Quercus lobata HOM05D003920 ORTHO05D004877 1.7e-11 74.3 48 64.6


User provided reference genes

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