Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 6.1e-73 277.3 135 100.0
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.9e-58 229.2 113 98.2
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 7.3e-58 227.3 113 97.3
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 4.2e-13 78.6 55 72.7
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 5.5e-13 78.2 55 72.7
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 5.5e-13 78.2 55 72.7
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 5.5e-13 78.2 55 72.7
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 5.5e-13 78.2 55 72.7
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 9.3e-13 77.4 55 70.9
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 9.3e-13 77.4 55 70.9
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 9.3e-13 77.4 55 70.9
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 9.3e-13 77.4 55 70.9
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 9.3e-13 77.4 55 70.9
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 1.6e-12 76.6 55 70.9
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.6e-12 76.6 55 70.9
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-12 76.6 55 70.9
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.6e-12 76.6 55 70.9
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 1.6e-12 76.6 55 70.9
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 1.6e-12 76.6 55 70.9
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 3.5e-12 75.5 55 69.1
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 4.6e-12 75.1 36 97.2
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 6.0e-12 74.7 40 90.0
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 6.0e-12 74.7 40 90.0
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 6.0e-12 74.7 55 67.3
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 7.9e-12 74.3 55 67.3
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.0e-11 73.9 35 100.0
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 1.8e-11 73.2 39 89.7
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 3.0e-11 72.4 55 63.6
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 3.9e-11 72.0 55 63.6
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 3.9e-11 72.0 55 63.6
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 3.9e-11 72.0 55 63.6
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 5.1e-11 71.6 35 97.1
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 5.1e-11 71.6 35 97.1
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 5.1e-11 71.6 35 97.1
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 5.1e-11 71.6 35 97.1
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 5.1e-11 71.6 55 61.8
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 5.1e-11 71.6 55 63.6
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 6.7e-11 71.2 55 61.8
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 6.7e-11 71.2 55 61.8
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 6.7e-11 71.2 55 61.8
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 8.7e-11 70.9 55 61.8
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 8.7e-11 70.9 55 61.8
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 8.7e-11 70.9 55 61.8
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 8.7e-11 70.9 55 63.6
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 8.7e-11 70.9 55 63.6
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.5e-10 70.1 55 61.8
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.5e-10 70.1 55 60.0
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 1.5e-10 70.1 55 61.8
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 1.9e-10 69.7 34 97.1
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 1.9e-10 69.7 55 60.0
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.9e-10 69.7 55 60.0
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 1.9e-10 69.7 55 61.8
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 1.9e-10 69.7 55 61.8
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.9e-10 69.7 55 60.0
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 2.5e-10 69.3 55 61.8
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 2.5e-10 69.3 55 61.8
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 2.5e-10 69.3 55 61.8
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 3.3e-10 68.9 55 60.0
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 4.3e-10 68.6 55 60.0
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 4.3e-10 68.6 55 58.2
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 5.6e-10 68.2 55 58.2
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 5.6e-10 68.2 55 60.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 7.4e-10 67.8 55 60.0
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 7.4e-10 67.8 55 61.8
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 7.4e-10 67.8 55 60.0
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 7.4e-10 67.8 55 58.2
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 7.4e-10 67.8 55 58.2
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 56.4
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 56.4
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 60.0
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 58.2
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 58.2
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 58.2
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 58.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 1.3e-09 67.0 55 58.2
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 58.2
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 60.0
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 58.2
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 58.2
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 1.6e-09 66.6 35 85.7
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 56.4
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 56.4
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 1.6e-09 66.6 55 56.4
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 2.1e-09 66.2 56 60.7
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 2.8e-09 65.9 55 56.4
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 2.8e-09 65.9 55 56.4
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 3.7e-09 65.5 35 82.9
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.7e-09 65.5 55 56.4
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 3.7e-09 65.5 55 56.4
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 3.7e-09 65.5 55 56.4
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 3.7e-09 65.5 55 56.4
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 4.8e-09 65.1 55 56.4
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.8e-09 65.1 55 60.0
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 4.8e-09 65.1 55 60.0
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 4.8e-09 65.1 53 58.5
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 4.8e-09 65.1 55 56.4
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 4.8e-09 65.1 56 60.7
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 4.8e-09 65.1 55 56.4
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 4.8e-09 65.1 55 56.4
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 4.8e-09 65.1 35 80.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 6.2e-09 64.7 35 80.0
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 8.2e-09 64.3 55 56.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 8.2e-09 64.3 55 56.4
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 8.2e-09 64.3 55 56.4
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.1e-08 63.9 35 80.0
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 1.1e-08 63.9 55 56.4
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.1e-08 63.9 55 54.5
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 1.1e-08 63.9 55 52.7
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 1.4e-08 63.5 55 58.2
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 1.8e-08 63.2 55 54.5
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 1.8e-08 63.2 55 54.5
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 2.4e-08 62.8 55 56.4
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 2.4e-08 62.8 55 56.4
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 2.4e-08 62.8 55 54.5
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 3.1e-08 62.4 29 100.0
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 52.7
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 54.5
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 54.5
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 54.5
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 54.5
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 54.5
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 3.1e-08 62.4 55 52.7
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 4.0e-08 62.0 55 52.7
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 4.0e-08 62.0 34 76.5
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 5.3e-08 61.6 35 74.3
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 9.0e-08 60.8 55 52.7
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.5e-07 60.1 55 49.1
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 4.5e-07 58.5 55 50.9
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 1.3e-06 57.0 55 52.7
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 1.3e-06 57.0 55 47.3
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 2.2e-06 56.2 45 62.2
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 3.8e-06 55.5 55 49.1


User provided reference genes

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